RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 GPRC5DQ9NZD1 345 aa11.2□□□□□ -0.62
CD44-232ENST00000531118 ZNF652Q9Y2D9 606 aa11.2□□□□□ -0.62
CD44-232ENST00000531118 HMOX1P09601 288 aa11.19□□□□□ -0.62
CD44-232ENST00000531118 ALDH1B1P30837 517 aa11.19□□□□□ -0.62
CD44-232ENST00000531118 CLEC4GQ6UXB4 293 aa11.19□□□□□ -0.62
CD44-232ENST00000531118 NIM1KQ8IY84 436 aa11.19□□□□□ -0.62
CD44-232ENST00000531118 GCC1Q96CN9 775 aa11.19□□□□□ -0.62
CD44-232ENST00000531118 NPC1L1Q9UHC9 1359 aa11.18□□□□□ -0.62
CD44-232ENST00000531118 POLR2AP24928 1970 aaKnown RBP11.18□□□□□ -0.62
CD44-232ENST00000531118 PIP4K2AP48426 406 aaPredicted RBP11.18□□□□□ -0.62
CD44-232ENST00000531118 HUNKP57058 714 aa11.18□□□□□ -0.62
CD44-232ENST00000531118 CRY2Q49AN0 593 aa11.18□□□□□ -0.62
CD44-232ENST00000531118 CC2D2BQ6DHV5 1058 aa11.18□□□□□ -0.62
CD44-232ENST00000531118 CTU1Q7Z7A3 348 aaKnown RBP11.18□□□□□ -0.62
CD44-232ENST00000531118 FMNL2Q96PY5 1086 aa11.18□□□□□ -0.62
CD44-232ENST00000531118 POLR3GLQ9BT43 218 aa11.18□□□□□ -0.62
CD44-232ENST00000531118 NIP7Q9Y221 180 aaKnown RBP eCLIP11.18□□□□□ -0.62
CD44-232ENST00000531118 LAMB2P55268 1798 aa11.18□□□□□ -0.62
CD44-232ENST00000531118 CDHR2Q9BYE9 1310 aa11.17□□□□□ -0.62
CD44-232ENST00000531118 FAM177BA6PVY3 158 aa11.17□□□□□ -0.62
CD44-232ENST00000531118 TEFQ10587 303 aa11.17□□□□□ -0.62
CD44-232ENST00000531118 TPTE2Q6XPS3 522 aa11.17□□□□□ -0.62
CD44-232ENST00000531118 MORC1Q86VD1 984 aa11.17□□□□□ -0.62
CD44-232ENST00000531118 NBPF15Q8N660 670 aa11.17□□□□□ -0.62
CD44-232ENST00000531118 TRPM4Q8TD43 1214 aa11.17□□□□□ -0.62
CD44-232ENST00000531118 SLC39A7Q92504 469 aa11.17□□□□□ -0.62
CD44-232ENST00000531118 RBBP6Q7Z6E9 1792 aaKnown RBP11.17□□□□□ -0.62
CD44-232ENST00000531118 DDX60Q8IY21 1712 aaKnown RBP11.16□□□□□ -0.62
CD44-232ENST00000531118 FAM155AB1AL88 458 aaPredicted RBP11.16□□□□□ -0.62
CD44-232ENST00000531118 PPIP5K2O43314 1243 aa11.16□□□□□ -0.62
CD44-232ENST00000531118 GMPSP49915 693 aaPredicted RBP11.16□□□□□ -0.62
CD44-232ENST00000531118 PGAP2Q9UHJ9 254 aa11.16□□□□□ -0.62
CD44-232ENST00000531118 HPS5Q9UPZ3 1129 aa11.16□□□□□ -0.62
CD44-232ENST00000531118 COL3A1P02461 1466 aaPredicted RBP11.16□□□□□ -0.62
CD44-232ENST00000531118 CEMIPQ8WUJ3 1361 aa11.16□□□□□ -0.62
CD44-232ENST00000531118 IBTKQ9P2D0 1353 aaPredicted RBP11.16□□□□□ -0.62
CD44-232ENST00000531118 PPEF1O14829 653 aaPredicted RBP11.15□□□□□ -0.62
CD44-232ENST00000531118 AOC3Q16853 763 aa11.15□□□□□ -0.62
CD44-232ENST00000531118 HABP4Q5JVS0 413 aaKnown RBP11.15□□□□□ -0.62
CD44-232ENST00000531118 RNF186Q9NXI6 227 aa11.15□□□□□ -0.62
CD44-232ENST00000531118 DUOX1Q9NRD9 1551 aa11.15□□□□□ -0.62
CD44-232ENST00000531118 LRRC37AA6NMS7 1700 aa11.15□□□□□ -0.63
CD44-232ENST00000531118 KIF7Q2M1P5 1343 aa11.14□□□□□ -0.63
CD44-232ENST00000531118 TRPA1O75762 1119 aa11.14□□□□□ -0.63
CD44-232ENST00000531118 GRIPAP1Q4V328 841 aa11.14□□□□□ -0.63
CD44-232ENST00000531118 RGMBQ6NW40 437 aa11.14□□□□□ -0.63
CD44-232ENST00000531118 CDC37L1Q7L3B6 337 aa11.14□□□□□ -0.63
CD44-232ENST00000531118 ZC3H15Q8WU90 426 aaKnown RBP11.14□□□□□ -0.63
CD44-232ENST00000531118 PRAMEF22A3QJZ6 481 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 KCNQ3O43525 872 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 SLC10A3P09131 477 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 C7P10643 843 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 HIRAP54198 1017 aaPredicted RBP11.13□□□□□ -0.63
CD44-232ENST00000531118 KIF23Q02241 960 aaPredicted RBP11.13□□□□□ -0.63
CD44-232ENST00000531118 CXCL9Q07325 125 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 NUTM1Q86Y26 1132 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 IL17REQ8NFR9 667 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 RPGRQ92834 1020 aaKnown RBP11.13□□□□□ -0.63
CD44-232ENST00000531118 MFRPQ9BY79 579 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 PANK3Q9H999 370 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 USP16Q9Y5T5 823 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 ANKRD36CQ5JPF3 1778 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 PAPPA2Q9BXP8 1791 aa11.13□□□□□ -0.63
CD44-232ENST00000531118 TRIOBPQ9H2D6 2365 aa11.12□□□□□ -0.63
CD44-232ENST00000531118 GTF2E1P29083 439 aaPredicted RBP11.12□□□□□ -0.63
CD44-232ENST00000531118 HOXA10P31260 410 aaPredicted RBP11.12□□□□□ -0.63
CD44-232ENST00000531118 GBA2Q9HCG7 927 aaPredicted RBP11.12□□□□□ -0.63
CD44-232ENST00000531118 KIAA0100Q14667 2235 aaKnown RBP11.12□□□□□ -0.63
CD44-232ENST00000531118 KDM3BQ7LBC6 1761 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 SHTN1A0MZ66 631 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 GNAT3A8MTJ3 354 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 HLFQ16534 295 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 DLK2Q6UY11 383 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 USP48Q86UV5 1035 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 SPRYD3Q8NCJ5 442 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 GAS2L2Q8NHY3 880 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 NYXQ9GZU5 481 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 ZNRF3Q9ULT6 936 aa11.11□□□□□ -0.63
CD44-232ENST00000531118 CEP290O15078 2479 aa11.1□□□□□ -0.63
CD44-232ENST00000531118 NBPF26B4DH59 902 aa11.1□□□□□ -0.63
CD44-232ENST00000531118 TCERG1O14776 1098 aaKnown RBP11.1□□□□□ -0.63
CD44-232ENST00000531118 ZNF157P51786 506 aaPredicted RBP11.1□□□□□ -0.63
CD44-232ENST00000531118 IRX5P78411 483 aaPredicted RBP11.1□□□□□ -0.63
CD44-232ENST00000531118 NBPF10Q6P3W6 841 aaKnown RBP11.1□□□□□ -0.63
CD44-232ENST00000531118 FBXO22Q8NEZ5 403 aa11.1□□□□□ -0.63
CD44-232ENST00000531118 CCDC102AQ96A19 550 aa11.1□□□□□ -0.63
CD44-232ENST00000531118 CRAMP1Q96RY5 1269 aa11.1□□□□□ -0.63
CD44-232ENST00000531118 BCL2L13Q9BXK5 485 aa11.1□□□□□ -0.63
CD44-232ENST00000531118 MKI67P46013 3256 aaKnown RBP11.1□□□□□ -0.63
CD44-232ENST00000531118 TAF1P21675 1872 aa11.09□□□□□ -0.63
CD44-232ENST00000531118 BTBD11A6QL63 1104 aa11.09□□□□□ -0.63
CD44-232ENST00000531118 ADM5C9JUS6 153 aa11.09□□□□□ -0.63
CD44-232ENST00000531118 FXR1P51114 621 aaKnown RBP eCLIP11.09□□□□□ -0.63
CD44-232ENST00000531118 PKN2Q16513 984 aaKnown RBP11.09□□□□□ -0.63
CD44-232ENST00000531118 C3orf67Q6ZVT6 689 aa11.09□□□□□ -0.63
CD44-232ENST00000531118 MICALL2Q8IY33 904 aa11.09□□□□□ -0.63
CD44-232ENST00000531118 RBM17Q96I25 401 aaKnown RBP11.09□□□□□ -0.63
CD44-232ENST00000531118 VPS33BQ9H267 617 aa11.09□□□□□ -0.63
CD44-232ENST00000531118 METRNQ9UJH8 293 aa11.09□□□□□ -0.63
CD44-232ENST00000531118 UBN2Q6ZU65 1347 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms