RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 PDE8AO60658 829 aa23.64■■□□□ 1.37
TNFRSF1A-213ENST00000540022 ATP8B2P98198 1209 aa23.64■■□□□ 1.37
TNFRSF1A-213ENST00000540022 MTX1Q13505 466 aa23.64■■□□□ 1.37
TNFRSF1A-213ENST00000540022 SLC10A5Q5PT55 438 aa23.64■■□□□ 1.37
TNFRSF1A-213ENST00000540022 C10orf71Q711Q0 1435 aa23.63■■□□□ 1.37
TNFRSF1A-213ENST00000540022 BRCA1P38398 1863 aaKnown RBP23.63■■□□□ 1.37
TNFRSF1A-213ENST00000540022 B4GALNT3Q6L9W6 998 aa23.63■■□□□ 1.37
TNFRSF1A-213ENST00000540022 LMBR1LQ6UX01 489 aa23.63■■□□□ 1.37
TNFRSF1A-213ENST00000540022 CCDC136Q96JN2 1154 aa23.63■■□□□ 1.37
TNFRSF1A-213ENST00000540022 NPHP1O15259 732 aa23.62■■□□□ 1.37
TNFRSF1A-213ENST00000540022 NRXN2Q9P2S2 1712 aa23.61■■□□□ 1.37
TNFRSF1A-213ENST00000540022 IGHDP01880 384 aa23.61■■□□□ 1.37
TNFRSF1A-213ENST00000540022 SRGAP3O43295 1099 aa23.6■■□□□ 1.37
TNFRSF1A-213ENST00000540022 CSF1RP07333 972 aa23.6■■□□□ 1.37
TNFRSF1A-213ENST00000540022 CTSWP56202 376 aa23.6■■□□□ 1.37
TNFRSF1A-213ENST00000540022 TTLL11Q8NHH1 800 aa23.6■■□□□ 1.37
TNFRSF1A-213ENST00000540022 HSP90B1P14625 803 aaKnown RBP23.59■■□□□ 1.37
TNFRSF1A-213ENST00000540022 HDAC1Q13547 482 aaPredicted RBP23.59■■□□□ 1.37
TNFRSF1A-213ENST00000540022 C3orf67Q6ZVT6 689 aa23.59■■□□□ 1.37
TNFRSF1A-213ENST00000540022 SSH3Q8TE77 659 aa23.59■■□□□ 1.37
TNFRSF1A-213ENST00000540022 ST5P78524 1137 aa23.59■■□□□ 1.37
TNFRSF1A-213ENST00000540022 POLA2Q14181 598 aa23.59■■□□□ 1.37
TNFRSF1A-213ENST00000540022 CCDC85AQ96PX6 553 aaPredicted RBP23.59■■□□□ 1.37
TNFRSF1A-213ENST00000540022 RWDD1Q9H446 243 aaPredicted RBP23.58■■□□□ 1.36
TNFRSF1A-213ENST00000540022 CHMP3Q9Y3E7 222 aa23.58■■□□□ 1.36
TNFRSF1A-213ENST00000540022 HMMRO75330 724 aa23.57■■□□□ 1.36
TNFRSF1A-213ENST00000540022 WWC3Q9ULE0 1092 aa23.57■■□□□ 1.36
TNFRSF1A-213ENST00000540022 GRIN3BO60391 1043 aa23.56■■□□□ 1.36
TNFRSF1A-213ENST00000540022 SF3B3Q15393 1217 aaKnown RBP23.56■■□□□ 1.36
TNFRSF1A-213ENST00000540022 FAM161AQ3B820 660 aa23.56■■□□□ 1.36
TNFRSF1A-213ENST00000540022 NLRP3Q96P20 1036 aa23.56■■□□□ 1.36
TNFRSF1A-213ENST00000540022 DDX60Q8IY21 1712 aaKnown RBP23.56■■□□□ 1.36
TNFRSF1A-213ENST00000540022 RIC1Q4ADV7 1423 aa23.56■■□□□ 1.36
TNFRSF1A-213ENST00000540022 RFX5P48382 616 aaPredicted RBP23.55■■□□□ 1.36
TNFRSF1A-213ENST00000540022 TGFB2P61812 414 aa23.55■■□□□ 1.36
TNFRSF1A-213ENST00000540022 GREM2Q9H772 168 aa23.55■■□□□ 1.36
TNFRSF1A-213ENST00000540022 CCDC152Q4G0S7 254 aa23.54■■□□□ 1.36
TNFRSF1A-213ENST00000540022 KDM2BQ8NHM5 1336 aa23.53■■□□□ 1.36
TNFRSF1A-213ENST00000540022 LAMB2P55268 1798 aa23.53■■□□□ 1.36
TNFRSF1A-213ENST00000540022 A0A0G2JLW4 131 aa23.53■■□□□ 1.36
TNFRSF1A-213ENST00000540022 ITGA6P23229 1130 aa23.53■■□□□ 1.36
TNFRSF1A-213ENST00000540022 KLHDC4Q8TBB5 520 aa23.53■■□□□ 1.36
TNFRSF1A-213ENST00000540022 BRIP1Q9BX63 1249 aa23.53■■□□□ 1.36
TNFRSF1A-213ENST00000540022 PA2G4Q9UQ80 394 aaKnown RBP23.53■■□□□ 1.36
TNFRSF1A-213ENST00000540022 TNRC6CQ9HCJ0 1690 aaKnown RBP23.52■■□□□ 1.36
TNFRSF1A-213ENST00000540022 CHRNA5P30532 468 aa23.52■■□□□ 1.36
TNFRSF1A-213ENST00000540022 PTPN12Q05209 780 aaKnown RBP23.52■■□□□ 1.36
TNFRSF1A-213ENST00000540022 CCDC57Q2TAC2 916 aa23.52■■□□□ 1.36
TNFRSF1A-213ENST00000540022 DCTPP1Q9H773 170 aa23.52■■□□□ 1.36
TNFRSF1A-213ENST00000540022 ARFGEF1Q9Y6D6 1849 aa23.52■■□□□ 1.36
TNFRSF1A-213ENST00000540022 ANKRD31Q8N7Z5 1873 aa23.51■■□□□ 1.35
TNFRSF1A-213ENST00000540022 DPEP1P16444 411 aa23.51■■□□□ 1.35
TNFRSF1A-213ENST00000540022 IFIT5Q13325 482 aaKnown RBP23.51■■□□□ 1.35
TNFRSF1A-213ENST00000540022 SEC31BQ9NQW1 1179 aa23.51■■□□□ 1.35
TNFRSF1A-213ENST00000540022 RTL9Q8NET4 1388 aa23.51■■□□□ 1.35
TNFRSF1A-213ENST00000540022 KLRG2A4D1S0 409 aaPredicted RBP23.5■■□□□ 1.35
TNFRSF1A-213ENST00000540022 ZNF594Q96JF6 807 aaPredicted RBP23.5■■□□□ 1.35
TNFRSF1A-213ENST00000540022 COPRSQ9NQ92 184 aa23.5■■□□□ 1.35
TNFRSF1A-213ENST00000540022 ANKRD18BA2A2Z9 1011 aa23.49■■□□□ 1.35
TNFRSF1A-213ENST00000540022 KCNA3P22001 575 aa23.49■■□□□ 1.35
TNFRSF1A-213ENST00000540022 CRY2Q49AN0 593 aa23.49■■□□□ 1.35
TNFRSF1A-213ENST00000540022 CENPQQ7L2Z9 268 aaPredicted RBP23.49■■□□□ 1.35
TNFRSF1A-213ENST00000540022 SMC5Q8IY18 1101 aa23.49■■□□□ 1.35
TNFRSF1A-213ENST00000540022 EXOC6BQ9Y2D4 811 aa23.49■■□□□ 1.35
TNFRSF1A-213ENST00000540022 SURF6O75683 361 aaKnown RBP23.49■■□□□ 1.35
TNFRSF1A-213ENST00000540022 NOP58Q9Y2X3 529 aaKnown RBP23.49■■□□□ 1.35
TNFRSF1A-213ENST00000540022 DLEC1Q9Y238 1755 aa23.48■■□□□ 1.35
TNFRSF1A-213ENST00000540022 C2CD5Q86YS7 1000 aa23.48■■□□□ 1.35
TNFRSF1A-213ENST00000540022 ZNF784Q8NCA9 323 aaPredicted RBP23.48■■□□□ 1.35
TNFRSF1A-213ENST00000540022 GCC1Q96CN9 775 aa23.48■■□□□ 1.35
TNFRSF1A-213ENST00000540022 SIL1Q9H173 461 aa23.48■■□□□ 1.35
TNFRSF1A-213ENST00000540022 PDE6BP35913 854 aa23.47■■□□□ 1.35
TNFRSF1A-213ENST00000540022 TAF7LQ5H9L4 462 aa23.46■■□□□ 1.35
TNFRSF1A-213ENST00000540022 DDX46Q7L014 1031 aaKnown RBP23.45■■□□□ 1.34
TNFRSF1A-213ENST00000540022 PUS3Q9BZE2 481 aaKnown RBP23.45■■□□□ 1.34
TNFRSF1A-213ENST00000540022 BCS1LQ9Y276 419 aa23.45■■□□□ 1.34
TNFRSF1A-213ENST00000540022 MYH3P11055 1940 aa23.45■■□□□ 1.34
TNFRSF1A-213ENST00000540022 COL11A2P13942 1736 aaPredicted RBP23.45■■□□□ 1.34
TNFRSF1A-213ENST00000540022 SRGNP10124 158 aa23.44■■□□□ 1.34
TNFRSF1A-213ENST00000540022 RPGRQ92834 1020 aaKnown RBP23.44■■□□□ 1.34
TNFRSF1A-213ENST00000540022 CELF1Q92879 486 aaKnown RBP23.44■■□□□ 1.34
TNFRSF1A-213ENST00000540022 CDC5LQ99459 802 aaKnown RBP23.44■■□□□ 1.34
TNFRSF1A-213ENST00000540022 COL4A1P02462 1669 aa23.44■■□□□ 1.34
TNFRSF1A-213ENST00000540022 APBB1O00213 710 aa23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 G3BP1Q13283 466 aaKnown RBP eCLIP23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 LRRC24Q50LG9 513 aa23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 H0YIN7 160 aa23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 EYA2O00167 538 aa23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 HOXA10P31260 410 aaPredicted RBP23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 HSP90AB4PQ58FF6 505 aa23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 LDHAL6AQ6ZMR3 332 aa23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 ATG9AQ7Z3C6 839 aa23.43■■□□□ 1.34
TNFRSF1A-213ENST00000540022 OS9Q13438 667 aaPredicted RBP23.42■■□□□ 1.34
TNFRSF1A-213ENST00000540022 ANKRD18AQ8IVF6 992 aa23.42■■□□□ 1.34
TNFRSF1A-213ENST00000540022 RBM17Q96I25 401 aaKnown RBP23.42■■□□□ 1.34
TNFRSF1A-213ENST00000540022 PIM2Q9P1W9 311 aa23.42■■□□□ 1.34
TNFRSF1A-213ENST00000540022 RAB11FIP3O75154 756 aa23.41■■□□□ 1.34
TNFRSF1A-213ENST00000540022 CIAO1O76071 339 aa23.41■■□□□ 1.34
TNFRSF1A-213ENST00000540022 IGHMBP2P38935 993 aaKnown RBP23.41■■□□□ 1.34
TNFRSF1A-213ENST00000540022 RPS8P62241 208 aaKnown RBP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms