RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ZNF330Q9Y3S2 320 aaPredicted RBP8.14□□□□□ -1.11
USP28-207ENST00000538475 PCDHB9Q9Y5E1 797 aa8.14□□□□□ -1.11
USP28-207ENST00000538475 KIF24Q5T7B8 1368 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 A0A0U1RQG5 324 aaPredicted RBP8.13□□□□□ -1.11
USP28-207ENST00000538475 PLEKHD1A6NEE1 506 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 FBXO45P0C2W1 286 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 XPCQ01831 940 aaPredicted RBP8.13□□□□□ -1.11
USP28-207ENST00000538475 CHAF1AQ13111 956 aaPredicted RBP8.13□□□□□ -1.11
USP28-207ENST00000538475 ALDH1L2Q3SY69 923 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 CFAP53Q96M91 514 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 ZFP42Q96MM3 310 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 PURBQ96QR8 312 aaKnown RBP8.13□□□□□ -1.11
USP28-207ENST00000538475 OGFRQ9NZT2 677 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 DEPDC5O75140 1603 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 MAP3K4Q9Y6R4 1608 aa8.13□□□□□ -1.11
USP28-207ENST00000538475 NOS1P29475 1434 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 ABCA9Q8IUA7 1624 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 CDC45O75419 566 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 RLBP1P12271 317 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 SSFA2P28290 1259 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 NR1H3Q13133 447 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 FKBP5Q13451 457 aaPredicted RBP8.12□□□□□ -1.11
USP28-207ENST00000538475 INTS6LQ5JSJ4 861 aaKnown RBP8.12□□□□□ -1.11
USP28-207ENST00000538475 C6orf118Q5T5N4 469 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 ATF7IPQ6VMQ6 1270 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 CHD1LQ86WJ1 897 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 ANKRD7Q92527 254 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 ARHGAP45Q92619 1136 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 ZBTB40Q9NUA8 1239 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 ERCC6Q03468 1493 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 ZNF518AQ6AHZ1 1483 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 PTPRTO14522 1441 aa8.12□□□□□ -1.11
USP28-207ENST00000538475 PIK3R4Q99570 1358 aa8.11□□□□□ -1.11
USP28-207ENST00000538475 CTIFO43310 598 aaKnown RBP8.11□□□□□ -1.11
USP28-207ENST00000538475 BMP2P12643 396 aa8.11□□□□□ -1.11
USP28-207ENST00000538475 NOLC1Q14978 699 aaKnown RBP eCLIP8.11□□□□□ -1.11
USP28-207ENST00000538475 TAF7LQ5H9L4 462 aa8.11□□□□□ -1.11
USP28-207ENST00000538475 CAVIN1Q6NZI2 390 aaKnown RBP8.11□□□□□ -1.11
USP28-207ENST00000538475 CCDC146Q8IYE0 955 aa8.11□□□□□ -1.11
USP28-207ENST00000538475 TSPY26PQ9H489 355 aa8.11□□□□□ -1.11
USP28-207ENST00000538475 ERVK-7P63135 1459 aa8.11□□□□□ -1.11
USP28-207ENST00000538475 PPIP5K1Q6PFW1 1433 aa8.11□□□□□ -1.11
USP28-207ENST00000538475 TRAPPC8Q9Y2L5 1435 aa8.11□□□□□ -1.11
USP28-207ENST00000538475 EPB41L2O43491 1005 aaKnown RBP8.1□□□□□ -1.11
USP28-207ENST00000538475 PTMAP06454 111 aaKnown RBP8.1□□□□□ -1.11
USP28-207ENST00000538475 GTF2E1P29083 439 aaPredicted RBP8.1□□□□□ -1.11
USP28-207ENST00000538475 TCP11L2Q8N4U5 519 aa8.1□□□□□ -1.11
USP28-207ENST00000538475 ZNF592Q92610 1267 aa8.1□□□□□ -1.11
USP28-207ENST00000538475 USP25Q9UHP3 1055 aa8.1□□□□□ -1.11
USP28-207ENST00000538475 ASXL2Q76L83 1435 aa8.1□□□□□ -1.11
USP28-207ENST00000538475 CACNA1FO60840 1977 aa8.1□□□□□ -1.11
USP28-207ENST00000538475 ANKRD36BQ8N2N9 1353 aa8.1□□□□□ -1.11
USP28-207ENST00000538475 TUBGCP6Q96RT7 1819 aa8.09□□□□□ -1.11
USP28-207ENST00000538475 GOLGA6L6A8MZA4 724 aa8.09□□□□□ -1.11
USP28-207ENST00000538475 PDIA4P13667 645 aaKnown RBP8.09□□□□□ -1.11
USP28-207ENST00000538475 DNTTIP2Q5QJE6 756 aaKnown RBP8.09□□□□□ -1.11
USP28-207ENST00000538475 MCTP1Q6DN14 999 aa8.09□□□□□ -1.11
USP28-207ENST00000538475 LINC00528Q8N1L1 170 aa8.09□□□□□ -1.11
USP28-207ENST00000538475 MEIOBQ8N635 442 aa8.09□□□□□ -1.11
USP28-207ENST00000538475 GAS2L2Q8NHY3 880 aa8.09□□□□□ -1.11
USP28-207ENST00000538475 INTS4Q96HW7 963 aaKnown RBP8.09□□□□□ -1.11
USP28-207ENST00000538475 DNAJC2Q99543 621 aaKnown RBP8.09□□□□□ -1.11
USP28-207ENST00000538475 TSEN34Q9BSV6 310 aaKnown RBP8.09□□□□□ -1.11
USP28-207ENST00000538475 ZHX1Q9UKY1 873 aaPredicted RBP8.09□□□□□ -1.11
USP28-207ENST00000538475 TBC1D2BQ9UPU7 963 aa8.09□□□□□ -1.11
USP28-207ENST00000538475 MCCD1P59942 119 aaPredicted RBP8.08□□□□□ -1.12
USP28-207ENST00000538475 CBLBQ13191 982 aa8.08□□□□□ -1.12
USP28-207ENST00000538475 CASC1Q6TDU7 716 aa8.08□□□□□ -1.12
USP28-207ENST00000538475 TREML4Q6UXN2 200 aa8.08□□□□□ -1.12
USP28-207ENST00000538475 TMEM51Q9NW97 253 aa8.08□□□□□ -1.12
USP28-207ENST00000538475 CALCOCO1Q9P1Z2 691 aa8.08□□□□□ -1.12
USP28-207ENST00000538475 CGNQ9P2M7 1197 aaKnown RBP8.08□□□□□ -1.12
USP28-207ENST00000538475 ZNF777Q9ULD5 760 aaPredicted RBP8.08□□□□□ -1.12
USP28-207ENST00000538475 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP28-207ENST00000538475 QRICH2Q9H0J4 1663 aa8.08□□□□□ -1.12
USP28-207ENST00000538475 ATP10BO94823 1461 aa8.07□□□□□ -1.12
USP28-207ENST00000538475 ERVH48-1M5A8F1 160 aa8.07□□□□□ -1.12
USP28-207ENST00000538475 GIGYF1O75420 1035 aaPredicted RBP8.07□□□□□ -1.12
USP28-207ENST00000538475 TRIM27P14373 513 aa8.07□□□□□ -1.12
USP28-207ENST00000538475 INTS3Q68E01 1043 aaKnown RBP8.07□□□□□ -1.12
USP28-207ENST00000538475 TBC1D9Q6ZT07 1266 aa8.07□□□□□ -1.12
USP28-207ENST00000538475 SEPT12Q8IYM1 358 aa8.07□□□□□ -1.12
USP28-207ENST00000538475 TMEM87AQ8NBN3 555 aa8.07□□□□□ -1.12
USP28-207ENST00000538475 IL17RAQ96F46 866 aa8.07□□□□□ -1.12
USP28-207ENST00000538475 TMPRSS4Q9NRS4 437 aa8.07□□□□□ -1.12
USP28-207ENST00000538475 NAP1L2Q9ULW6 460 aaPredicted RBP8.07□□□□□ -1.12
USP28-207ENST00000538475 NRXN1Q9ULB1 1477 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 CDC42BPGQ6DT37 1551 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 PTCH1Q13635 1447 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 MAN1A2O60476 641 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 REC8O95072 547 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 CDK11BP21127 795 aaKnown RBP8.06□□□□□ -1.12
USP28-207ENST00000538475 ABL2P42684 1182 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 RGL3Q3MIN7 710 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 RNF20Q5VTR2 975 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 GPT2Q8TD30 523 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 GDPD2Q9HCC8 539 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 SMC4Q9NTJ3 1288 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 PAXBP1Q9Y5B6 917 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 MORC2Q9Y6X9 1032 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms