RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PDILTQ8N807 584 aa16.58■□□□□ 0.24
COLCA1-204ENST00000540738 DDX11Q96FC9 970 aa16.58■□□□□ 0.24
COLCA1-204ENST00000540738 MAGEB6P1A0A0J9YX57 407 aa16.58■□□□□ 0.24
COLCA1-204ENST00000540738 METTL22Q9BUU2 404 aaPredicted RBP16.58■□□□□ 0.24
COLCA1-204ENST00000540738 ARAP3Q8WWN8 1544 aa16.58■□□□□ 0.24
COLCA1-204ENST00000540738 SH2D4AQ9H788 454 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 SLC9C2Q5TAH2 1124 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 NLGN1Q8N2Q7 840 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 ANKRD44Q8N8A2 993 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 TMEM87AQ8NBN3 555 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 TANGO6Q9C0B7 1094 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 SMC2O95347 1197 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.57■□□□□ 0.24
COLCA1-204ENST00000540738 DHX8Q14562 1220 aaKnown RBP16.57■□□□□ 0.24
COLCA1-204ENST00000540738 TTC6Q86TZ1 520 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 CERS3Q8IU89 383 aa16.57■□□□□ 0.24
COLCA1-204ENST00000540738 CWF19L2Q2TBE0 894 aaKnown RBP16.56■□□□□ 0.24
COLCA1-204ENST00000540738 BEGAINQ9BUH8 593 aa16.56■□□□□ 0.24
COLCA1-204ENST00000540738 NIM1KQ8IY84 436 aa16.56■□□□□ 0.24
COLCA1-204ENST00000540738 TXLNBQ8N3L3 684 aa16.56■□□□□ 0.24
COLCA1-204ENST00000540738 VAMP4O75379 141 aa16.56■□□□□ 0.24
COLCA1-204ENST00000540738 KIF20AO95235 890 aa16.56■□□□□ 0.24
COLCA1-204ENST00000540738 IBSPP21815 317 aaPredicted RBP16.56■□□□□ 0.24
COLCA1-204ENST00000540738 KIAA0232Q92628 1395 aa16.55■□□□□ 0.24
COLCA1-204ENST00000540738 UNC5CLQ8IV45 518 aa16.55■□□□□ 0.24
COLCA1-204ENST00000540738 MCM5P33992 734 aa16.55■□□□□ 0.24
COLCA1-204ENST00000540738 IARSP41252 1262 aaKnown RBP16.55■□□□□ 0.24
COLCA1-204ENST00000540738 FAM89AQ96GI7 184 aa16.55■□□□□ 0.24
COLCA1-204ENST00000540738 INSRP06213 1382 aa16.55■□□□□ 0.24
COLCA1-204ENST00000540738 SBNO2Q9Y2G9 1366 aa16.55■□□□□ 0.24
COLCA1-204ENST00000540738 HIBADHP31937 336 aaKnown RBP16.54■□□□□ 0.24
COLCA1-204ENST00000540738 WTAPQ15007 396 aa16.54■□□□□ 0.24
COLCA1-204ENST00000540738 VAT1LQ9HCJ6 419 aa16.54■□□□□ 0.24
COLCA1-204ENST00000540738 PRPF40AO75400 957 aaKnown RBP16.54■□□□□ 0.24
COLCA1-204ENST00000540738 PHKG2P15735 406 aa16.54■□□□□ 0.24
COLCA1-204ENST00000540738 HELBQ8NG08 1087 aaPredicted RBP16.54■□□□□ 0.24
COLCA1-204ENST00000540738 CCDC82Q8N4S0 544 aa16.54■□□□□ 0.24
COLCA1-204ENST00000540738 PTPRTO14522 1441 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 A1BGP04217 495 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 DPY19L2Q6NUT2 758 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 TNMDQ9H2S6 317 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 PAG1Q9NWQ8 432 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 CIZ1Q9ULV3 898 aaPredicted RBP16.53■□□□□ 0.24
COLCA1-204ENST00000540738 THRAP3Q9Y2W1 955 aaKnown RBP16.53■□□□□ 0.24
COLCA1-204ENST00000540738 NEK1Q96PY6 1258 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 LGR6Q9HBX8 967 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 FAM135BQ49AJ0 1406 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 HCLS1P14317 486 aaPredicted RBP16.53■□□□□ 0.24
COLCA1-204ENST00000540738 ITGA6P23229 1130 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 CCDC83Q8IWF9 413 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 UPF3BQ9BZI7 483 aaKnown RBP16.53■□□□□ 0.24
COLCA1-204ENST00000540738 TTC41PQ6P2S7 1318 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 BRPF1P55201 1214 aaPredicted RBP16.53■□□□□ 0.24
COLCA1-204ENST00000540738 HAND2P61296 217 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 MCMDC2Q4G0Z9 681 aa16.53■□□□□ 0.24
COLCA1-204ENST00000540738 PUM3Q15397 648 aaKnown RBP16.52■□□□□ 0.24
COLCA1-204ENST00000540738 BMP2KLQ5H9B9 411 aa16.52■□□□□ 0.24
COLCA1-204ENST00000540738 CCDC148Q8NFR7 591 aa16.52■□□□□ 0.24
COLCA1-204ENST00000540738 LIMCH1Q9UPQ0 1083 aa16.52■□□□□ 0.24
COLCA1-204ENST00000540738 ERCC6L2Q5T890 1561 aa16.52■□□□□ 0.24
COLCA1-204ENST00000540738 METAP2P50579 478 aaKnown RBP eCLIP16.52■□□□□ 0.24
COLCA1-204ENST00000540738 HDAC1Q13547 482 aaPredicted RBP16.52■□□□□ 0.24
COLCA1-204ENST00000540738 WDR66Q8TBY9 1149 aa16.52■□□□□ 0.24
COLCA1-204ENST00000540738 ERBB4Q15303 1308 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 A2ML1A8K2U0 1454 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 CCDC192P0DO97 292 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 IFIT1BQ5T764 474 aaKnown RBP16.52■□□□□ 0.23
COLCA1-204ENST00000540738 CNKSR1Q969H4 720 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 USP16Q9Y5T5 823 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 RTL1A6NKG5 1358 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 WDR17Q8IZU2 1322 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 C20orf194Q5TEA3 1177 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 TRIM5Q9C035 493 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 RBM27Q9P2N5 1060 aaKnown RBP16.52■□□□□ 0.23
COLCA1-204ENST00000540738 BCS1LQ9Y276 419 aa16.52■□□□□ 0.23
COLCA1-204ENST00000540738 EYA2O00167 538 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 ZNF496Q96IT1 587 aaPredicted RBP16.51■□□□□ 0.23
COLCA1-204ENST00000540738 PICK1Q9NRD5 415 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 MCM9Q9NXL9 1143 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 GPS2Q13227 327 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 SLC4A8Q2Y0W8 1093 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 RTN4Q9NQC3 1192 aaKnown RBP16.51■□□□□ 0.23
COLCA1-204ENST00000540738 POTEJP0CG39 1038 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 ARHGAP31Q2M1Z3 1444 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 TTC22Q5TAA0 569 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 MPNDQ8N594 471 aa16.51■□□□□ 0.23
COLCA1-204ENST00000540738 ARHGEF25Q86VW2 580 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 SERPINC1P01008 464 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 BACH2Q9BYV9 841 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 TCP11L1Q9NUJ3 509 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 H7C1D1 291 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 CHL1O00533 1208 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 NBPF7P0C2Y1 421 aaPredicted RBP16.5■□□□□ 0.23
COLCA1-204ENST00000540738 STXBP4Q6ZWJ1 553 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 MICU3Q86XE3 530 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 TBC1D22AQ8WUA7 517 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 TRIM37O94972 964 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 TSG101Q99816 390 aa16.5■□□□□ 0.23
COLCA1-204ENST00000540738 MYOM2P54296 1465 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 ROBO2Q9HCK4 1378 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms