RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 GNPATO15228 680 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 IGHDP01880 384 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 CCDC96Q2M329 555 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 IFNL2Q8IZJ0 200 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 SLC24A3Q9HC58 644 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 TMOD3Q9NYL9 352 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 ISY1Q9ULR0 285 aaKnown RBP8.28□□□□□ -1.08
PTPRB-203ENST00000538174 ABCC4O15439 1325 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 A0A087WZG4 1122 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 CYP27B1O15528 508 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 ITGBL1O95965 494 aaPredicted RBP8.28□□□□□ -1.08
PTPRB-203ENST00000538174 MKRN3Q13064 507 aaKnown RBP8.28□□□□□ -1.08
PTPRB-203ENST00000538174 SEMA3FQ13275 785 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 MAPK8IP2Q13387 824 aaPredicted RBP8.28□□□□□ -1.08
PTPRB-203ENST00000538174 PKN2Q16513 984 aaKnown RBP8.28□□□□□ -1.08
PTPRB-203ENST00000538174 PPP4R3CPQ6ZMV5 832 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 MPNDQ8N594 471 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 TTLL6Q8N841 843 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 SUGT1Q9Y2Z0 365 aa8.28□□□□□ -1.08
PTPRB-203ENST00000538174 COL11A2P13942 1736 aaPredicted RBP8.28□□□□□ -1.08
PTPRB-203ENST00000538174 EPB41L2O43491 1005 aaKnown RBP8.27□□□□□ -1.08
PTPRB-203ENST00000538174 RBM26Q5T8P6 1007 aaKnown RBP8.27□□□□□ -1.08
PTPRB-203ENST00000538174 ANP32BQ92688 251 aaKnown RBP8.27□□□□□ -1.08
PTPRB-203ENST00000538174 FBXW7Q969H0 707 aa8.27□□□□□ -1.08
PTPRB-203ENST00000538174 SNX21Q969T3 373 aa8.27□□□□□ -1.08
PTPRB-203ENST00000538174 API5Q9BZZ5 524 aaKnown RBP8.27□□□□□ -1.08
PTPRB-203ENST00000538174 MYH14Q7Z406 1995 aaKnown RBP8.27□□□□□ -1.09
PTPRB-203ENST00000538174 A0A0G2JLW4 131 aa8.27□□□□□ -1.09
PTPRB-203ENST00000538174 CAPN2P17655 700 aa8.27□□□□□ -1.09
PTPRB-203ENST00000538174 VEGFBP49765 207 aa8.27□□□□□ -1.09
PTPRB-203ENST00000538174 FOXD4Q12950 439 aaPredicted RBP8.27□□□□□ -1.09
PTPRB-203ENST00000538174 ITPK1Q13572 414 aa8.27□□□□□ -1.09
PTPRB-203ENST00000538174 MYBPC2Q14324 1141 aa8.27□□□□□ -1.09
PTPRB-203ENST00000538174 NME9Q86XW9 330 aa8.27□□□□□ -1.09
PTPRB-203ENST00000538174 SPATA32Q96LK8 384 aa8.27□□□□□ -1.09
PTPRB-203ENST00000538174 WDR33Q9C0J8 1336 aaKnown RBP8.27□□□□□ -1.09
PTPRB-203ENST00000538174 TESPA1A2RU30 521 aaPredicted RBP8.26□□□□□ -1.09
PTPRB-203ENST00000538174 RFC4P35249 363 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 IRF5Q13568 498 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 ARHGEF1Q92888 912 aaKnown RBP8.26□□□□□ -1.09
PTPRB-203ENST00000538174 RPS6KL1Q9Y6S9 549 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 PTPRCP08575 1304 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 AMPHP49418 695 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 NUCB1Q02818 461 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 DEFB115Q30KQ5 88 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 SYTL4Q96C24 671 aaPredicted RBP8.26□□□□□ -1.09
PTPRB-203ENST00000538174 ATG3Q9NT62 314 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 PCDHB15Q9Y5E8 787 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 PDE6BP35913 854 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 RIPK4P57078 832 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 AMOTQ4VCS5 1084 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 ARMCX6Q7L4S7 300 aa8.26□□□□□ -1.09
PTPRB-203ENST00000538174 CIZ1Q9ULV3 898 aaPredicted RBP8.26□□□□□ -1.09
PTPRB-203ENST00000538174 ZNF609O15014 1411 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 IRF6O14896 467 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 TRIM27P14373 513 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 PHKG2P15735 406 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 ATP6V1AP38606 617 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 BMP2KLQ5H9B9 411 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 GORABQ5T7V8 394 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 NBPF6Q5VWK0 638 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 CASC1Q6TDU7 716 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 CNKSR1Q969H4 720 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 NBPF4Q96M43 638 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 COG6Q9Y2V7 657 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 TLL2Q9Y6L7 1015 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 DUOX1Q9NRD9 1551 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 VAMP4O75379 141 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 LBX1P52954 281 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 INTS3Q68E01 1043 aaKnown RBP8.25□□□□□ -1.09
PTPRB-203ENST00000538174 MRPL50Q8N5N7 158 aaKnown RBP8.25□□□□□ -1.09
PTPRB-203ENST00000538174 CEP120Q8N960 986 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 SSH1Q8WYL5 1049 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 TAF1DQ9H5J8 278 aaPredicted RBP8.25□□□□□ -1.09
PTPRB-203ENST00000538174 NARFQ9UHQ1 456 aa8.25□□□□□ -1.09
PTPRB-203ENST00000538174 UNCXA6NJT0 531 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 VGLL3A8MV65 326 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 NFKBIEO00221 500 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 EXOSC9Q06265 439 aaKnown RBP8.24□□□□□ -1.09
PTPRB-203ENST00000538174 BRIP1Q9BX63 1249 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 DDX60Q8IY21 1712 aaKnown RBP8.24□□□□□ -1.09
PTPRB-203ENST00000538174 RIOK3O14730 519 aaKnown RBP8.24□□□□□ -1.09
PTPRB-203ENST00000538174 RLBP1P12271 317 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 PANK1Q8TE04 598 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 IL17RAQ96F46 866 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 BEGAINQ9BUH8 593 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 SMC4Q9NTJ3 1288 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 PGAP2Q9UHJ9 254 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 SNED1Q8TER0 1413 aa8.24□□□□□ -1.09
PTPRB-203ENST00000538174 KLRG2A4D1S0 409 aaPredicted RBP8.23□□□□□ -1.09
PTPRB-203ENST00000538174 ZBTB7BO15156 539 aaPredicted RBP8.23□□□□□ -1.09
PTPRB-203ENST00000538174 DDR1Q08345 913 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 AMIGO3Q86WK7 504 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 MTA3Q9BTC8 594 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 GGNBP2Q9H3C7 697 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 ANTXR1Q9H6X2 564 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 STK24Q9Y6E0 443 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 CHL1O00533 1208 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 CLEC17AQ6ZS10 378 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 USP50Q70EL3 339 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms