RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 MCM10Q7L590 875 aa16.09■□□□□ 0.17
YBX3-207ENST00000539204 SAMD7Q7Z3H4 446 aa16.09■□□□□ 0.17
YBX3-207ENST00000539204 PPP1R42Q7Z4L9 355 aa16.09■□□□□ 0.17
YBX3-207ENST00000539204 DPF2Q92785 391 aa16.09■□□□□ 0.17
YBX3-207ENST00000539204 RIC1Q4ADV7 1423 aa16.09■□□□□ 0.17
YBX3-207ENST00000539204 PRKAR2BP31323 418 aa16.08■□□□□ 0.16
YBX3-207ENST00000539204 HABP4Q5JVS0 413 aaKnown RBP16.08■□□□□ 0.16
YBX3-207ENST00000539204 ZNF34Q8IZ26 560 aa16.08■□□□□ 0.16
YBX3-207ENST00000539204 RRP7AQ9Y3A4 280 aaKnown RBP16.08■□□□□ 0.16
YBX3-207ENST00000539204 UBN2Q6ZU65 1347 aa16.08■□□□□ 0.16
YBX3-207ENST00000539204 SLC10A3P09131 477 aa16.07■□□□□ 0.16
YBX3-207ENST00000539204 TAF7Q15545 349 aaPredicted RBP16.07■□□□□ 0.16
YBX3-207ENST00000539204 TBC1D10BQ4KMP7 808 aaPredicted RBP16.07■□□□□ 0.16
YBX3-207ENST00000539204 RBM26Q5T8P6 1007 aaKnown RBP16.07■□□□□ 0.16
YBX3-207ENST00000539204 TTLL7Q6ZT98 887 aa16.07■□□□□ 0.16
YBX3-207ENST00000539204 ZBTB12Q9Y330 459 aaPredicted RBP16.07■□□□□ 0.16
YBX3-207ENST00000539204 IBTKQ9P2D0 1353 aaPredicted RBP16.07■□□□□ 0.16
YBX3-207ENST00000539204 ABCC4O15439 1325 aa16.06■□□□□ 0.16
YBX3-207ENST00000539204 NTSR2O95665 410 aa16.06■□□□□ 0.16
YBX3-207ENST00000539204 SLC10A5Q5PT55 438 aa16.06■□□□□ 0.16
YBX3-207ENST00000539204 ZBTB3Q9H5J0 574 aa16.06■□□□□ 0.16
YBX3-207ENST00000539204 YDJCA8MPS7 323 aa16.05■□□□□ 0.16
YBX3-207ENST00000539204 ADM5C9JUS6 153 aa16.05■□□□□ 0.16
YBX3-207ENST00000539204 MYL6BP14649 208 aa16.05■□□□□ 0.16
YBX3-207ENST00000539204 PARP10Q53GL7 1025 aa16.05■□□□□ 0.16
YBX3-207ENST00000539204 MIS18AQ9NYP9 233 aa16.05■□□□□ 0.16
YBX3-207ENST00000539204 AKAP11Q9UKA4 1901 aa16.05■□□□□ 0.16
YBX3-207ENST00000539204 PER1O15534 1290 aaPredicted RBP16.04■□□□□ 0.16
YBX3-207ENST00000539204 HTATSF1O43719 755 aaKnown RBP16.04■□□□□ 0.16
YBX3-207ENST00000539204 DCTN1Q14203 1278 aa16.04■□□□□ 0.16
YBX3-207ENST00000539204 GIGYF2Q6Y7W6 1299 aaKnown RBP16.04■□□□□ 0.16
YBX3-207ENST00000539204 SULF1Q8IWU6 871 aa16.04■□□□□ 0.16
YBX3-207ENST00000539204 ZNF296Q8WUU4 475 aaPredicted RBP16.04■□□□□ 0.16
YBX3-207ENST00000539204 UTP14AQ9BVJ6 771 aaKnown RBP16.04■□□□□ 0.16
YBX3-207ENST00000539204 RSPH6AQ9H0K4 717 aa16.04■□□□□ 0.16
YBX3-207ENST00000539204 PSMD14O00487 310 aa16.03■□□□□ 0.16
YBX3-207ENST00000539204 TBC1D8O95759 1140 aa16.03■□□□□ 0.16
YBX3-207ENST00000539204 DDX46Q7L014 1031 aaKnown RBP16.03■□□□□ 0.16
YBX3-207ENST00000539204 EGFRP00533 1210 aa16.02■□□□□ 0.16
YBX3-207ENST00000539204 RPS12P25398 132 aaKnown RBP16.02■□□□□ 0.16
YBX3-207ENST00000539204 WASHC4Q2M389 1173 aa16.02■□□□□ 0.16
YBX3-207ENST00000539204 NUP98P52948 1817 aa16.01■□□□□ 0.15
YBX3-207ENST00000539204 CNGB1Q14028 1251 aaPredicted RBP16.01■□□□□ 0.15
YBX3-207ENST00000539204 FBXO46Q6PJ61 603 aaPredicted RBP16.01■□□□□ 0.15
YBX3-207ENST00000539204 RASAL3Q86YV0 1011 aa16.01■□□□□ 0.15
YBX3-207ENST00000539204 NUDCQ9Y266 331 aa16.01■□□□□ 0.15
YBX3-207ENST00000539204 POLR2AP24928 1970 aaKnown RBP16■□□□□ 0.15
YBX3-207ENST00000539204 FKBP1BP68106 108 aa16■□□□□ 0.15
YBX3-207ENST00000539204 PNISRQ8TF01 805 aaKnown RBP16■□□□□ 0.15
YBX3-207ENST00000539204 CDCA5Q96FF9 252 aa16■□□□□ 0.15
YBX3-207ENST00000539204 COL3A1P02461 1466 aaPredicted RBP15.99■□□□□ 0.15
YBX3-207ENST00000539204 GRAPQ13588 217 aa15.99■□□□□ 0.15
YBX3-207ENST00000539204 KIF4BQ2VIQ3 1234 aa15.99■□□□□ 0.15
YBX3-207ENST00000539204 TMC4Q7Z404 712 aa15.99■□□□□ 0.15
YBX3-207ENST00000539204 GRAPLQ8TC17 118 aaPredicted RBP15.99■□□□□ 0.15
YBX3-207ENST00000539204 CFAP53Q96M91 514 aa15.99■□□□□ 0.15
YBX3-207ENST00000539204 DBNDD1Q9H9R9 158 aa15.99■□□□□ 0.15
YBX3-207ENST00000539204 GPR25O00155 361 aa15.98■□□□□ 0.15
YBX3-207ENST00000539204 RIMBP2O15034 1052 aa15.98■□□□□ 0.15
YBX3-207ENST00000539204 U2AF1L5P0DN76 240 aaPredicted RBP15.98■□□□□ 0.15
YBX3-207ENST00000539204 HCLS1P14317 486 aaPredicted RBP15.98■□□□□ 0.15
YBX3-207ENST00000539204 U2AF1Q01081 240 aaKnown RBP eCLIP15.98■□□□□ 0.153e-16■■□□□ 13.9
YBX3-207ENST00000539204 KCNQ5Q9NR82 932 aa15.98■□□□□ 0.15
YBX3-207ENST00000539204 GGA3Q9NZ52 723 aa15.98■□□□□ 0.15
YBX3-207ENST00000539204 NSFL1CQ9UNZ2 370 aaKnown RBP15.98■□□□□ 0.15
YBX3-207ENST00000539204 EIF4A1P60842 406 aaKnown RBP15.97■□□□□ 0.15
YBX3-207ENST00000539204 NOM1Q5C9Z4 860 aaKnown RBP15.97■□□□□ 0.15
YBX3-207ENST00000539204 C6orf229H3BNL8 230 aa15.96■□□□□ 0.15
YBX3-207ENST00000539204 TM4SF4P48230 202 aa15.96■□□□□ 0.15
YBX3-207ENST00000539204 ECE2O60344 883 aa15.95■□□□□ 0.14
YBX3-207ENST00000539204 FKTNO75072 461 aa15.95■□□□□ 0.14
YBX3-207ENST00000539204 FXR1P51114 621 aaKnown RBP eCLIP15.95■□□□□ 0.14
YBX3-207ENST00000539204 SCARF1Q14162 830 aa15.95■□□□□ 0.14
YBX3-207ENST00000539204 DOK7Q18PE1 504 aa15.95■□□□□ 0.14
YBX3-207ENST00000539204 ANGEL2Q5VTE6 544 aaKnown RBP15.95■□□□□ 0.14
YBX3-207ENST00000539204 INTS3Q68E01 1043 aaKnown RBP15.95■□□□□ 0.14
YBX3-207ENST00000539204 TRMT112Q9UI30 125 aaKnown RBP15.95■□□□□ 0.14
YBX3-207ENST00000539204 ASTN2O75129 1339 aaPredicted RBP15.94■□□□□ 0.14
YBX3-207ENST00000539204 MKI67P46013 3256 aaKnown RBP15.94■□□□□ 0.14
YBX3-207ENST00000539204 VIL1P09327 827 aaKnown RBP15.94■□□□□ 0.14
YBX3-207ENST00000539204 EYA3Q99504 573 aa15.94■□□□□ 0.14
YBX3-207ENST00000539204 ERBB4Q15303 1308 aa15.94■□□□□ 0.14
YBX3-207ENST00000539204 UBE2Q2LH0YL09 131 aa15.93■□□□□ 0.14
YBX3-207ENST00000539204 HSP90AB3PQ58FF7 597 aa15.93■□□□□ 0.14
YBX3-207ENST00000539204 NLRP10Q86W26 655 aa15.93■□□□□ 0.14
YBX3-207ENST00000539204 THUMPD2Q9BTF0 503 aaKnown RBP15.93■□□□□ 0.14
YBX3-207ENST00000539204 POLLQ9UGP5 575 aa15.93■□□□□ 0.14
YBX3-207ENST00000539204 RTL9Q8NET4 1388 aa15.92■□□□□ 0.14
YBX3-207ENST00000539204 G3V3G9 751 aa15.92■□□□□ 0.14
YBX3-207ENST00000539204 DCAF8Q5TAQ9 597 aa15.92■□□□□ 0.14
YBX3-207ENST00000539204 MOB2Q70IA6 237 aa15.92■□□□□ 0.14
YBX3-207ENST00000539204 ZC3H12CQ9C0D7 883 aaKnown RBP15.92■□□□□ 0.14
YBX3-207ENST00000539204 SH3TC1Q8TE82 1336 aa15.92■□□□□ 0.14
YBX3-207ENST00000539204 POTEFA5A3E0 1075 aa15.91■□□□□ 0.14
YBX3-207ENST00000539204 GPSM2P81274 684 aa15.91■□□□□ 0.14
YBX3-207ENST00000539204 SREBF2Q12772 1141 aa15.91■□□□□ 0.14
YBX3-207ENST00000539204 TTLL12Q14166 644 aaPredicted RBP15.91■□□□□ 0.14
YBX3-207ENST00000539204 NEFMP07197 916 aa15.9■□□□□ 0.14
YBX3-207ENST00000539204 EIF2S2P20042 333 aaKnown RBP15.9■□□□□ 0.14
YBX3-207ENST00000539204 ZNF280AP59817 542 aaPredicted RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms