RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 KDM4AO75164 1064 aa16.57■□□□□ 0.24
LIG1-203ENST00000536218 STAP2Q9UGK3 403 aa16.57■□□□□ 0.24
LIG1-203ENST00000536218 WDR17Q8IZU2 1322 aa16.57■□□□□ 0.24
LIG1-203ENST00000536218 CLASRPQ8N2M8 674 aaKnown RBP16.57■□□□□ 0.24
LIG1-203ENST00000536218 ZNF330Q9Y3S2 320 aaPredicted RBP16.57■□□□□ 0.24
LIG1-203ENST00000536218 CCDC112Q8NEF3 446 aa16.56■□□□□ 0.24
LIG1-203ENST00000536218 KAZALD1Q96I82 304 aa16.56■□□□□ 0.24
LIG1-203ENST00000536218 OVOS2A0A0G2JMS6 1433 aa16.56■□□□□ 0.24
LIG1-203ENST00000536218 HSP90AB4PQ58FF6 505 aa16.56■□□□□ 0.24
LIG1-203ENST00000536218 IL25Q9H293 177 aa16.56■□□□□ 0.24
LIG1-203ENST00000536218 SOS2Q07890 1332 aaPredicted RBP16.55■□□□□ 0.24
LIG1-203ENST00000536218 TULP2O00295 520 aa16.55■□□□□ 0.24
LIG1-203ENST00000536218 TMX1Q9H3N1 280 aa16.55■□□□□ 0.24
LIG1-203ENST00000536218 NPHP1O15259 732 aa16.55■□□□□ 0.24
LIG1-203ENST00000536218 USP48Q86UV5 1035 aa16.55■□□□□ 0.24
LIG1-203ENST00000536218 NEURL1BA8MQ27 555 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 IFIT2P09913 472 aaKnown RBP16.54■□□□□ 0.24
LIG1-203ENST00000536218 TNNT1P13805 278 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 NEK4P51957 841 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 CCDC8Q9H0W5 538 aaPredicted RBP16.54■□□□□ 0.24
LIG1-203ENST00000536218 CPDO75976 1380 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 PTGS1P23219 599 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 HNRNPH2P55795 449 aaKnown RBP16.54■□□□□ 0.24
LIG1-203ENST00000536218 G3BP1Q13283 466 aaKnown RBP eCLIP16.54■□□□□ 0.244e-6■■■■□ 21.1
LIG1-203ENST00000536218 AACSQ86V21 672 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 PI4K2BQ8TCG2 481 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 PALD1Q9ULE6 856 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.54■□□□□ 0.24
LIG1-203ENST00000536218 GOLGA6L6A8MZA4 724 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 IL2RBP14784 551 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 EPHA10Q5JZY3 1008 aa16.54■□□□□ 0.24
LIG1-203ENST00000536218 LMTK3Q96Q04 1460 aa16.53■□□□□ 0.24
LIG1-203ENST00000536218 A1BGP04217 495 aa16.53■□□□□ 0.24
LIG1-203ENST00000536218 GCKRQ14397 625 aa16.53■□□□□ 0.24
LIG1-203ENST00000536218 UBE3BQ7Z3V4 1068 aa16.53■□□□□ 0.24
LIG1-203ENST00000536218 DRC7Q8IY82 874 aa16.53■□□□□ 0.24
LIG1-203ENST00000536218 KLHL34Q8N239 644 aa16.53■□□□□ 0.24
LIG1-203ENST00000536218 METTL22Q9BUU2 404 aaPredicted RBP16.53■□□□□ 0.24
LIG1-203ENST00000536218 FEZ2Q9UHY8 353 aaPredicted RBP16.53■□□□□ 0.24
LIG1-203ENST00000536218 CWC27Q6UX04 472 aaKnown RBP16.53■□□□□ 0.24
LIG1-203ENST00000536218 HDAC5Q9UQL6 1122 aa16.53■□□□□ 0.24
LIG1-203ENST00000536218 CAMTA1Q9Y6Y1 1673 aa16.52■□□□□ 0.24
LIG1-203ENST00000536218 SMTNL1A8MU46 457 aa16.52■□□□□ 0.24
LIG1-203ENST00000536218 TMX3Q96JJ7 454 aa16.52■□□□□ 0.24
LIG1-203ENST00000536218 COL18A1P39060 1754 aa16.52■□□□□ 0.24
LIG1-203ENST00000536218 MTX1Q13505 466 aa16.52■□□□□ 0.23
LIG1-203ENST00000536218 CCDC183Q5T5S1 534 aa16.52■□□□□ 0.23
LIG1-203ENST00000536218 UPF3BQ9BZI7 483 aaKnown RBP16.52■□□□□ 0.23
LIG1-203ENST00000536218 TSPYL1Q9H0U9 437 aa16.52■□□□□ 0.23
LIG1-203ENST00000536218 PCDH11XQ9BZA7 1347 aa16.52■□□□□ 0.23
LIG1-203ENST00000536218 PCDH11YQ9BZA8 1340 aa16.52■□□□□ 0.23
LIG1-203ENST00000536218 AP5Z1O43299 807 aa16.51■□□□□ 0.23
LIG1-203ENST00000536218 BRD1O95696 1058 aa16.51■□□□□ 0.23
LIG1-203ENST00000536218 GIMAP6Q6P9H5 292 aa16.51■□□□□ 0.23
LIG1-203ENST00000536218 CHMP3Q9Y3E7 222 aa16.51■□□□□ 0.23
LIG1-203ENST00000536218 A0A087WZG4 1122 aa16.51■□□□□ 0.23
LIG1-203ENST00000536218 LRMPQ12912 555 aa16.51■□□□□ 0.23
LIG1-203ENST00000536218 KMT5BQ4FZB7 885 aa16.51■□□□□ 0.23
LIG1-203ENST00000536218 CNTROBQ8N137 903 aa16.51■□□□□ 0.23
LIG1-203ENST00000536218 CCDC9Q9Y3X0 531 aaKnown RBP16.51■□□□□ 0.23
LIG1-203ENST00000536218 SASH1O94885 1247 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 MCCP23508 829 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 NOL10Q9BSC4 688 aaKnown RBP16.5■□□□□ 0.23
LIG1-203ENST00000536218 BTG4Q9NY30 223 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 RSPH14Q9UHP6 348 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 TTLL7Q6ZT98 887 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 ZBTB3Q9H5J0 574 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 NBPF26B4DH59 902 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 TPD52L1Q16890 204 aaPredicted RBP16.5■□□□□ 0.23
LIG1-203ENST00000536218 NBPF14Q5TI25 921 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 NBPF10Q6P3W6 841 aaKnown RBP16.5■□□□□ 0.23
LIG1-203ENST00000536218 NBPF15Q8N660 670 aa16.5■□□□□ 0.23
LIG1-203ENST00000536218 KAT6BQ8WYB5 2073 aa16.49■□□□□ 0.23
LIG1-203ENST00000536218 TPM3P06753 285 aa16.49■□□□□ 0.23
LIG1-203ENST00000536218 RAD51AP2Q09MP3 1159 aa16.49■□□□□ 0.23
LIG1-203ENST00000536218 LRP10Q7Z4F1 713 aa16.49■□□□□ 0.23
LIG1-203ENST00000536218 EAF2Q96CJ1 260 aaPredicted RBP16.49■□□□□ 0.23
LIG1-203ENST00000536218 CARD10Q9BWT7 1032 aa16.49■□□□□ 0.23
LIG1-203ENST00000536218 ZNF397Q8NF99 534 aaPredicted RBP16.49■□□□□ 0.23
LIG1-203ENST00000536218 ECHDC1Q9NTX5 307 aa16.49■□□□□ 0.23
LIG1-203ENST00000536218 TLR7Q9NYK1 1049 aaKnown RBP16.49■□□□□ 0.23
LIG1-203ENST00000536218 A0A0G2JS52 829 aa16.48■□□□□ 0.23
LIG1-203ENST00000536218 GLRX3O76003 335 aaKnown RBP16.48■□□□□ 0.23
LIG1-203ENST00000536218 GTF3C6Q969F1 213 aa16.48■□□□□ 0.23
LIG1-203ENST00000536218 CCDC186Q7Z3E2 898 aa16.48■□□□□ 0.23
LIG1-203ENST00000536218 ERC1Q8IUD2 1116 aa16.48■□□□□ 0.23
LIG1-203ENST00000536218 AOX1Q06278 1338 aa16.48■□□□□ 0.23
LIG1-203ENST00000536218 XIRP1Q702N8 1843 aaKnown RBP16.48■□□□□ 0.23
LIG1-203ENST00000536218 BOLA2Q9H3K6 86 aa16.48■□□□□ 0.23
LIG1-203ENST00000536218 SYCP1Q15431 976 aa16.47■□□□□ 0.23
LIG1-203ENST00000536218 GPATCH3Q96I76 525 aa16.47■□□□□ 0.23
LIG1-203ENST00000536218 SCN11AQ9UI33 1791 aa16.47■□□□□ 0.23
LIG1-203ENST00000536218 COL5A2P05997 1499 aaPredicted RBP16.47■□□□□ 0.23
LIG1-203ENST00000536218 STRCQ7RTU9 1775 aa16.47■□□□□ 0.23
LIG1-203ENST00000536218 LARP6Q9BRS8 491 aaKnown RBP16.46■□□□□ 0.23
LIG1-203ENST00000536218 ZNF215Q9UL58 517 aaPredicted RBP16.46■□□□□ 0.23
LIG1-203ENST00000536218 CNPY2Q9Y2B0 182 aa16.46■□□□□ 0.23
LIG1-203ENST00000536218 SIPA1L3O60292 1781 aaPredicted RBP16.46■□□□□ 0.23
LIG1-203ENST00000536218 UTYO14607 1347 aa16.46■□□□□ 0.23
LIG1-203ENST00000536218 ERVV-2B6SEH9 535 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms