RNA–Protein interactions for RNA: ENST00000534446.1

LONRF1-209, Transcript of LON peptidase N-terminal domain and ring finger 1, human

TSL 3

Gene LONRF1, Length 679 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LONRF1-209	ENST00000534446	CELF1	Q92879	486 aa	Known RBP	12.54	□□□□□ -0.4
LONRF1-209	ENST00000534446	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.54	□□□□□ -0.4
LONRF1-209	ENST00000534446	PPEF1	O14829	653 aa	Predicted RBP	12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	CSF1R	P07333	972 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	NBPF7	P0C2Y1	421 aa	Predicted RBP	12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	CCT4	P50991	539 aa	Known RBP	12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	RASSF7	Q02833	373 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	CCDC152	Q4G0S7	254 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	EPHA10	Q5JZY3	1008 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	SOGA3	Q5TF21	947 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	INTS3	Q68E01	1043 aa	Known RBP	12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	FRAT1	Q92837	279 aa	Predicted RBP	12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	KAZALD1	Q96I82	304 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	USP44	Q9H0E7	712 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	SEC31B	Q9NQW1	1179 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	DDX60	Q8IY21	1712 aa	Known RBP	12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	RTL9	Q8NET4	1388 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	SLX4	Q8IY92	1834 aa		12.53	□□□□□ -0.4
LONRF1-209	ENST00000534446	BBOX1	O75936	387 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	PRELP	P51888	382 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	FOXO4	P98177	505 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	CCDC93	Q567U6	631 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	ZKSCAN2	Q63HK3	967 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	CC2D2B	Q6DHV5	1058 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	SUCLG2	Q96I99	432 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	GREM2	Q9H772	168 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	C9orf78	Q9NZ63	289 aa	Predicted RBP	12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	RCAN3	Q9UKA8	241 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	ATP6V0A2	Q9Y487	856 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	LTBP3	Q9NS15	1303 aa		12.52	□□□□□ -0.41
LONRF1-209	ENST00000534446	COL4A1	P02462	1669 aa		12.51	□□□□□ -0.41
LONRF1-209	ENST00000534446	ARFGEF1	Q9Y6D6	1849 aa		12.51	□□□□□ -0.41
LONRF1-209	ENST00000534446	LAMB2	P55268	1798 aa		12.51	□□□□□ -0.41
LONRF1-209	ENST00000534446	RPS8	P62241	208 aa	Known RBP	12.5	□□□□□ -0.41
LONRF1-209	ENST00000534446	FAM161A	Q3B820	660 aa		12.5	□□□□□ -0.41
LONRF1-209	ENST00000534446	RABL6	Q3YEC7	729 aa	Predicted RBP	12.5	□□□□□ -0.41
LONRF1-209	ENST00000534446	TMC4	Q7Z404	712 aa		12.5	□□□□□ -0.41
LONRF1-209	ENST00000534446	SP8	Q8IXZ3	490 aa		12.5	□□□□□ -0.41
LONRF1-209	ENST00000534446	RTKN2	Q8IZC4	609 aa		12.5	□□□□□ -0.41
LONRF1-209	ENST00000534446	CLUAP1	Q96AJ1	413 aa		12.5	□□□□□ -0.41
LONRF1-209	ENST00000534446	TAOK3	Q9H2K8	898 aa		12.5	□□□□□ -0.41
LONRF1-209	ENST00000534446	RLBP1	P12271	317 aa		12.49	□□□□□ -0.41
LONRF1-209	ENST00000534446	FKBP4	Q02790	459 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
LONRF1-209	ENST00000534446	C9orf131	Q5VYM1	1079 aa		12.49	□□□□□ -0.41
LONRF1-209	ENST00000534446	LMBR1L	Q6UX01	489 aa		12.49	□□□□□ -0.41
LONRF1-209	ENST00000534446	TMEM57	Q8N5G2	664 aa		12.49	□□□□□ -0.41
LONRF1-209	ENST00000534446	ANKRD44	Q8N8A2	993 aa		12.49	□□□□□ -0.41
LONRF1-209	ENST00000534446	PSMD1	Q99460	953 aa		12.49	□□□□□ -0.41
LONRF1-209	ENST00000534446	ITGA6	P23229	1130 aa		12.48	□□□□□ -0.41
LONRF1-209	ENST00000534446	GRIPAP1	Q4V328	841 aa		12.48	□□□□□ -0.41
LONRF1-209	ENST00000534446	ANKRD18A	Q8IVF6	992 aa		12.48	□□□□□ -0.41
LONRF1-209	ENST00000534446	DZIP1L	Q8IYY4	767 aa	Known RBP	12.48	□□□□□ -0.41
LONRF1-209	ENST00000534446	CDC5L	Q99459	802 aa	Known RBP	12.48	□□□□□ -0.41
LONRF1-209	ENST00000534446	MEIS3	Q99687	375 aa		12.48	□□□□□ -0.41
LONRF1-209	ENST00000534446	RTFDC1	Q9BY42	306 aa	Predicted RBP	12.48	□□□□□ -0.41
LONRF1-209	ENST00000534446	BICC1	Q9H694	974 aa	Known RBP	12.48	□□□□□ -0.41
LONRF1-209	ENST00000534446	LMNB1	P20700	586 aa		12.47	□□□□□ -0.41
LONRF1-209	ENST00000534446	YY1	P25490	414 aa		12.47	□□□□□ -0.41
LONRF1-209	ENST00000534446	BSDC1	Q9NW68	430 aa	Predicted RBP	12.47	□□□□□ -0.41
LONRF1-209	ENST00000534446	ANKRD18B	A2A2Z9	1011 aa		12.46	□□□□□ -0.41
LONRF1-209	ENST00000534446	UBTFL1	P0CB47	393 aa	Predicted RBP	12.46	□□□□□ -0.41
LONRF1-209	ENST00000534446	IFIT5	Q13325	482 aa	Known RBP	12.46	□□□□□ -0.41
LONRF1-209	ENST00000534446	MPND	Q8N594	471 aa		12.46	□□□□□ -0.41
LONRF1-209	ENST00000534446	ZNF277	Q9NRM2	450 aa	Predicted RBP	12.46	□□□□□ -0.41
LONRF1-209	ENST00000534446	RNF181	Q9P0P0	153 aa		12.46	□□□□□ -0.41
LONRF1-209	ENST00000534446	PLIN1	O60240	522 aa		12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	IGHMBP2	P38935	993 aa	Known RBP	12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	GPSM2	P81274	684 aa		12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	DPP8	Q6V1X1	898 aa	Predicted RBP	12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	FTSJ3	Q8IY81	847 aa	Known RBP	12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	PANK1	Q8TE04	598 aa		12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	TMX4	Q9H1E5	349 aa	Predicted RBP	12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	PODXL2	Q9NZ53	605 aa		12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	MINPP1	Q9UNW1	487 aa		12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	CHMP3	Q9Y3E7	222 aa		12.45	□□□□□ -0.42
LONRF1-209	ENST00000534446	FER1L6	Q2WGJ9	1857 aa		12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	DUOX1	Q9NRD9	1551 aa		12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	ZBTB7B	O15156	539 aa	Predicted RBP	12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	GNAI3	P08754	354 aa		12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	IARS	P41252	1262 aa	Known RBP	12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	RFX5	P48382	616 aa	Predicted RBP	12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	CCDC57	Q2TAC2	916 aa		12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	POLL	Q9UGP5	575 aa		12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	LRRFIP2	Q9Y608	721 aa	Known RBP	12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	LRRC37A	A6NMS7	1700 aa		12.44	□□□□□ -0.42
LONRF1-209	ENST00000534446	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.43	□□□□□ -0.42
LONRF1-209	ENST00000534446	TBC1D16	Q8TBP0	767 aa		12.43	□□□□□ -0.42
LONRF1-209	ENST00000534446	ZNF594	Q96JF6	807 aa	Predicted RBP	12.43	□□□□□ -0.42
LONRF1-209	ENST00000534446	VPS33B	Q9H267	617 aa		12.43	□□□□□ -0.42
LONRF1-209	ENST00000534446	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.43	□□□□□ -0.42
LONRF1-209	ENST00000534446	TAF1	P21675	1872 aa		12.42	□□□□□ -0.42
LONRF1-209	ENST00000534446	COL4A5	P29400	1685 aa		12.42	□□□□□ -0.42
LONRF1-209	ENST00000534446	MS4A1	P11836	297 aa		12.42	□□□□□ -0.42
LONRF1-209	ENST00000534446	KIAA2012	Q0VF49	1180 aa		12.42	□□□□□ -0.42
LONRF1-209	ENST00000534446	MTX1	Q13505	466 aa		12.42	□□□□□ -0.42
LONRF1-209	ENST00000534446	C20orf194	Q5TEA3	1177 aa		12.42	□□□□□ -0.42
LONRF1-209	ENST00000534446	ITPRIP	Q8IWB1	547 aa		12.42	□□□□□ -0.42
LONRF1-209	ENST00000534446	SUPT20H	Q8NEM7	779 aa		12.42	□□□□□ -0.42
LONRF1-209	ENST00000534446	MPHOSPH8	Q99549	860 aa		12.42	□□□□□ -0.42

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