RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 UTYO14607 1347 aa15.16■□□□□ 0.02
SSBP3-214ENST00000533209 NBPF7P0C2Y1 421 aaPredicted RBP15.15■□□□□ 0.02
SSBP3-214ENST00000533209 CCT4P50991 539 aaKnown RBP15.15■□□□□ 0.02
SSBP3-214ENST00000533209 GRAPQ13588 217 aa15.15■□□□□ 0.02
SSBP3-214ENST00000533209 CCDC152Q4G0S7 254 aa15.15■□□□□ 0.02
SSBP3-214ENST00000533209 ZKSCAN2Q63HK3 967 aa15.15■□□□□ 0.02
SSBP3-214ENST00000533209 INTS3Q68E01 1043 aaKnown RBP15.15■□□□□ 0.02
SSBP3-214ENST00000533209 OLFM4Q6UX06 510 aa15.15■□□□□ 0.02
SSBP3-214ENST00000533209 SLC51AQ86UW1 340 aa15.15■□□□□ 0.02
SSBP3-214ENST00000533209 GRAPLQ8TC17 118 aaPredicted RBP15.15■□□□□ 0.02
SSBP3-214ENST00000533209 USP44Q9H0E7 712 aa15.15■□□□□ 0.02
SSBP3-214ENST00000533209 RCAN3Q9UKA8 241 aa15.15■□□□□ 0.02
SSBP3-214ENST00000533209 NFKBIEO00221 500 aa15.14■□□□□ 0.01
SSBP3-214ENST00000533209 PPEF1O14829 653 aaPredicted RBP15.14■□□□□ 0.01
SSBP3-214ENST00000533209 BBOX1O75936 387 aa15.14■□□□□ 0.01
SSBP3-214ENST00000533209 FOXO4P98177 505 aa15.14■□□□□ 0.01
SSBP3-214ENST00000533209 EPHA10Q5JZY3 1008 aa15.14■□□□□ 0.01
SSBP3-214ENST00000533209 CELF1Q92879 486 aaKnown RBP15.14■□□□□ 0.01
SSBP3-214ENST00000533209 CCDC85AQ96PX6 553 aaPredicted RBP15.14■□□□□ 0.01
SSBP3-214ENST00000533209 SEC31BQ9NQW1 1179 aa15.14■□□□□ 0.01
SSBP3-214ENST00000533209 COL4A1P02462 1669 aa15.13■□□□□ 0.01
SSBP3-214ENST00000533209 CSF1RP07333 972 aa15.13■□□□□ 0.01
SSBP3-214ENST00000533209 RASSF7Q02833 373 aa15.13■□□□□ 0.01
SSBP3-214ENST00000533209 CCDC93Q567U6 631 aa15.13■□□□□ 0.01
SSBP3-214ENST00000533209 SOGA3Q5TF21 947 aa15.13■□□□□ 0.01
SSBP3-214ENST00000533209 CLUAP1Q96AJ1 413 aa15.13■□□□□ 0.01
SSBP3-214ENST00000533209 SUCLG2Q96I99 432 aa15.13■□□□□ 0.01
SSBP3-214ENST00000533209 GREM2Q9H772 168 aa15.13■□□□□ 0.01
SSBP3-214ENST00000533209 RTL9Q8NET4 1388 aa15.12■□□□□ 0.01
SSBP3-214ENST00000533209 SNED1Q8TER0 1413 aa15.12■□□□□ 0.01
SSBP3-214ENST00000533209 KAZALD1Q96I82 304 aa15.12■□□□□ 0.01
SSBP3-214ENST00000533209 ATP6V0A2Q9Y487 856 aa15.12■□□□□ 0.01
SSBP3-214ENST00000533209 PRELPP51888 382 aa15.11■□□□□ 0.01
SSBP3-214ENST00000533209 RPS8P62241 208 aaKnown RBP15.11■□□□□ 0.01
SSBP3-214ENST00000533209 CC2D2BQ6DHV5 1058 aa15.11■□□□□ 0.01
SSBP3-214ENST00000533209 SP8Q8IXZ3 490 aa15.11■□□□□ 0.01
SSBP3-214ENST00000533209 RTKN2Q8IZC4 609 aa15.11■□□□□ 0.01
SSBP3-214ENST00000533209 LTBP3Q9NS15 1303 aa15.11■□□□□ 0.01
SSBP3-214ENST00000533209 CACNA1SQ13698 1873 aa15.1■□□□□ 0.01
SSBP3-214ENST00000533209 RLBP1P12271 317 aa15.1■□□□□ 0.01
SSBP3-214ENST00000533209 FAM161AQ3B820 660 aa15.1■□□□□ 0.01
SSBP3-214ENST00000533209 LMBR1LQ6UX01 489 aa15.1■□□□□ 0.01
SSBP3-214ENST00000533209 TMC4Q7Z404 712 aa15.1■□□□□ 0.01
SSBP3-214ENST00000533209 DZIP1LQ8IYY4 767 aaKnown RBP15.1■□□□□ 0.01
SSBP3-214ENST00000533209 TMEM57Q8N5G2 664 aa15.1■□□□□ 0.01
SSBP3-214ENST00000533209 ITGA6P23229 1130 aa15.09■□□□□ 0.01
SSBP3-214ENST00000533209 FKBP4Q02790 459 aaKnown RBP eCLIP15.09■□□□□ 0.01
SSBP3-214ENST00000533209 ANKRD18AQ8IVF6 992 aa15.09■□□□□ 0.01
SSBP3-214ENST00000533209 ANKRD44Q8N8A2 993 aa15.09■□□□□ 0.01
SSBP3-214ENST00000533209 CDC5LQ99459 802 aaKnown RBP15.09■□□□□ 0.01
SSBP3-214ENST00000533209 MEIS3Q99687 375 aa15.09■□□□□ 0.01
SSBP3-214ENST00000533209 TAOK3Q9H2K8 898 aa15.09■□□□□ 0.01
SSBP3-214ENST00000533209 BICC1Q9H694 974 aaKnown RBP15.09■□□□□ 0.01
SSBP3-214ENST00000533209 TAF1P21675 1872 aa15.08■□□□□ 0.01
SSBP3-214ENST00000533209 UBTFL1P0CB47 393 aaPredicted RBP15.08■□□□□ 0
SSBP3-214ENST00000533209 LMNB1P20700 586 aa15.08■□□□□ 0
SSBP3-214ENST00000533209 RABL6Q3YEC7 729 aaPredicted RBP15.08■□□□□ 0
SSBP3-214ENST00000533209 GRIPAP1Q4V328 841 aa15.08■□□□□ 0
SSBP3-214ENST00000533209 C9orf131Q5VYM1 1079 aa15.08■□□□□ 0
SSBP3-214ENST00000533209 PSMD1Q99460 953 aa15.08■□□□□ 0
SSBP3-214ENST00000533209 PLIN1O60240 522 aa15.07■□□□□ 0
SSBP3-214ENST00000533209 YY1P25490 414 aa15.07■□□□□ 0
SSBP3-214ENST00000533209 FTSJ3Q8IY81 847 aaKnown RBP15.07■□□□□ 0
SSBP3-214ENST00000533209 RNF181Q9P0P0 153 aa15.07■□□□□ 0
SSBP3-214ENST00000533209 CHMP3Q9Y3E7 222 aa15.07■□□□□ 0
SSBP3-214ENST00000533209 FER1L6Q2WGJ9 1857 aa15.07■□□□□ 0
SSBP3-214ENST00000533209 MYH3P11055 1940 aa15.06■□□□□ 0
SSBP3-214ENST00000533209 ANKRD18BA2A2Z9 1011 aa15.06■□□□□ 0
SSBP3-214ENST00000533209 IFIT5Q13325 482 aaKnown RBP15.06■□□□□ 0
SSBP3-214ENST00000533209 MPNDQ8N594 471 aa15.06■□□□□ 0
SSBP3-214ENST00000533209 PANK1Q8TE04 598 aa15.06■□□□□ 0
SSBP3-214ENST00000533209 RTFDC1Q9BY42 306 aaPredicted RBP15.06■□□□□ 0
SSBP3-214ENST00000533209 TMX4Q9H1E5 349 aaPredicted RBP15.06■□□□□ 0
SSBP3-214ENST00000533209 ZNF277Q9NRM2 450 aaPredicted RBP15.06■□□□□ 0
SSBP3-214ENST00000533209 BSDC1Q9NW68 430 aaPredicted RBP15.06■□□□□ 0
SSBP3-214ENST00000533209 CHD4Q14839 1912 aa15.05■□□□□ 0
SSBP3-214ENST00000533209 GNAI3P08754 354 aa15.05■□□□□ -0
SSBP3-214ENST00000533209 GPSM2P81274 684 aa15.05■□□□□ -0
SSBP3-214ENST00000533209 DPP8Q6V1X1 898 aaPredicted RBP15.05■□□□□ -0
SSBP3-214ENST00000533209 LRRFIP2Q9Y608 721 aaKnown RBP15.05■□□□□ -0
SSBP3-214ENST00000533209 LRRC37AA6NMS7 1700 aa15.05■□□□□ -0
SSBP3-214ENST00000533209 MS4A1P11836 297 aa15.04■□□□□ -0
SSBP3-214ENST00000533209 IGHMBP2P38935 993 aaKnown RBP15.04■□□□□ -0
SSBP3-214ENST00000533209 CCDC57Q2TAC2 916 aa15.04■□□□□ -0
SSBP3-214ENST00000533209 ITPRIPQ8IWB1 547 aa15.04■□□□□ -0
SSBP3-214ENST00000533209 ZNF594Q96JF6 807 aaPredicted RBP15.04■□□□□ -0
SSBP3-214ENST00000533209 PODXL2Q9NZ53 605 aa15.04■□□□□ -0
SSBP3-214ENST00000533209 NSFL1CQ9UNZ2 370 aaKnown RBP15.04■□□□□ -0
SSBP3-214ENST00000533209 HDAC5Q9UQL6 1122 aa15.04■□□□□ -0
SSBP3-214ENST00000533209 IARSP41252 1262 aaKnown RBP15.03■□□□□ -0
SSBP3-214ENST00000533209 MINPP1Q9UNW1 487 aa15.03■□□□□ -0
SSBP3-214ENST00000533209 DUOX1Q9NRD9 1551 aa15.02■□□□□ -0
SSBP3-214ENST00000533209 SBF1O95248 1867 aa15.02■□□□□ -0
SSBP3-214ENST00000533209 ZBTB7BO15156 539 aaPredicted RBP15.02■□□□□ -0
SSBP3-214ENST00000533209 C20orf194Q5TEA3 1177 aa15.02■□□□□ -0
SSBP3-214ENST00000533209 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.02■□□□□ -0
SSBP3-214ENST00000533209 SUPT20HQ8NEM7 779 aa15.02■□□□□ -0
SSBP3-214ENST00000533209 MPHOSPH8Q99549 860 aa15.02■□□□□ -0
SSBP3-214ENST00000533209 POLLQ9UGP5 575 aa15.02■□□□□ -0
SSBP3-214ENST00000533209 XDHP47989 1333 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms