RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PDE6BP35913 854 aa16.42■□□□□ 0.22
CCDC42-202ENST00000539522 TTLL11Q8NHH1 800 aa16.42■□□□□ 0.22
CCDC42-202ENST00000539522 PDE8AO60658 829 aa16.41■□□□□ 0.22
CCDC42-202ENST00000539522 YBX3P16989 372 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC42-202ENST00000539522 LTBP1Q14766 1721 aa16.41■□□□□ 0.22
CCDC42-202ENST00000539522 CTSWP56202 376 aa16.4■□□□□ 0.22
CCDC42-202ENST00000539522 RABL6Q3YEC7 729 aaPredicted RBP16.4■□□□□ 0.22
CCDC42-202ENST00000539522 STYK1Q6J9G0 422 aa16.4■□□□□ 0.22
CCDC42-202ENST00000539522 C7orf43Q8WVR3 580 aa16.4■□□□□ 0.22
CCDC42-202ENST00000539522 NLRP3Q96P20 1036 aa16.4■□□□□ 0.22
CCDC42-202ENST00000539522 CCDC85AQ96PX6 553 aaPredicted RBP16.4■□□□□ 0.22
CCDC42-202ENST00000539522 SEC31BQ9NQW1 1179 aa16.4■□□□□ 0.22
CCDC42-202ENST00000539522 C9orf78Q9NZ63 289 aaPredicted RBP16.4■□□□□ 0.22
CCDC42-202ENST00000539522 COG6Q9Y2V7 657 aa16.4■□□□□ 0.22
CCDC42-202ENST00000539522 GTF3C3Q9Y5Q9 886 aa16.4■□□□□ 0.22
CCDC42-202ENST00000539522 H0YIN7 160 aa16.39■□□□□ 0.21
CCDC42-202ENST00000539522 NPHP1O15259 732 aa16.39■□□□□ 0.21
CCDC42-202ENST00000539522 NPR1P16066 1061 aa16.39■□□□□ 0.21
CCDC42-202ENST00000539522 PDE3AQ14432 1141 aa16.39■□□□□ 0.21
CCDC42-202ENST00000539522 MVPQ14764 893 aaKnown RBP16.39■□□□□ 0.21
CCDC42-202ENST00000539522 OLFM4Q6UX06 510 aa16.39■□□□□ 0.21
CCDC42-202ENST00000539522 CELF1Q92879 486 aaKnown RBP16.39■□□□□ 0.21
CCDC42-202ENST00000539522 MASTLQ96GX5 879 aa16.39■□□□□ 0.21
CCDC42-202ENST00000539522 BICC1Q9H694 974 aaKnown RBP16.39■□□□□ 0.21
CCDC42-202ENST00000539522 GREM2Q9H772 168 aa16.39■□□□□ 0.21
CCDC42-202ENST00000539522 RTL9Q8NET4 1388 aa16.38■□□□□ 0.21
CCDC42-202ENST00000539522 FER1L6Q2WGJ9 1857 aa16.38■□□□□ 0.21
CCDC42-202ENST00000539522 NEFLP07196 543 aa16.38■□□□□ 0.21
CCDC42-202ENST00000539522 FAM161AQ3B820 660 aa16.38■□□□□ 0.21
CCDC42-202ENST00000539522 FTSJ3Q8IY81 847 aaKnown RBP16.38■□□□□ 0.21
CCDC42-202ENST00000539522 LMBR1LQ6UX01 489 aa16.37■□□□□ 0.21
CCDC42-202ENST00000539522 ITPRIPQ8IWB1 547 aa16.37■□□□□ 0.21
CCDC42-202ENST00000539522 LRRFIP2Q9Y608 721 aaKnown RBP16.37■□□□□ 0.21
CCDC42-202ENST00000539522 DUOX1Q9NRD9 1551 aa16.37■□□□□ 0.21
CCDC42-202ENST00000539522 PRPF40BQ6NWY9 871 aaKnown RBP16.36■□□□□ 0.21
CCDC42-202ENST00000539522 ZNF622Q969S3 477 aaKnown RBP eCLIP16.36■□□□□ 0.21
CCDC42-202ENST00000539522 CRAMP1Q96RY5 1269 aa16.36■□□□□ 0.21
CCDC42-202ENST00000539522 C1orf115Q9H7X2 142 aa16.36■□□□□ 0.21
CCDC42-202ENST00000539522 PIM2Q9P1W9 311 aa16.36■□□□□ 0.21
CCDC42-202ENST00000539522 PDZRN3Q9UPQ7 1066 aa16.36■□□□□ 0.21
CCDC42-202ENST00000539522 UBTFL1P0CB47 393 aaPredicted RBP16.35■□□□□ 0.21
CCDC42-202ENST00000539522 RFX5P48382 616 aaPredicted RBP16.35■□□□□ 0.21
CCDC42-202ENST00000539522 ZBTB40Q9NUA8 1239 aa16.35■□□□□ 0.21
CCDC42-202ENST00000539522 PRELPP51888 382 aa16.34■□□□□ 0.21
CCDC42-202ENST00000539522 GRAPQ13588 217 aa16.34■□□□□ 0.21
CCDC42-202ENST00000539522 TTLL6Q8N841 843 aa16.34■□□□□ 0.21
CCDC42-202ENST00000539522 GRAPLQ8TC17 118 aaPredicted RBP16.34■□□□□ 0.21
CCDC42-202ENST00000539522 RPGRQ92834 1020 aaKnown RBP16.34■□□□□ 0.21
CCDC42-202ENST00000539522 CRBNQ96SW2 442 aa16.34■□□□□ 0.21
CCDC42-202ENST00000539522 SBF1O95248 1867 aa16.33■□□□□ 0.21
CCDC42-202ENST00000539522 ITGA6P23229 1130 aa16.33■□□□□ 0.2
CCDC42-202ENST00000539522 CCDC152Q4G0S7 254 aa16.33■□□□□ 0.2
CCDC42-202ENST00000539522 DALRD3Q5D0E6 543 aaKnown RBP16.33■□□□□ 0.2
CCDC42-202ENST00000539522 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.33■□□□□ 0.2
CCDC42-202ENST00000539522 RBM17Q96I25 401 aaKnown RBP16.33■□□□□ 0.2
CCDC42-202ENST00000539522 ZNF594Q96JF6 807 aaPredicted RBP16.33■□□□□ 0.2
CCDC42-202ENST00000539522 BCS1LQ9Y276 419 aa16.33■□□□□ 0.2
CCDC42-202ENST00000539522 PNMA6EA0A0J9YXQ4 647 aa16.32■□□□□ 0.2
CCDC42-202ENST00000539522 C21orf2O43822 256 aa16.32■□□□□ 0.2
CCDC42-202ENST00000539522 GNAI3P08754 354 aa16.32■□□□□ 0.2
CCDC42-202ENST00000539522 MTX1Q13505 466 aa16.32■□□□□ 0.2
CCDC42-202ENST00000539522 SIRT2Q8IXJ6 389 aa16.32■□□□□ 0.2
CCDC42-202ENST00000539522 KLHDC4Q8TBB5 520 aa16.32■□□□□ 0.2
CCDC42-202ENST00000539522 CNKSR1Q969H4 720 aa16.32■□□□□ 0.2
CCDC42-202ENST00000539522 COL4A5P29400 1685 aa16.31■□□□□ 0.2
CCDC42-202ENST00000539522 WTIPA6NIX2 430 aaPredicted RBP16.31■□□□□ 0.2
CCDC42-202ENST00000539522 MS4A1P11836 297 aa16.31■□□□□ 0.2
CCDC42-202ENST00000539522 DDX46Q7L014 1031 aaKnown RBP16.31■□□□□ 0.2
CCDC42-202ENST00000539522 ZNF219Q9P2Y4 722 aaPredicted RBP16.31■□□□□ 0.2
CCDC42-202ENST00000539522 DDX19BQ9UMR2 479 aa16.31■□□□□ 0.2
CCDC42-202ENST00000539522 CCDC88AQ3V6T2 1871 aa16.31■□□□□ 0.2
CCDC42-202ENST00000539522 NFKBIEO00221 500 aa16.3■□□□□ 0.2
CCDC42-202ENST00000539522 PPEF1O14829 653 aaPredicted RBP16.3■□□□□ 0.2
CCDC42-202ENST00000539522 GNAI2P04899 355 aa16.3■□□□□ 0.2
CCDC42-202ENST00000539522 ALDH1B1P30837 517 aa16.3■□□□□ 0.2
CCDC42-202ENST00000539522 RPS8P62241 208 aaKnown RBP16.3■□□□□ 0.2
CCDC42-202ENST00000539522 ERICH6BQ5W0A0 696 aa16.3■□□□□ 0.2
CCDC42-202ENST00000539522 PUS3Q9BZE2 481 aaKnown RBP16.3■□□□□ 0.2
CCDC42-202ENST00000539522 ATP6V0A2Q9Y487 856 aa16.3■□□□□ 0.2
CCDC42-202ENST00000539522 BBOX1O75936 387 aa16.29■□□□□ 0.2
CCDC42-202ENST00000539522 HSP90B1P14625 803 aaKnown RBP16.29■□□□□ 0.2
CCDC42-202ENST00000539522 IRX6P78412 446 aaPredicted RBP16.29■□□□□ 0.2
CCDC42-202ENST00000539522 PTPN12Q05209 780 aaKnown RBP16.29■□□□□ 0.2
CCDC42-202ENST00000539522 CEP85Q6P2H3 762 aa16.29■□□□□ 0.2
CCDC42-202ENST00000539522 POLA2Q14181 598 aa16.28■□□□□ 0.2
CCDC42-202ENST00000539522 SP8Q8IXZ3 490 aa16.28■□□□□ 0.2
CCDC42-202ENST00000539522 EXOC6Q8TAG9 804 aa16.28■□□□□ 0.2
CCDC42-202ENST00000539522 CHMP3Q9Y3E7 222 aa16.28■□□□□ 0.2
CCDC42-202ENST00000539522 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.28■□□□□ 0.2
CCDC42-202ENST00000539522 ANKRD18BA2A2Z9 1011 aa16.27■□□□□ 0.2
CCDC42-202ENST00000539522 ATP8B2P98198 1209 aa16.27■□□□□ 0.2
CCDC42-202ENST00000539522 IFIT5Q13325 482 aaKnown RBP16.27■□□□□ 0.2
CCDC42-202ENST00000539522 LRRC24Q50LG9 513 aa16.27■□□□□ 0.2
CCDC42-202ENST00000539522 PELP1Q8IZL8 1130 aaKnown RBP16.27■□□□□ 0.2
CCDC42-202ENST00000539522 MINPP1Q9UNW1 487 aa16.27■□□□□ 0.2
CCDC42-202ENST00000539522 PA2G4Q9UQ80 394 aaKnown RBP16.27■□□□□ 0.2
CCDC42-202ENST00000539522 PCDHB15Q9Y5E8 787 aa16.27■□□□□ 0.2
CCDC42-202ENST00000539522 DICER1Q9UPY3 1922 aaKnown RBP16.26■□□□□ 0.19
CCDC42-202ENST00000539522 GPSM2P81274 684 aa16.26■□□□□ 0.19
CCDC42-202ENST00000539522 RASSF7Q02833 373 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms