RNA–Protein interactions for RNA: ENST00000531303.5

SMPD1-205, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,451 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-205ENST00000531303 SSH3Q8TE77 659 aa23.71■■□□□ 1.39
SMPD1-205ENST00000531303 NLRP3Q96P20 1036 aa23.71■■□□□ 1.39
SMPD1-205ENST00000531303 CSF1RP07333 972 aa23.7■■□□□ 1.38
SMPD1-205ENST00000531303 POLA2Q14181 598 aa23.7■■□□□ 1.38
SMPD1-205ENST00000531303 KLHDC4Q8TBB5 520 aa23.7■■□□□ 1.38
SMPD1-205ENST00000531303 MTFR1LQ9H019 292 aa23.7■■□□□ 1.38
SMPD1-205ENST00000531303 GREM2Q9H772 168 aa23.7■■□□□ 1.38
SMPD1-205ENST00000531303 PA2G4Q9UQ80 394 aaKnown RBP23.69■■□□□ 1.38
SMPD1-205ENST00000531303 NRXN2Q9P2S2 1712 aa23.69■■□□□ 1.38
SMPD1-205ENST00000531303 TNRC6CQ9HCJ0 1690 aaKnown RBP23.69■■□□□ 1.38
SMPD1-205ENST00000531303 CCDC57Q2TAC2 916 aa23.68■■□□□ 1.38
SMPD1-205ENST00000531303 CCDC152Q4G0S7 254 aa23.68■■□□□ 1.38
SMPD1-205ENST00000531303 APBB1O00213 710 aa23.68■■□□□ 1.38
SMPD1-205ENST00000531303 IFIT5Q13325 482 aaKnown RBP23.68■■□□□ 1.38
SMPD1-205ENST00000531303 ZNF594Q96JF6 807 aaPredicted RBP23.68■■□□□ 1.38
SMPD1-205ENST00000531303 SURF6O75683 361 aaKnown RBP23.67■■□□□ 1.38
SMPD1-205ENST00000531303 ITGA6P23229 1130 aa23.67■■□□□ 1.38
SMPD1-205ENST00000531303 TAF7LQ5H9L4 462 aa23.67■■□□□ 1.38
SMPD1-205ENST00000531303 BCL11AQ9H165 835 aa23.67■■□□□ 1.38
SMPD1-205ENST00000531303 SIL1Q9H173 461 aa23.67■■□□□ 1.38
SMPD1-205ENST00000531303 EXOC6BQ9Y2D4 811 aa23.67■■□□□ 1.38
SMPD1-205ENST00000531303 ANKRD18BA2A2Z9 1011 aa23.66■■□□□ 1.38
SMPD1-205ENST00000531303 TAF1P21675 1872 aa23.66■■□□□ 1.38
SMPD1-205ENST00000531303 POLD1P28340 1107 aa23.66■■□□□ 1.38
SMPD1-205ENST00000531303 RFX5P48382 616 aaPredicted RBP23.66■■□□□ 1.38
SMPD1-205ENST00000531303 SF3B3Q15393 1217 aaKnown RBP23.66■■□□□ 1.38
SMPD1-205ENST00000531303 CENPQQ7L2Z9 268 aaPredicted RBP23.66■■□□□ 1.38
SMPD1-205ENST00000531303 ANKRD31Q8N7Z5 1873 aa23.66■■□□□ 1.38
SMPD1-205ENST00000531303 SEC31BQ9NQW1 1179 aa23.66■■□□□ 1.38
SMPD1-205ENST00000531303 KDM2BQ8NHM5 1336 aa23.66■■□□□ 1.38
SMPD1-205ENST00000531303 DCTPP1Q9H773 170 aa23.65■■□□□ 1.38
SMPD1-205ENST00000531303 OS9Q13438 667 aaPredicted RBP23.64■■□□□ 1.38
SMPD1-205ENST00000531303 BRIP1Q9BX63 1249 aa23.64■■□□□ 1.38
SMPD1-205ENST00000531303 SOCS7O14512 581 aa23.63■■□□□ 1.37
SMPD1-205ENST00000531303 PTPN12Q05209 780 aaKnown RBP23.63■■□□□ 1.37
SMPD1-205ENST00000531303 RPGRQ92834 1020 aaKnown RBP23.62■■□□□ 1.37
SMPD1-205ENST00000531303 G3BP1Q13283 466 aaKnown RBP eCLIP23.62■■□□□ 1.37
SMPD1-205ENST00000531303 GCC1Q96CN9 775 aa23.62■■□□□ 1.37
SMPD1-205ENST00000531303 COPRSQ9NQ92 184 aa23.62■■□□□ 1.37
SMPD1-205ENST00000531303 RIC1Q4ADV7 1423 aa23.61■■□□□ 1.37
SMPD1-205ENST00000531303 PDE6BP35913 854 aa23.61■■□□□ 1.37
SMPD1-205ENST00000531303 DDX46Q7L014 1031 aaKnown RBP23.61■■□□□ 1.37
SMPD1-205ENST00000531303 SMC5Q8IY18 1101 aa23.61■■□□□ 1.37
SMPD1-205ENST00000531303 SPEF2Q9C093 1822 aa23.61■■□□□ 1.37
SMPD1-205ENST00000531303 ANKRD45Q5TZF3 282 aa23.6■■□□□ 1.37
SMPD1-205ENST00000531303 PUS3Q9BZE2 481 aaKnown RBP23.6■■□□□ 1.37
SMPD1-205ENST00000531303 NOP58Q9Y2X3 529 aaKnown RBP23.6■■□□□ 1.37
SMPD1-205ENST00000531303 RTL9Q8NET4 1388 aa23.6■■□□□ 1.37
SMPD1-205ENST00000531303 LRRC24Q50LG9 513 aa23.59■■□□□ 1.37
SMPD1-205ENST00000531303 COL4A1P02462 1669 aa23.58■■□□□ 1.37
SMPD1-205ENST00000531303 SMARCA5O60264 1052 aaPredicted RBP23.58■■□□□ 1.37
SMPD1-205ENST00000531303 CRY2Q49AN0 593 aa23.58■■□□□ 1.37
SMPD1-205ENST00000531303 HSP90AB4PQ58FF6 505 aa23.58■■□□□ 1.37
SMPD1-205ENST00000531303 C2CD5Q86YS7 1000 aa23.58■■□□□ 1.37
SMPD1-205ENST00000531303 CELF1Q92879 486 aaKnown RBP23.58■■□□□ 1.37
SMPD1-205ENST00000531303 CDC5LQ99459 802 aaKnown RBP23.58■■□□□ 1.37
SMPD1-205ENST00000531303 EYA2O00167 538 aa23.57■■□□□ 1.36
SMPD1-205ENST00000531303 IGHMBP2P38935 993 aaKnown RBP23.57■■□□□ 1.36
SMPD1-205ENST00000531303 LDHAL6AQ6ZMR3 332 aa23.57■■□□□ 1.36
SMPD1-205ENST00000531303 ANKRD18AQ8IVF6 992 aa23.57■■□□□ 1.36
SMPD1-205ENST00000531303 KLHL34Q8N239 644 aa23.57■■□□□ 1.36
SMPD1-205ENST00000531303 RBM17Q96I25 401 aaKnown RBP23.57■■□□□ 1.36
SMPD1-205ENST00000531303 MPHOSPH8Q99549 860 aa23.57■■□□□ 1.36
SMPD1-205ENST00000531303 CNNM1Q9NRU3 951 aa23.57■■□□□ 1.36
SMPD1-205ENST00000531303 PPP1R1BQ9UD71 204 aaPredicted RBP23.57■■□□□ 1.36
SMPD1-205ENST00000531303 PDZRN3Q9UPQ7 1066 aa23.57■■□□□ 1.36
SMPD1-205ENST00000531303 KLRG2A4D1S0 409 aaPredicted RBP23.56■■□□□ 1.36
SMPD1-205ENST00000531303 PTGER2P43116 358 aa23.56■■□□□ 1.36
SMPD1-205ENST00000531303 SGIP1Q9BQI5 828 aa23.56■■□□□ 1.36
SMPD1-205ENST00000531303 SPON1Q9HCB6 807 aa23.56■■□□□ 1.36
SMPD1-205ENST00000531303 ZBTB47Q9UFB7 747 aaPredicted RBP23.56■■□□□ 1.36
SMPD1-205ENST00000531303 COL11A2P13942 1736 aaPredicted RBP23.56■■□□□ 1.36
SMPD1-205ENST00000531303 RAB11FIP3O75154 756 aa23.56■■□□□ 1.36
SMPD1-205ENST00000531303 CHRNA5P30532 468 aa23.56■■□□□ 1.36
SMPD1-205ENST00000531303 SKAP1Q86WV1 359 aa23.56■■□□□ 1.36
SMPD1-205ENST00000531303 ZNF622Q969S3 477 aaKnown RBP eCLIP23.56■■□□□ 1.36
SMPD1-205ENST00000531303 C10orf71Q711Q0 1435 aa23.55■■□□□ 1.36
SMPD1-205ENST00000531303 H0YIN7 160 aa23.55■■□□□ 1.36
SMPD1-205ENST00000531303 SRGNP10124 158 aa23.55■■□□□ 1.36
SMPD1-205ENST00000531303 RPS8P62241 208 aaKnown RBP23.55■■□□□ 1.36
SMPD1-205ENST00000531303 ATG9AQ7Z3C6 839 aa23.55■■□□□ 1.36
SMPD1-205ENST00000531303 LRRCC1Q9C099 1032 aa23.55■■□□□ 1.36
SMPD1-205ENST00000531303 LNPKQ9C0E8 428 aa23.55■■□□□ 1.36
SMPD1-205ENST00000531303 IL1RAPL2Q9NP60 686 aa23.55■■□□□ 1.36
SMPD1-205ENST00000531303 NPR1P16066 1061 aa23.54■■□□□ 1.36
SMPD1-205ENST00000531303 NUCB1Q02818 461 aa23.54■■□□□ 1.36
SMPD1-205ENST00000531303 GRAPQ13588 217 aa23.54■■□□□ 1.36
SMPD1-205ENST00000531303 GRAPLQ8TC17 118 aaPredicted RBP23.54■■□□□ 1.36
SMPD1-205ENST00000531303 RHPN1Q8TCX5 695 aa23.54■■□□□ 1.36
SMPD1-205ENST00000531303 CIAO1O76071 339 aa23.53■■□□□ 1.36
SMPD1-205ENST00000531303 SASH1O94885 1247 aa23.53■■□□□ 1.36
SMPD1-205ENST00000531303 IL15P40933 162 aaPredicted RBP23.53■■□□□ 1.36
SMPD1-205ENST00000531303 TFCP2Q12800 502 aa23.53■■□□□ 1.36
SMPD1-205ENST00000531303 ERC1Q8IUD2 1116 aa23.53■■□□□ 1.36
SMPD1-205ENST00000531303 KIF1BPQ96EK5 621 aa23.53■■□□□ 1.36
SMPD1-205ENST00000531303 HOXA10P31260 410 aaPredicted RBP23.52■■□□□ 1.36
SMPD1-205ENST00000531303 CHD1LQ86WJ1 897 aa23.52■■□□□ 1.36
SMPD1-205ENST00000531303 MASTLQ96GX5 879 aa23.52■■□□□ 1.36
SMPD1-205ENST00000531303 RIPOR2Q9Y4F9 1068 aa23.52■■□□□ 1.36
SMPD1-205ENST00000531303 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms