RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 PDE12Q6L8Q7 609 aaKnown RBP8.47□□□□□ -1.05
CD44-230ENST00000528922 PNMA5Q96PV4 448 aa8.47□□□□□ -1.05
CD44-230ENST00000528922 FAM129BQ96TA1 746 aa8.47□□□□□ -1.05
CD44-230ENST00000528922 OXCT2Q9BYC2 517 aaPredicted RBP8.47□□□□□ -1.05
CD44-230ENST00000528922 ELP3Q9H9T3 547 aa8.47□□□□□ -1.05
CD44-230ENST00000528922 EFCC1Q9HA90 598 aa8.47□□□□□ -1.05
CD44-230ENST00000528922 AVENQ9NQS1 362 aaPredicted RBP8.47□□□□□ -1.05
CD44-230ENST00000528922 TMEM63CQ9P1W3 806 aa8.47□□□□□ -1.05
CD44-230ENST00000528922 GGA1Q9UJY5 639 aa8.47□□□□□ -1.05
CD44-230ENST00000528922 WIPF1O43516 503 aa8.46□□□□□ -1.06
CD44-230ENST00000528922 MMP20O60882 483 aa8.46□□□□□ -1.06
CD44-230ENST00000528922 MAP3K6O95382 1288 aa8.46□□□□□ -1.06
CD44-230ENST00000528922 RARAP10276 462 aa8.46□□□□□ -1.06
CD44-230ENST00000528922 C1orf229Q6ZS94 237 aaPredicted RBP8.46□□□□□ -1.06
CD44-230ENST00000528922 TMC7Q7Z402 723 aa8.46□□□□□ -1.06
CD44-230ENST00000528922 FCHSD1Q86WN1 690 aa8.46□□□□□ -1.06
CD44-230ENST00000528922 TTC16Q8NEE8 873 aa8.46□□□□□ -1.06
CD44-230ENST00000528922 SIN3BO75182 1162 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 ADH6P28332 368 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 EHHADHQ08426 723 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 NEUROD1Q13562 356 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 CCDC27Q2M243 656 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 ZNF438Q7Z4V0 828 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 TMC1Q8TDI8 760 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 WHAMMQ8TF30 809 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 CNTN3Q9P232 1028 aa8.45□□□□□ -1.06
CD44-230ENST00000528922 GPR182O15218 404 aa8.44□□□□□ -1.06
CD44-230ENST00000528922 PDE3BQ13370 1112 aa8.44□□□□□ -1.06
CD44-230ENST00000528922 TMCO4Q5TGY1 634 aa8.44□□□□□ -1.06
CD44-230ENST00000528922 LYPD4Q6UWN0 246 aa8.44□□□□□ -1.06
CD44-230ENST00000528922 MDFIQ99750 246 aa8.44□□□□□ -1.06
CD44-230ENST00000528922 TLR7Q9NYK1 1049 aaKnown RBP8.44□□□□□ -1.06
CD44-230ENST00000528922 ZBTB42B2RXF5 422 aa8.43□□□□□ -1.06
CD44-230ENST00000528922 TNFRSF21O75509 655 aa8.43□□□□□ -1.06
CD44-230ENST00000528922 LORP23490 312 aaPredicted RBP8.43□□□□□ -1.06
CD44-230ENST00000528922 DHX32Q7L7V1 743 aaKnown RBP8.43□□□□□ -1.06
CD44-230ENST00000528922 GOLGA6L1Q8N7Z2 621 aa8.43□□□□□ -1.06
CD44-230ENST00000528922 ASB16Q96NS5 453 aa8.43□□□□□ -1.06
CD44-230ENST00000528922 IGFLR1Q9H665 355 aa8.43□□□□□ -1.06
CD44-230ENST00000528922 ABI2Q9NYB9 513 aaPredicted RBP8.43□□□□□ -1.06
CD44-230ENST00000528922 FOXD3Q9UJU5 478 aaPredicted RBP8.43□□□□□ -1.06
CD44-230ENST00000528922 GDF2Q9UK05 429 aaPredicted RBP8.43□□□□□ -1.06
CD44-230ENST00000528922 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.43□□□□□ -1.06
CD44-230ENST00000528922 CYP2E1P05181 493 aaPredicted RBP8.42□□□□□ -1.06
CD44-230ENST00000528922 CELA2BP08218 269 aaPredicted RBP8.42□□□□□ -1.06
CD44-230ENST00000528922 TTC39BQ5VTQ0 682 aaPredicted RBP8.42□□□□□ -1.06
CD44-230ENST00000528922 DNAJC14Q6Y2X3 702 aaPredicted RBP8.42□□□□□ -1.06
CD44-230ENST00000528922 SLCO4C1Q6ZQN7 724 aa8.42□□□□□ -1.06
CD44-230ENST00000528922 C1orf127Q8N9H9 656 aa8.42□□□□□ -1.06
CD44-230ENST00000528922 OR13H1Q8NG92 308 aa8.42□□□□□ -1.06
CD44-230ENST00000528922 TNFRSF25Q93038 417 aa8.42□□□□□ -1.06
CD44-230ENST00000528922 NIF3L1Q9GZT8 377 aa8.42□□□□□ -1.06
CD44-230ENST00000528922 ADARB2-AS1A8MUL3 147 aa8.41□□□□□ -1.06
CD44-230ENST00000528922 DSC3Q14574 896 aa8.41□□□□□ -1.06
CD44-230ENST00000528922 ZSCAN29Q8IWY8 852 aaPredicted RBP8.41□□□□□ -1.06
CD44-230ENST00000528922 DMRTB1Q96MA1 342 aa8.41□□□□□ -1.06
CD44-230ENST00000528922 CHRDQ9H2X0 955 aa8.41□□□□□ -1.06
CD44-230ENST00000528922 DNAJB12Q9NXW2 375 aaKnown RBP8.41□□□□□ -1.06
CD44-230ENST00000528922 TREHO43280 583 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 OIP5O43482 229 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 PSAPP07602 524 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 BCRP11274 1271 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 EPXP11678 715 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 TBC1D8BQ0IIM8 1120 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 COL13A1Q5TAT6 717 aaPredicted RBP8.4□□□□□ -1.06
CD44-230ENST00000528922 ZNF385CQ66K41 422 aaPredicted RBP8.4□□□□□ -1.06
CD44-230ENST00000528922 GALNT6Q8NCL4 622 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 TRPM4Q8TD43 1214 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 EDARADDQ8WWZ3 215 aa8.4□□□□□ -1.06
CD44-230ENST00000528922 UBE2OQ9C0C9 1292 aaKnown RBP8.4□□□□□ -1.06
CD44-230ENST00000528922 ANKRD33BA6NCL7 494 aa8.39□□□□□ -1.07
CD44-230ENST00000528922 SHISA8B8ZZ34 492 aa8.39□□□□□ -1.07
CD44-230ENST00000528922 SOX18P35713 384 aa8.39□□□□□ -1.07
CD44-230ENST00000528922 ADH7P40394 386 aa8.39□□□□□ -1.07
CD44-230ENST00000528922 NRLP54845 237 aa8.39□□□□□ -1.07
CD44-230ENST00000528922 MFAP1P55081 439 aaKnown RBP8.39□□□□□ -1.07
CD44-230ENST00000528922 MLLT1Q03111 559 aaPredicted RBP8.39□□□□□ -1.07
CD44-230ENST00000528922 ORC1Q13415 861 aa8.39□□□□□ -1.07
CD44-230ENST00000528922 SNX29Q8TEQ0 813 aa8.39□□□□□ -1.07
CD44-230ENST00000528922 ALKBH8Q96BT7 664 aaKnown RBP8.39□□□□□ -1.07
CD44-230ENST00000528922 ELOA3CA0A087WX78 387 aaPredicted RBP8.38□□□□□ -1.07
CD44-230ENST00000528922 ELOA3DA6NLF2 546 aaPredicted RBP8.38□□□□□ -1.07
CD44-230ENST00000528922 PHACTR2O75167 634 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 HOXD8P13378 290 aaPredicted RBP8.38□□□□□ -1.07
CD44-230ENST00000528922 GPLD1P80108 840 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 PLCB3Q01970 1234 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 PLAURQ03405 335 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 ELOA3BQ3SY89 546 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 ELOA3Q8NG57 546 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 ZFYVE28Q9HCC9 887 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 KANSL3Q9P2N6 904 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 SLC6A14Q9UN76 642 aa8.38□□□□□ -1.07
CD44-230ENST00000528922 J3QW42 95 aa8.37□□□□□ -1.07
CD44-230ENST00000528922 EREGO14944 169 aa8.37□□□□□ -1.07
CD44-230ENST00000528922 CES1P23141 567 aa8.37□□□□□ -1.07
CD44-230ENST00000528922 USPL1Q5W0Q7 1092 aa8.37□□□□□ -1.07
CD44-230ENST00000528922 HFE2Q6ZVN8 426 aa8.37□□□□□ -1.07
CD44-230ENST00000528922 BTBD6Q96KE9 485 aa8.37□□□□□ -1.07
CD44-230ENST00000528922 NSUN5Q96P11 429 aaKnown RBP8.37□□□□□ -1.07
CD44-230ENST00000528922 LRRC4BQ9NT99 713 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms