RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 PLBD2Q8NHP8 589 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 CDCA7LQ96GN5 454 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 MASTLQ96GX5 879 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 ISCA1Q9BUE6 129 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 UTP14AQ9BVJ6 771 aaKnown RBP9.36□□□□□ -0.91
LMO3-220ENST00000539232 HACL1Q9UJ83 578 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 DLG5Q8TDM6 1919 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 A0A0C4DFX4 3053 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 NRXN2Q9P2S2 1712 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 IL16Q14005 1332 aa9.35□□□□□ -0.91
LMO3-220ENST00000539232 VAMP4O75379 141 aa9.35□□□□□ -0.91
LMO3-220ENST00000539232 GTF2E1P29083 439 aaPredicted RBP9.35□□□□□ -0.91
LMO3-220ENST00000539232 EPHX2P34913 555 aa9.35□□□□□ -0.91
LMO3-220ENST00000539232 CALD1Q05682 793 aaKnown RBP9.35□□□□□ -0.91
LMO3-220ENST00000539232 TWISTNBQ3B726 338 aaPredicted RBP9.35□□□□□ -0.91
LMO3-220ENST00000539232 SLC10A5Q5PT55 438 aa9.35□□□□□ -0.91
LMO3-220ENST00000539232 WDR63Q8IWG1 891 aa9.35□□□□□ -0.91
LMO3-220ENST00000539232 FAM89AQ96GI7 184 aa9.35□□□□□ -0.91
LMO3-220ENST00000539232 HYPKQ9NX55 129 aa9.35□□□□□ -0.91
LMO3-220ENST00000539232 TRMT112Q9UI30 125 aaKnown RBP9.35□□□□□ -0.91
LMO3-220ENST00000539232 TLL2Q9Y6L7 1015 aa9.35□□□□□ -0.91
LMO3-220ENST00000539232 AFDNP55196 1824 aaKnown RBP9.35□□□□□ -0.91
LMO3-220ENST00000539232 PITPNM2Q9BZ72 1349 aa9.34□□□□□ -0.91
LMO3-220ENST00000539232 IGKV5-2P06315 115 aa9.34□□□□□ -0.91
LMO3-220ENST00000539232 HOXA10P31260 410 aaPredicted RBP9.34□□□□□ -0.91
LMO3-220ENST00000539232 CNKSR1Q969H4 720 aa9.34□□□□□ -0.91
LMO3-220ENST00000539232 MYD88Q99836 296 aa9.34□□□□□ -0.91
LMO3-220ENST00000539232 TAOK3Q9H2K8 898 aa9.34□□□□□ -0.91
LMO3-220ENST00000539232 PI4KAP2A4QPH2 592 aa9.33□□□□□ -0.92
LMO3-220ENST00000539232 SLC4A2P04920 1241 aa9.33□□□□□ -0.92
LMO3-220ENST00000539232 NCBP3Q53F19 620 aaKnown RBP9.33□□□□□ -0.92
LMO3-220ENST00000539232 PARP10Q53GL7 1025 aa9.33□□□□□ -0.92
LMO3-220ENST00000539232 RIC3Q7Z5B4 369 aa9.33□□□□□ -0.92
LMO3-220ENST00000539232 PI4KAP1Q8N8J0 262 aa9.33□□□□□ -0.92
LMO3-220ENST00000539232 NYXQ9GZU5 481 aa9.33□□□□□ -0.92
LMO3-220ENST00000539232 ZNF277Q9NRM2 450 aaPredicted RBP9.33□□□□□ -0.92
LMO3-220ENST00000539232 MAP3K2Q9Y2U5 619 aa9.33□□□□□ -0.92
LMO3-220ENST00000539232 SNED1Q8TER0 1413 aa9.32□□□□□ -0.92
LMO3-220ENST00000539232 CWF19L2Q2TBE0 894 aaKnown RBP9.32□□□□□ -0.92
LMO3-220ENST00000539232 CCDC30Q5VVM6 783 aa9.32□□□□□ -0.92
LMO3-220ENST00000539232 CIAPIN1Q6FI81 312 aa9.32□□□□□ -0.92
LMO3-220ENST00000539232 HHIPL1Q96JK4 782 aa9.32□□□□□ -0.92
LMO3-220ENST00000539232 IBTKQ9P2D0 1353 aaPredicted RBP9.32□□□□□ -0.92
LMO3-220ENST00000539232 ABCC4O15439 1325 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 SH3TC1Q8TE82 1336 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 WTIPA6NIX2 430 aaPredicted RBP9.31□□□□□ -0.92
LMO3-220ENST00000539232 F6X3S4 739 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 TRIM28Q13263 835 aaKnown RBP9.31□□□□□ -0.92
LMO3-220ENST00000539232 CST9Q5W186 159 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 KSR2Q6VAB6 950 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 PPP1R42Q7Z4L9 355 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 CCDC85AQ96PX6 553 aaPredicted RBP9.31□□□□□ -0.92
LMO3-220ENST00000539232 METTL22Q9BUU2 404 aaPredicted RBP9.31□□□□□ -0.92
LMO3-220ENST00000539232 SEC31BQ9NQW1 1179 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 COL4A1P02462 1669 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 BCORQ6W2J9 1755 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 ANKRD31Q8N7Z5 1873 aa9.31□□□□□ -0.92
LMO3-220ENST00000539232 COL11A2P13942 1736 aaPredicted RBP9.31□□□□□ -0.92
LMO3-220ENST00000539232 TRIOBPQ9H2D6 2365 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 CCER2I3L3R5 266 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 GOLGA2Q08379 1002 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 FLIIQ13045 1269 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 HSP90AB3PQ58FF7 597 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 CTU1Q7Z7A3 348 aaKnown RBP9.3□□□□□ -0.92
LMO3-220ENST00000539232 SAPCD2Q86UD0 394 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 RPGRQ92834 1020 aaKnown RBP9.3□□□□□ -0.92
LMO3-220ENST00000539232 CELF1Q92879 486 aaKnown RBP9.3□□□□□ -0.92
LMO3-220ENST00000539232 NLRP3Q96P20 1036 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 CRAMP1Q96RY5 1269 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 PDZRN3Q9UPQ7 1066 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 HPS5Q9UPZ3 1129 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 ZNF541Q9H0D2 1346 aa9.3□□□□□ -0.92
LMO3-220ENST00000539232 LAMB4A4D0S4 1761 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 COL4A5P29400 1685 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 IRS4O14654 1257 aaPredicted RBP9.29□□□□□ -0.92
LMO3-220ENST00000539232 PPEF1O14829 653 aaPredicted RBP9.29□□□□□ -0.92
LMO3-220ENST00000539232 FMR1Q06787 632 aaKnown RBP eCLIP9.29□□□□□ -0.92
LMO3-220ENST00000539232 SLFN5Q08AF3 891 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 CCDC93Q567U6 631 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 RBM17Q96I25 401 aaKnown RBP9.29□□□□□ -0.92
LMO3-220ENST00000539232 ANP32EQ9BTT0 268 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 BCL11AQ9H165 835 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 SAGE1Q9NXZ1 904 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 RIC1Q4ADV7 1423 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 RNF123Q5XPI4 1314 aa9.29□□□□□ -0.92
LMO3-220ENST00000539232 NEURL1BA8MQ27 555 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 ALDH1B1P30837 517 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 CASP7P55210 303 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 FKBP4Q02790 459 aaKnown RBP eCLIP9.28□□□□□ -0.92
LMO3-220ENST00000539232 NOGQ13253 232 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 SF3B3Q15393 1217 aaKnown RBP9.28□□□□□ -0.92
LMO3-220ENST00000539232 PKN2Q16513 984 aaKnown RBP9.28□□□□□ -0.92
LMO3-220ENST00000539232 SOGA3Q5TF21 947 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 ERICH6Q7L0X2 663 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 TRMT2AQ8IZ69 625 aaKnown RBP9.28□□□□□ -0.92
LMO3-220ENST00000539232 ZBTB38Q8NAP3 1195 aaPredicted RBP9.28□□□□□ -0.92
LMO3-220ENST00000539232 BCL2L13Q9BXK5 485 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 STK31Q9BXU1 1019 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 ATP6V0A2Q9Y487 856 aa9.28□□□□□ -0.92
LMO3-220ENST00000539232 SLX4Q8IY92 1834 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms