RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 SRGNP10124 158 aa17.66■□□□□ 0.42
USF1-209ENST00000529476 RRP1P56182 461 aaKnown RBP17.66■□□□□ 0.42
USF1-209ENST00000529476 CRY2Q49AN0 593 aa17.66■□□□□ 0.42
USF1-209ENST00000529476 C20orf194Q5TEA3 1177 aa17.66■□□□□ 0.42
USF1-209ENST00000529476 CACNA1SQ13698 1873 aa17.66■□□□□ 0.42
USF1-209ENST00000529476 UTYO14607 1347 aa17.66■□□□□ 0.42
USF1-209ENST00000529476 PDE8AO60658 829 aa17.65■□□□□ 0.42
USF1-209ENST00000529476 MS4A1P11836 297 aa17.65■□□□□ 0.42
USF1-209ENST00000529476 ITPRIPQ8IWB1 547 aa17.65■□□□□ 0.42
USF1-209ENST00000529476 NMRK2Q9NPI5 230 aa17.65■□□□□ 0.42
USF1-209ENST00000529476 PDZRN3Q9UPQ7 1066 aa17.65■□□□□ 0.42
USF1-209ENST00000529476 WDR90Q96KV7 1748 aa17.64■□□□□ 0.41
USF1-209ENST00000529476 HSP90B1P14625 803 aaKnown RBP17.64■□□□□ 0.41
USF1-209ENST00000529476 JMYQ8N9B5 988 aa17.64■□□□□ 0.41
USF1-209ENST00000529476 ZNF622Q969S3 477 aaKnown RBP eCLIP17.64■□□□□ 0.417e-6■■□□□ 12.8
USF1-209ENST00000529476 KLRG1Q96E93 195 aa17.64■□□□□ 0.41
USF1-209ENST00000529476 MASTLQ96GX5 879 aa17.64■□□□□ 0.41
USF1-209ENST00000529476 SUCLG2Q96I99 432 aa17.64■□□□□ 0.41
USF1-209ENST00000529476 MEIS3Q99687 375 aa17.64■□□□□ 0.41
USF1-209ENST00000529476 PLA2G12BQ9BX93 195 aa17.64■□□□□ 0.41
USF1-209ENST00000529476 TAF1P21675 1872 aa17.64■□□□□ 0.41
USF1-209ENST00000529476 NPR1P16066 1061 aa17.63■□□□□ 0.41
USF1-209ENST00000529476 PRELPP51888 382 aa17.63■□□□□ 0.41
USF1-209ENST00000529476 CTSWP56202 376 aa17.63■□□□□ 0.41
USF1-209ENST00000529476 SF3B3Q15393 1217 aaKnown RBP17.63■□□□□ 0.41
USF1-209ENST00000529476 EPHA10Q5JZY3 1008 aa17.63■□□□□ 0.41
USF1-209ENST00000529476 STYK1Q6J9G0 422 aa17.63■□□□□ 0.41
USF1-209ENST00000529476 RPGRQ92834 1020 aaKnown RBP17.63■□□□□ 0.41
USF1-209ENST00000529476 CCDC85AQ96PX6 553 aaPredicted RBP17.63■□□□□ 0.41
USF1-209ENST00000529476 UBTFL1P0CB47 393 aaPredicted RBP17.62■□□□□ 0.41
USF1-209ENST00000529476 FOXO4P98177 505 aa17.62■□□□□ 0.41
USF1-209ENST00000529476 PDE3AQ14432 1141 aa17.62■□□□□ 0.41
USF1-209ENST00000529476 TNS4Q8IZW8 715 aa17.62■□□□□ 0.41
USF1-209ENST00000529476 KAZALD1Q96I82 304 aa17.62■□□□□ 0.41
USF1-209ENST00000529476 PIM2Q9P1W9 311 aa17.62■□□□□ 0.41
USF1-209ENST00000529476 COG6Q9Y2V7 657 aa17.62■□□□□ 0.41
USF1-209ENST00000529476 SUPT16HQ9Y5B9 1047 aaKnown RBP17.62■□□□□ 0.41
USF1-209ENST00000529476 COL4A1P02462 1669 aa17.61■□□□□ 0.41
USF1-209ENST00000529476 SLX4Q8IY92 1834 aa17.61■□□□□ 0.41
USF1-209ENST00000529476 HOXA10P31260 410 aaPredicted RBP17.61■□□□□ 0.41
USF1-209ENST00000529476 MVPQ14764 893 aaKnown RBP17.61■□□□□ 0.41
USF1-209ENST00000529476 TTLL11Q8NHH1 800 aa17.61■□□□□ 0.41
USF1-209ENST00000529476 RBM17Q96I25 401 aaKnown RBP17.61■□□□□ 0.41
USF1-209ENST00000529476 CCDC152Q4G0S7 254 aa17.6■□□□□ 0.41
USF1-209ENST00000529476 TTLL6Q8N841 843 aa17.6■□□□□ 0.41
USF1-209ENST00000529476 CSF1RP07333 972 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 GNAI3P08754 354 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 DALRD3Q5D0E6 543 aaKnown RBP17.59■□□□□ 0.41
USF1-209ENST00000529476 LMBR1LQ6UX01 489 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 DDX46Q7L014 1031 aaKnown RBP17.59■□□□□ 0.41
USF1-209ENST00000529476 ANKRD44Q8N8A2 993 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 CNKSR1Q969H4 720 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 CRAMP1Q96RY5 1269 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 BICC1Q9H694 974 aaKnown RBP17.59■□□□□ 0.41
USF1-209ENST00000529476 GREM2Q9H772 168 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 SEC31BQ9NQW1 1179 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 BCS1LQ9Y276 419 aa17.59■□□□□ 0.41
USF1-209ENST00000529476 LRRFIP2Q9Y608 721 aaKnown RBP17.59■□□□□ 0.41
USF1-209ENST00000529476 ARFGEF1Q9Y6D6 1849 aa17.58■□□□□ 0.41
USF1-209ENST00000529476 ZBTB7BO15156 539 aaPredicted RBP17.58■□□□□ 0.4
USF1-209ENST00000529476 ALDH1B1P30837 517 aa17.58■□□□□ 0.4
USF1-209ENST00000529476 PRPF40BQ6NWY9 871 aaKnown RBP17.58■□□□□ 0.4
USF1-209ENST00000529476 RBM46Q8TBY0 533 aaKnown RBP17.58■□□□□ 0.4
USF1-209ENST00000529476 SPEF2Q9C093 1822 aa17.58■□□□□ 0.4
USF1-209ENST00000529476 GRAPQ13588 217 aa17.57■□□□□ 0.4
USF1-209ENST00000529476 FAM161AQ3B820 660 aa17.57■□□□□ 0.4
USF1-209ENST00000529476 GRAPLQ8TC17 118 aaPredicted RBP17.57■□□□□ 0.4
USF1-209ENST00000529476 CELF1Q92879 486 aaKnown RBP17.57■□□□□ 0.4
USF1-209ENST00000529476 DDX19BQ9UMR2 479 aa17.57■□□□□ 0.4
USF1-209ENST00000529476 CHMP3Q9Y3E7 222 aa17.57■□□□□ 0.4
USF1-209ENST00000529476 RTL9Q8NET4 1388 aa17.56■□□□□ 0.4
USF1-209ENST00000529476 RABL6Q3YEC7 729 aaPredicted RBP17.56■□□□□ 0.4
USF1-209ENST00000529476 ZNF219Q9P2Y4 722 aaPredicted RBP17.56■□□□□ 0.4
USF1-209ENST00000529476 HDAC5Q9UQL6 1122 aa17.56■□□□□ 0.4
USF1-209ENST00000529476 GNAI2P04899 355 aa17.55■□□□□ 0.4
USF1-209ENST00000529476 ITGA6P23229 1130 aa17.55■□□□□ 0.4
USF1-209ENST00000529476 ARHGAP27Q6ZUM4 889 aa17.55■□□□□ 0.4
USF1-209ENST00000529476 SLC51AQ86UW1 340 aa17.55■□□□□ 0.4
USF1-209ENST00000529476 C1orf115Q9H7X2 142 aa17.55■□□□□ 0.4
USF1-209ENST00000529476 PPEF1O14829 653 aaPredicted RBP17.54■□□□□ 0.4
USF1-209ENST00000529476 C21orf2O43822 256 aa17.54■□□□□ 0.4
USF1-209ENST00000529476 OLFM4Q6UX06 510 aa17.54■□□□□ 0.4
USF1-209ENST00000529476 ANKRD18BA2A2Z9 1011 aa17.53■□□□□ 0.4
USF1-209ENST00000529476 BBOX1O75936 387 aa17.53■□□□□ 0.4
USF1-209ENST00000529476 CENPBP07199 599 aaPredicted RBP17.53■□□□□ 0.4
USF1-209ENST00000529476 RPS8P62241 208 aaKnown RBP17.53■□□□□ 0.4
USF1-209ENST00000529476 IFIT5Q13325 482 aaKnown RBP17.53■□□□□ 0.4
USF1-209ENST00000529476 ANKRD18AQ8IVF6 992 aa17.53■□□□□ 0.4
USF1-209ENST00000529476 C7orf43Q8WVR3 580 aa17.53■□□□□ 0.4
USF1-209ENST00000529476 CRBNQ96SW2 442 aa17.53■□□□□ 0.4
USF1-209ENST00000529476 CDC5LQ99459 802 aaKnown RBP17.53■□□□□ 0.4
USF1-209ENST00000529476 FSTL1Q12841 308 aa17.52■□□□□ 0.4
USF1-209ENST00000529476 CCDC57Q2TAC2 916 aa17.52■□□□□ 0.4
USF1-209ENST00000529476 ZNF594Q96JF6 807 aaPredicted RBP17.52■□□□□ 0.4
USF1-209ENST00000529476 ZBTB40Q9NUA8 1239 aa17.52■□□□□ 0.4
USF1-209ENST00000529476 LRRC37AA6NMS7 1700 aa17.52■□□□□ 0.39
USF1-209ENST00000529476 C16orf71Q8IYS4 520 aaPredicted RBP17.51■□□□□ 0.39
USF1-209ENST00000529476 ATP6V0A2Q9Y487 856 aa17.51■□□□□ 0.39
USF1-209ENST00000529476 IGHMBP2P38935 993 aaKnown RBP17.5■□□□□ 0.39
USF1-209ENST00000529476 C9orf131Q5VYM1 1079 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms