RNA–Protein interactions for RNA: ENST00000534356.1

CASP4-213, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 771 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-213ENST00000534356 XKR5Q6UX68 686 aa11.35□□□□□ -0.59
CASP4-213ENST00000534356 ZNF438Q7Z4V0 828 aa11.35□□□□□ -0.59
CASP4-213ENST00000534356 SYT9Q86SS6 491 aa11.35□□□□□ -0.59
CASP4-213ENST00000534356 ASB16Q96NS5 453 aa11.35□□□□□ -0.59
CASP4-213ENST00000534356 ELP3Q9H9T3 547 aa11.35□□□□□ -0.59
CASP4-213ENST00000534356 TMEM63CQ9P1W3 806 aa11.35□□□□□ -0.59
CASP4-213ENST00000534356 NSFL1CQ9UNZ2 370 aaKnown RBP11.35□□□□□ -0.59
CASP4-213ENST00000534356 GPR182O15218 404 aa11.34□□□□□ -0.59
CASP4-213ENST00000534356 RARAP10276 462 aa11.34□□□□□ -0.59
CASP4-213ENST00000534356 PCBP4P57723 403 aaKnown RBP11.34□□□□□ -0.59
CASP4-213ENST00000534356 DNAJC14Q6Y2X3 702 aaPredicted RBP11.34□□□□□ -0.59
CASP4-213ENST00000534356 EFCC1Q9HA90 598 aa11.34□□□□□ -0.59
CASP4-213ENST00000534356 KLF15Q9UIH9 416 aa11.34□□□□□ -0.59
CASP4-213ENST00000534356 ADAMTS2O95450 1211 aa11.33□□□□□ -0.6
CASP4-213ENST00000534356 ZSCAN29Q8IWY8 852 aaPredicted RBP11.33□□□□□ -0.6
CASP4-213ENST00000534356 MMP20O60882 483 aa11.32□□□□□ -0.6
CASP4-213ENST00000534356 ARAFP10398 606 aa11.32□□□□□ -0.6
CASP4-213ENST00000534356 NEUROD1Q13562 356 aa11.32□□□□□ -0.6
CASP4-213ENST00000534356 DMRTB1Q96MA1 342 aa11.32□□□□□ -0.6
CASP4-213ENST00000534356 NIF3L1Q9GZT8 377 aa11.31□□□□□ -0.6
CASP4-213ENST00000534356 AVENQ9NQS1 362 aaPredicted RBP11.31□□□□□ -0.6
CASP4-213ENST00000534356 ANKRD33BA6NCL7 494 aa11.3□□□□□ -0.6
CASP4-213ENST00000534356 TNFRSF21O75509 655 aa11.3□□□□□ -0.6
CASP4-213ENST00000534356 MAP3K6O95382 1288 aa11.3□□□□□ -0.6
CASP4-213ENST00000534356 ACDQ96AP0 544 aa11.3□□□□□ -0.6
CASP4-213ENST00000534356 OXCT2Q9BYC2 517 aaPredicted RBP11.3□□□□□ -0.6
CASP4-213ENST00000534356 ABI2Q9NYB9 513 aaPredicted RBP11.3□□□□□ -0.6
CASP4-213ENST00000534356 CNTN3Q9P232 1028 aa11.3□□□□□ -0.6
CASP4-213ENST00000534356 FOXD3Q9UJU5 478 aaPredicted RBP11.3□□□□□ -0.6
CASP4-213ENST00000534356 GGA1Q9UJY5 639 aa11.3□□□□□ -0.6
CASP4-213ENST00000534356 NEURL1BA8MQ27 555 aa11.29□□□□□ -0.6
CASP4-213ENST00000534356 TREHO43280 583 aa11.29□□□□□ -0.6
CASP4-213ENST00000534356 SIN3BO75182 1162 aa11.29□□□□□ -0.6
CASP4-213ENST00000534356 ADH6P28332 368 aa11.29□□□□□ -0.6
CASP4-213ENST00000534356 DSC3Q14574 896 aa11.29□□□□□ -0.6
CASP4-213ENST00000534356 TTC39BQ5VTQ0 682 aaPredicted RBP11.29□□□□□ -0.6
CASP4-213ENST00000534356 TLR7Q9NYK1 1049 aaKnown RBP11.29□□□□□ -0.6
CASP4-213ENST00000534356 SLURP2P0DP57 97 aa11.28□□□□□ -0.6
CASP4-213ENST00000534356 DHX32Q7L7V1 743 aaKnown RBP11.28□□□□□ -0.6
CASP4-213ENST00000534356 FCHSD1Q86WN1 690 aa11.28□□□□□ -0.6
CASP4-213ENST00000534356 C1orf127Q8N9H9 656 aa11.28□□□□□ -0.6
CASP4-213ENST00000534356 ALKBH8Q96BT7 664 aaKnown RBP11.28□□□□□ -0.6
CASP4-213ENST00000534356 IGFLR1Q9H665 355 aa11.28□□□□□ -0.6
CASP4-213ENST00000534356 CYP2E1P05181 493 aaPredicted RBP11.27□□□□□ -0.61
CASP4-213ENST00000534356 ORC1Q13415 861 aa11.27□□□□□ -0.61
CASP4-213ENST00000534356 CHRDQ9H2X0 955 aa11.27□□□□□ -0.61
CASP4-213ENST00000534356 PLCB3Q01970 1234 aa11.26□□□□□ -0.61
CASP4-213ENST00000534356 TBC1D8BQ0IIM8 1120 aa11.26□□□□□ -0.61
CASP4-213ENST00000534356 C1orf229Q6ZS94 237 aaPredicted RBP11.26□□□□□ -0.61
CASP4-213ENST00000534356 GOLGA6L1Q8N7Z2 621 aa11.26□□□□□ -0.61
CASP4-213ENST00000534356 OR13H1Q8NG92 308 aa11.26□□□□□ -0.61
CASP4-213ENST00000534356 SNX29Q8TEQ0 813 aa11.26□□□□□ -0.61
CASP4-213ENST00000534356 TNFRSF25Q93038 417 aa11.26□□□□□ -0.61
CASP4-213ENST00000534356 UBE2OQ9C0C9 1292 aaKnown RBP11.26□□□□□ -0.61
CASP4-213ENST00000534356 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.26□□□□□ -0.61
CASP4-213ENST00000534356 ZBTB42B2RXF5 422 aa11.25□□□□□ -0.61
CASP4-213ENST00000534356 PHACTR2O75167 634 aa11.25□□□□□ -0.61
CASP4-213ENST00000534356 PSAPP07602 524 aa11.25□□□□□ -0.61
CASP4-213ENST00000534356 NPAS4Q8IUM7 802 aa11.25□□□□□ -0.61
CASP4-213ENST00000534356 GDF2Q9UK05 429 aaPredicted RBP11.25□□□□□ -0.61
CASP4-213ENST00000534356 CCDC9Q9Y3X0 531 aaKnown RBP11.25□□□□□ -0.61
CASP4-213ENST00000534356 LYPD4Q6UWN0 246 aa11.24□□□□□ -0.61
CASP4-213ENST00000534356 SLCO4C1Q6ZQN7 724 aa11.24□□□□□ -0.61
CASP4-213ENST00000534356 MDFIQ99750 246 aa11.24□□□□□ -0.61
CASP4-213ENST00000534356 ZFYVE28Q9HCC9 887 aa11.24□□□□□ -0.61
CASP4-213ENST00000534356 DNAJB12Q9NXW2 375 aaKnown RBP11.24□□□□□ -0.61
CASP4-213ENST00000534356 ADARB2-AS1A8MUL3 147 aa11.23□□□□□ -0.61
CASP4-213ENST00000534356 CES1P23141 567 aa11.23□□□□□ -0.61
CASP4-213ENST00000534356 SOX18P35713 384 aa11.23□□□□□ -0.61
CASP4-213ENST00000534356 MLLT1Q03111 559 aaPredicted RBP11.23□□□□□ -0.61
CASP4-213ENST00000534356 PLAURQ03405 335 aa11.23□□□□□ -0.61
CASP4-213ENST00000534356 FMR1Q06787 632 aaKnown RBP eCLIP11.23□□□□□ -0.61
CASP4-213ENST00000534356 COL13A1Q5TAT6 717 aaPredicted RBP11.23□□□□□ -0.61
CASP4-213ENST00000534356 TRPM4Q8TD43 1214 aa11.23□□□□□ -0.61
CASP4-213ENST00000534356 WHAMMQ8TF30 809 aa11.23□□□□□ -0.61
CASP4-213ENST00000534356 NSUN5Q96P11 429 aaKnown RBP11.23□□□□□ -0.61
CASP4-213ENST00000534356 KANSL3Q9P2N6 904 aa11.23□□□□□ -0.61
CASP4-213ENST00000534356 EIF1AYO14602 144 aaKnown RBP11.22□□□□□ -0.61
CASP4-213ENST00000534356 EREGO14944 169 aa11.22□□□□□ -0.61
CASP4-213ENST00000534356 NEFLP07196 543 aa11.22□□□□□ -0.61
CASP4-213ENST00000534356 P4HBP07237 508 aaKnown RBP11.22□□□□□ -0.61
CASP4-213ENST00000534356 ADH7P40394 386 aa11.22□□□□□ -0.61
CASP4-213ENST00000534356 NRLP54845 237 aa11.22□□□□□ -0.61
CASP4-213ENST00000534356 GPLD1P80108 840 aa11.22□□□□□ -0.61
CASP4-213ENST00000534356 USPL1Q5W0Q7 1092 aa11.22□□□□□ -0.61
CASP4-213ENST00000534356 PHF20L1A8MW92 1017 aa11.21□□□□□ -0.61
CASP4-213ENST00000534356 WIPF1O43516 503 aa11.21□□□□□ -0.61
CASP4-213ENST00000534356 CELA2BP08218 269 aaPredicted RBP11.21□□□□□ -0.61
CASP4-213ENST00000534356 HOXD8P13378 290 aaPredicted RBP11.21□□□□□ -0.61
CASP4-213ENST00000534356 ERCC3P19447 782 aa11.21□□□□□ -0.61
CASP4-213ENST00000534356 MAPK8P45983 427 aa11.21□□□□□ -0.61
CASP4-213ENST00000534356 HFE2Q6ZVN8 426 aa11.21□□□□□ -0.61
CASP4-213ENST00000534356 CSRNP1Q96S65 589 aa11.21□□□□□ -0.61
CASP4-213ENST00000534356 ELOA3CA0A087WX78 387 aaPredicted RBP11.2□□□□□ -0.62
CASP4-213ENST00000534356 ELOA3DA6NLF2 546 aaPredicted RBP11.2□□□□□ -0.62
CASP4-213ENST00000534356 J3QW42 95 aa11.2□□□□□ -0.62
CASP4-213ENST00000534356 OIP5O43482 229 aa11.2□□□□□ -0.62
CASP4-213ENST00000534356 CPNE3O75131 537 aaKnown RBP11.2□□□□□ -0.62
CASP4-213ENST00000534356 POLR3DP05423 398 aaPredicted RBP11.2□□□□□ -0.62
CASP4-213ENST00000534356 BCRP11274 1271 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms