RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 LIG1P18858 919 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 PLCB2Q00722 1185 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 GCKRQ14397 625 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 IFNL2Q8IZJ0 200 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 TSC1Q92574 1164 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 METTL22Q9BUU2 404 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-234ENST00000536990 BOLA2Q9H3K6 86 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 TLR7Q9NYK1 1049 aaKnown RBP13.72□□□□□ -0.21
SYNE1-234ENST00000536990 PYCARDQ9ULZ3 195 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 TAF6LQ9Y6J9 622 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 JCADQ9P266 1359 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 MED23Q9ULK4 1368 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 FAM173BQ6P4H8 233 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 FERMT3Q86UX7 667 aa13.72□□□□□ -0.21
SYNE1-234ENST00000536990 ZNF496Q96IT1 587 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-234ENST00000536990 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.72□□□□□ -0.21
SYNE1-234ENST00000536990 MST1RQ04912 1400 aa13.71□□□□□ -0.21
SYNE1-234ENST00000536990 TPM3P06753 285 aa13.71□□□□□ -0.21
SYNE1-234ENST00000536990 CSB-PGBD3P0DP91 1061 aa13.71□□□□□ -0.21
SYNE1-234ENST00000536990 KLHDC4Q8TBB5 520 aa13.71□□□□□ -0.21
SYNE1-234ENST00000536990 FAM200AQ8TCP9 573 aa13.71□□□□□ -0.21
SYNE1-234ENST00000536990 MRVI1Q9Y6F6 885 aa13.71□□□□□ -0.21
SYNE1-234ENST00000536990 PDCP20941 246 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 RPS6KB1P23443 525 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 TOB2Q14106 344 aaPredicted RBP13.71□□□□□ -0.22
SYNE1-234ENST00000536990 MAP3K11Q16584 847 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 BLOC1S2Q6QNY1 142 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 ANKRD13DQ6ZTN6 518 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 TTC5Q8N0Z6 440 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 FSD1Q9BTV5 496 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 NUP62CLQ9H1M0 184 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 C5P01031 1676 aa13.71□□□□□ -0.22
SYNE1-234ENST00000536990 ALS2Q96Q42 1657 aa13.7□□□□□ -0.22
SYNE1-234ENST00000536990 TCEANC2Q96MN5 208 aa13.7□□□□□ -0.22
SYNE1-234ENST00000536990 SNRPA1P09661 255 aaKnown RBP13.7□□□□□ -0.22
SYNE1-234ENST00000536990 ATF3P18847 181 aa13.7□□□□□ -0.22
SYNE1-234ENST00000536990 TYRO3Q06418 890 aa13.7□□□□□ -0.22
SYNE1-234ENST00000536990 ANKRD1Q15327 319 aa13.7□□□□□ -0.22
SYNE1-234ENST00000536990 EPHA10Q5JZY3 1008 aa13.7□□□□□ -0.22
SYNE1-234ENST00000536990 USP16Q9Y5T5 823 aa13.7□□□□□ -0.22
SYNE1-234ENST00000536990 TSGA10IPQ3SY00 556 aa13.69□□□□□ -0.22
SYNE1-234ENST00000536990 SPC24Q8NBT2 197 aa13.69□□□□□ -0.22
SYNE1-234ENST00000536990 MRC1P22897 1456 aa13.69□□□□□ -0.22
SYNE1-234ENST00000536990 RNF20Q5VTR2 975 aa13.69□□□□□ -0.22
SYNE1-234ENST00000536990 CCDC94Q9BW85 323 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-234ENST00000536990 CHMP3Q9Y3E7 222 aa13.69□□□□□ -0.22
SYNE1-234ENST00000536990 CAMK4Q16566 473 aa13.69□□□□□ -0.22
SYNE1-234ENST00000536990 RBM43Q6ZSC3 357 aaKnown RBP13.69□□□□□ -0.22
SYNE1-234ENST00000536990 ZNF589Q86UQ0 364 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-234ENST00000536990 DDX17Q92841 729 aaKnown RBP13.69□□□□□ -0.22
SYNE1-234ENST00000536990 DCAF5Q96JK2 942 aa13.69□□□□□ -0.22
SYNE1-234ENST00000536990 MEGF6O75095 1541 aa13.68□□□□□ -0.22
SYNE1-234ENST00000536990 SCAND2PQ9GZW5 306 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-234ENST00000536990 PIP4K2AP48426 406 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-234ENST00000536990 LUZP1Q86V48 1076 aa13.68□□□□□ -0.22
SYNE1-234ENST00000536990 LEO1Q8WVC0 666 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-234ENST00000536990 FMNL2Q96PY5 1086 aa13.68□□□□□ -0.22
SYNE1-234ENST00000536990 ARID3AQ99856 593 aa13.68□□□□□ -0.22
SYNE1-234ENST00000536990 COPRSQ9NQ92 184 aa13.68□□□□□ -0.22
SYNE1-234ENST00000536990 DACT1Q9NYF0 836 aa13.68□□□□□ -0.22
SYNE1-234ENST00000536990 HMG20BQ9P0W2 317 aa13.68□□□□□ -0.22
SYNE1-234ENST00000536990 KIF3AQ9Y496 699 aa13.68□□□□□ -0.22
SYNE1-234ENST00000536990 GOLGA6L6A8MZA4 724 aa13.67□□□□□ -0.22
SYNE1-234ENST00000536990 USPL1Q5W0Q7 1092 aa13.67□□□□□ -0.22
SYNE1-234ENST00000536990 CYP27B1O15528 508 aa13.67□□□□□ -0.22
SYNE1-234ENST00000536990 TAF5LO75529 589 aa13.67□□□□□ -0.22
SYNE1-234ENST00000536990 LRP10Q7Z4F1 713 aa13.67□□□□□ -0.22
SYNE1-234ENST00000536990 CABLES1Q8TDN4 633 aa13.67□□□□□ -0.22
SYNE1-234ENST00000536990 TFIP11Q9UBB9 837 aaKnown RBP13.67□□□□□ -0.22
SYNE1-234ENST00000536990 CKAP2LQ8IYA6 745 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 SPATA32Q96LK8 384 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 TNMDQ9H2S6 317 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 CLSTN2Q9H4D0 955 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 CBX8Q9HC52 389 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 DDX19AQ9NUU7 478 aaKnown RBP13.66□□□□□ -0.22
SYNE1-234ENST00000536990 COL15A1P39059 1388 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 PTGS1P23219 599 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 CHRNA2Q15822 529 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 ANO6Q4KMQ2 910 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 UBE3BQ7Z3V4 1068 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 SMAP1Q8IYB5 467 aaPredicted RBP13.66□□□□□ -0.22
SYNE1-234ENST00000536990 FAM177BA6PVY3 158 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 CABP4P57796 275 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 PTPN12Q05209 780 aaKnown RBP13.66□□□□□ -0.22
SYNE1-234ENST00000536990 PGBD1Q96JS3 809 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 PRDM4Q9UKN5 801 aa13.66□□□□□ -0.22
SYNE1-234ENST00000536990 RFX5P48382 616 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-234ENST00000536990 STK3Q13188 491 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 EDC3Q96F86 508 aaKnown RBP13.65□□□□□ -0.22
SYNE1-234ENST00000536990 BCL2L12Q9HB09 334 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 COL18A1P39060 1754 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 ATP5J2-PTCD1G3V325 749 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 PTCD1O75127 700 aaKnown RBP13.65□□□□□ -0.22
SYNE1-234ENST00000536990 ATP5JP18859 108 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 TFCP2Q12800 502 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 TNNI3KQ59H18 835 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 GTF3C6Q969F1 213 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 DBNLQ9UJU6 430 aaKnown RBP13.65□□□□□ -0.22
SYNE1-234ENST00000536990 FPGT-TNNI3KV9GXZ4 949 aa13.65□□□□□ -0.22
SYNE1-234ENST00000536990 AFDNP55196 1824 aaKnown RBP13.65□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms