RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 USP17L22D6RA61 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L17D6RBQ6 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L19D6RCP7 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L20D6RJB6 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 ARSDP51689 593 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L24Q0WX57 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 PERM1Q5SV97 790 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 FBXO11Q86XK2 927 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 FNBP4Q8N3X1 1017 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-232ENST00000535081 TRPM4Q8TD43 1214 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 ZBTB42B2RXF5 422 aa10.13□□□□□ -0.79
SYNE1-232ENST00000535081 DGKZQ13574 1117 aa10.13□□□□□ -0.79
SYNE1-232ENST00000535081 KANK4Q5T7N3 995 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-232ENST00000535081 ELMSAN1Q6PJG2 1045 aa10.13□□□□□ -0.79
SYNE1-232ENST00000535081 WFDC8Q8IUA0 241 aa10.13□□□□□ -0.79
SYNE1-232ENST00000535081 ANKMY2Q8IV38 441 aa10.13□□□□□ -0.79
SYNE1-232ENST00000535081 FAM196BA6NMK8 535 aa10.12□□□□□ -0.79
SYNE1-232ENST00000535081 RARAP10276 462 aa10.12□□□□□ -0.79
SYNE1-232ENST00000535081 TARSP26639 723 aaKnown RBP10.12□□□□□ -0.79
SYNE1-232ENST00000535081 GPLD1P80108 840 aa10.12□□□□□ -0.79
SYNE1-232ENST00000535081 MLLT1Q03111 559 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-232ENST00000535081 PLAURQ03405 335 aa10.12□□□□□ -0.79
SYNE1-232ENST00000535081 WFDC12Q8WWY7 111 aa10.12□□□□□ -0.79
SYNE1-232ENST00000535081 IFT43Q96FT9 208 aa10.12□□□□□ -0.79
SYNE1-232ENST00000535081 PPP1R12CQ9BZL4 782 aa10.12□□□□□ -0.79
SYNE1-232ENST00000535081 QTRT2Q9H974 415 aaKnown RBP10.12□□□□□ -0.79
SYNE1-232ENST00000535081 C11orf16Q9NQ32 467 aa10.12□□□□□ -0.79
SYNE1-232ENST00000535081 TTC9Q92623 222 aa10.11□□□□□ -0.79
SYNE1-232ENST00000535081 FOXO3O43524 673 aa10.1□□□□□ -0.79
SYNE1-232ENST00000535081 HYAL3O43820 417 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-232ENST00000535081 IREB2P48200 963 aaKnown RBP10.1□□□□□ -0.79
SYNE1-232ENST00000535081 SASH3O75995 380 aa10.09□□□□□ -0.79
SYNE1-232ENST00000535081 MICAL2O94851 1124 aa10.09□□□□□ -0.79
SYNE1-232ENST00000535081 NOS3P29474 1203 aa10.09□□□□□ -0.79
SYNE1-232ENST00000535081 IGF2-ASQ6U949 168 aa10.09□□□□□ -0.79
SYNE1-232ENST00000535081 CALR3Q96L12 384 aaKnown RBP10.09□□□□□ -0.79
SYNE1-232ENST00000535081 SMG9Q9H0W8 520 aaKnown RBP10.09□□□□□ -0.79
SYNE1-232ENST00000535081 ARID4AP29374 1257 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-232ENST00000535081 VTI1AQ96AJ9 217 aa10.08□□□□□ -0.8
SYNE1-232ENST00000535081 MYO19Q96H55 970 aa10.08□□□□□ -0.8
SYNE1-232ENST00000535081 VRTNQ9H8Y1 702 aa10.08□□□□□ -0.8
SYNE1-232ENST00000535081 DEAF1O75398 565 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-232ENST00000535081 WEE1P30291 646 aa10.07□□□□□ -0.8
SYNE1-232ENST00000535081 NRLP54845 237 aa10.07□□□□□ -0.8
SYNE1-232ENST00000535081 C11orf91Q3C1V1 193 aa10.07□□□□□ -0.8
SYNE1-232ENST00000535081 MEGF10Q96KG7 1140 aa10.07□□□□□ -0.8
SYNE1-232ENST00000535081 ARXQ96QS3 562 aa10.07□□□□□ -0.8
SYNE1-232ENST00000535081 EIF2AK2P19525 551 aaKnown RBP10.06□□□□□ -0.8
SYNE1-232ENST00000535081 HFE2Q6ZVN8 426 aa10.06□□□□□ -0.8
SYNE1-232ENST00000535081 LMOD1P29536 600 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-232ENST00000535081 RTCBQ9Y3I0 505 aaKnown RBP10.05□□□□□ -0.8
SYNE1-232ENST00000535081 EGFRP00533 1210 aa10.04□□□□□ -0.8
SYNE1-232ENST00000535081 TLR7Q9NYK1 1049 aaKnown RBP10.04□□□□□ -0.8
SYNE1-232ENST00000535081 RNF112Q9ULX5 631 aa10.04□□□□□ -0.8
SYNE1-232ENST00000535081 USP20Q9Y2K6 914 aa10.04□□□□□ -0.8
SYNE1-232ENST00000535081 DLL1O00548 723 aa10.03□□□□□ -0.8
SYNE1-232ENST00000535081 OPLAHO14841 1288 aa10.03□□□□□ -0.8
SYNE1-232ENST00000535081 PRR23CQ6ZRP0 262 aa10.03□□□□□ -0.8
SYNE1-232ENST00000535081 XYLBO75191 536 aa10.02□□□□□ -0.81
SYNE1-232ENST00000535081 PLD4Q96BZ4 506 aa10.02□□□□□ -0.81
SYNE1-232ENST00000535081 LRFN2Q9ULH4 789 aa10.02□□□□□ -0.81
SYNE1-232ENST00000535081 TREML1Q86YW5 311 aa10.01□□□□□ -0.81
SYNE1-232ENST00000535081 RGL4Q8IZJ4 473 aa10.01□□□□□ -0.81
SYNE1-232ENST00000535081 AKTIPQ9H8T0 292 aa10.01□□□□□ -0.81
SYNE1-232ENST00000535081 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.01□□□□□ -0.81
SYNE1-232ENST00000535081 PSAPP07602 524 aa10□□□□□ -0.81
SYNE1-232ENST00000535081 KRTAP1-3Q8IUG1 177 aa10□□□□□ -0.81
SYNE1-232ENST00000535081 DZIP1LQ8IYY4 767 aaKnown RBP10□□□□□ -0.81
SYNE1-232ENST00000535081 CMTR1Q8N1G2 835 aaKnown RBP10□□□□□ -0.81
SYNE1-232ENST00000535081 LOC102724428A0A0B4J2F2 783 aa9.99□□□□□ -0.81
SYNE1-232ENST00000535081 J3QW42 95 aa9.99□□□□□ -0.81
SYNE1-232ENST00000535081 GHRHP01286 108 aa9.99□□□□□ -0.81
SYNE1-232ENST00000535081 SIK1P57059 783 aa9.99□□□□□ -0.81
SYNE1-232ENST00000535081 GDF6Q6KF10 455 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-232ENST00000535081 FAM200AQ8TCP9 573 aa9.99□□□□□ -0.81
SYNE1-232ENST00000535081 NSUN5Q96P11 429 aaKnown RBP9.99□□□□□ -0.81
SYNE1-232ENST00000535081 KRTAP4-12Q9BQ66 201 aa9.99□□□□□ -0.81
SYNE1-232ENST00000535081 MRPL18Q9H0U6 180 aaKnown RBP9.99□□□□□ -0.81
SYNE1-232ENST00000535081 MMP20O60882 483 aa9.98□□□□□ -0.81
SYNE1-232ENST00000535081 SOX18P35713 384 aa9.98□□□□□ -0.81
SYNE1-232ENST00000535081 SRA1Q9HD15 236 aaKnown RBP9.98□□□□□ -0.81
SYNE1-232ENST00000535081 KCNMB2Q9Y691 235 aa9.98□□□□□ -0.81
SYNE1-232ENST00000535081 A6NJR5 290 aa9.97□□□□□ -0.81
SYNE1-232ENST00000535081 F8W735 103 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-232ENST00000535081 ALX3O95076 343 aa9.97□□□□□ -0.81
SYNE1-232ENST00000535081 HOXD8P13378 290 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-232ENST00000535081 TMEM130Q8N3G9 435 aa9.97□□□□□ -0.81
SYNE1-232ENST00000535081 IL22RA1Q8N6P7 574 aa9.97□□□□□ -0.81
SYNE1-232ENST00000535081 RBSNQ9H1K0 784 aa9.97□□□□□ -0.81
SYNE1-232ENST00000535081 FKBP5Q13451 457 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-232ENST00000535081 CFAP70Q5T0N1 1121 aa9.96□□□□□ -0.82
SYNE1-232ENST00000535081 DCAF11Q8TEB1 546 aa9.96□□□□□ -0.82
SYNE1-232ENST00000535081 FSTP19883 344 aa9.95□□□□□ -0.82
SYNE1-232ENST00000535081 COX20Q5RI15 118 aa9.95□□□□□ -0.82
SYNE1-232ENST00000535081 MAP4K3Q8IVH8 894 aa9.95□□□□□ -0.82
SYNE1-232ENST00000535081 SETDB1Q15047 1291 aa9.94□□□□□ -0.82
SYNE1-232ENST00000535081 LCE3BQ5TA77 95 aa9.94□□□□□ -0.82
SYNE1-232ENST00000535081 Q6ZS46 218 aa9.94□□□□□ -0.82
SYNE1-232ENST00000535081 SLC51AQ86UW1 340 aa9.93□□□□□ -0.82
SYNE1-232ENST00000535081 PCMTD2Q9NV79 361 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms