RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 SATB1Q01826 763 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 TPD52L1Q16890 204 aaPredicted RBP4.44□□□□□ -1.7
MCF2-210ENST00000536274 TBC1D9Q6ZT07 1266 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 FBXO22Q8NEZ5 403 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 TSPYL1Q9H0U9 437 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 ROBO2Q9HCK4 1378 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 DRC7Q8IY82 874 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 ZNF397Q8NF99 534 aaPredicted RBP4.44□□□□□ -1.7
MCF2-210ENST00000536274 LARP6Q9BRS8 491 aaKnown RBP4.44□□□□□ -1.7
MCF2-210ENST00000536274 FHOD1Q9Y613 1164 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 SPATA31A3Q5VYP0 1347 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 MAP3K5Q99683 1374 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 CYP2E1P05181 493 aaPredicted RBP4.44□□□□□ -1.7
MCF2-210ENST00000536274 TTC31Q49AM3 519 aaPredicted RBP4.44□□□□□ -1.7
MCF2-210ENST00000536274 PLEKHO1Q53GL0 409 aaPredicted RBP4.44□□□□□ -1.7
MCF2-210ENST00000536274 ISM2Q6H9L7 571 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 SRLQ86TD4 932 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 KIF1BPQ96EK5 621 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 CCDC9Q9Y3X0 531 aaKnown RBP4.44□□□□□ -1.7
MCF2-210ENST00000536274 SLIT3O75094 1523 aa4.44□□□□□ -1.7
MCF2-210ENST00000536274 SBF2Q86WG5 1849 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 KDM4AO75164 1064 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 ZMYND10O75800 440 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 ATP2B1P20020 1258 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 LMAN1P49257 510 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 NUTM2GQ5VZR2 741 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 QTRT2Q9H974 415 aaKnown RBP4.43□□□□□ -1.7
MCF2-210ENST00000536274 GPBP1L1Q9HC44 474 aaPredicted RBP4.43□□□□□ -1.7
MCF2-210ENST00000536274 PICK1Q9NRD5 415 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 PDRG1Q9NUG6 133 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 FAM53CQ9NYF3 392 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 SMTNL1A8MU46 457 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 GOLGA6L6A8MZA4 724 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 PPP2R1AP30153 589 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 RARSP54136 660 aaKnown RBP4.43□□□□□ -1.7
MCF2-210ENST00000536274 PDE3AQ14432 1141 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 DPY19L2Q6NUT2 758 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 USP48Q86UV5 1035 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 ITPRIPQ8IWB1 547 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 TRMT2AQ8IZ69 625 aaKnown RBP4.43□□□□□ -1.7
MCF2-210ENST00000536274 KIRREL3Q8IZU9 778 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 DONSONQ9NYP3 566 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.43□□□□□ -1.7
MCF2-210ENST00000536274 PAPPAQ13219 1627 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 YTHDC2Q9H6S0 1430 aaKnown RBP4.43□□□□□ -1.7
MCF2-210ENST00000536274 AKAP12Q02952 1782 aa4.43□□□□□ -1.7
MCF2-210ENST00000536274 REC8O95072 547 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 PNMA6AP0CW24 399 aaPredicted RBP4.42□□□□□ -1.7
MCF2-210ENST00000536274 MAP2K1Q02750 393 aaPredicted RBP4.42□□□□□ -1.7
MCF2-210ENST00000536274 ANKRD45Q5TZF3 282 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 NAIF1Q69YI7 327 aaPredicted RBP4.42□□□□□ -1.7
MCF2-210ENST00000536274 UNC5CLQ8IV45 518 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 FRMD3A2A2Y4 597 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 APBB1O00213 710 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 INHBEP58166 350 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 CAMK4Q16566 473 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 CCDC27Q2M243 656 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 CEP135Q66GS9 1140 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 CLEC17AQ6ZS10 378 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 RPAINQ86UA6 219 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 LUZP1Q86V48 1076 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 GJD4Q96KN9 370 aaPredicted RBP4.42□□□□□ -1.7
MCF2-210ENST00000536274 USP26Q9BXU7 913 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 RABEP2Q9H5N1 569 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 NHSQ6T4R5 1651 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 RGPD8O14715 1765 aaPredicted RBP4.42□□□□□ -1.7
MCF2-210ENST00000536274 CPDO75976 1380 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 NPC1L1Q9UHC9 1359 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 A0A087WWV3 80 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 SASH3O75995 380 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 OAS2P29728 719 aaKnown RBP4.42□□□□□ -1.7
MCF2-210ENST00000536274 CCDC144BQ3MJ40 725 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 LRCH2Q5VUJ6 765 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 REXO1L1PQ8IX06 675 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 CCDC144CPQ8IYA2 1237 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 DEF6Q9H4E7 631 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 MIS18AQ9NYP9 233 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 BIN2Q9UBW5 565 aaPredicted RBP4.42□□□□□ -1.7
MCF2-210ENST00000536274 USP21Q9UK80 565 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 CNPY2Q9Y2B0 182 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 PTPRCP08575 1304 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 LRRC37A3O60309 1634 aa4.42□□□□□ -1.7
MCF2-210ENST00000536274 A0A1B0GUL7 405 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 SKAP2O75563 359 aaPredicted RBP4.41□□□□□ -1.7
MCF2-210ENST00000536274 PHF14O94880 888 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 NUCB2P80303 420 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 ATP2B2Q01814 1243 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 PSME1Q06323 249 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 ZNF513Q8N8E2 541 aaPredicted RBP4.41□□□□□ -1.7
MCF2-210ENST00000536274 CACTINQ8WUQ7 758 aaKnown RBP4.41□□□□□ -1.7
MCF2-210ENST00000536274 TSR2Q969E8 191 aaKnown RBP4.41□□□□□ -1.7
MCF2-210ENST00000536274 PAX7P23759 505 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 HSP90AB3PQ58FF7 597 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 C16orf71Q8IYS4 520 aaPredicted RBP4.41□□□□□ -1.7
MCF2-210ENST00000536274 MFRPQ9BY79 579 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 COL18A1P39060 1754 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 EIF3CLB5ME19 914 aaKnown RBP4.41□□□□□ -1.7
MCF2-210ENST00000536274 ZNF853P0CG23 659 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 MAP2K2P36507 400 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 MAP9Q49MG5 647 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms