RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CHMP3Q9Y3E7 222 aa23.21■■□□□ 1.31
VPS28-207ENST00000526977 RFX5P48382 616 aaPredicted RBP23.2■■□□□ 1.3
VPS28-207ENST00000526977 TPTE2Q6XPS3 522 aa23.2■■□□□ 1.3
VPS28-207ENST00000526977 DAXXQ9UER7 740 aaPredicted RBP23.2■■□□□ 1.3
VPS28-207ENST00000526977 G3BP1Q13283 466 aaKnown RBP eCLIP23.2■■□□□ 1.3
VPS28-207ENST00000526977 ERC1Q8IUD2 1116 aa23.2■■□□□ 1.3
VPS28-207ENST00000526977 GTF2E1P29083 439 aaPredicted RBP23.19■■□□□ 1.3
VPS28-207ENST00000526977 CTSWP56202 376 aa23.19■■□□□ 1.3
VPS28-207ENST00000526977 PTPN12Q05209 780 aaKnown RBP23.19■■□□□ 1.3
VPS28-207ENST00000526977 CCDC57Q2TAC2 916 aa23.19■■□□□ 1.3
VPS28-207ENST00000526977 DEFB132Q7Z7B7 95 aa23.19■■□□□ 1.3
VPS28-207ENST00000526977 TTLL11Q8NHH1 800 aa23.19■■□□□ 1.3
VPS28-207ENST00000526977 KIF1BPQ96EK5 621 aa23.19■■□□□ 1.3
VPS28-207ENST00000526977 STK32BQ9NY57 414 aa23.19■■□□□ 1.3
VPS28-207ENST00000526977 OS9Q13438 667 aaPredicted RBP23.18■■□□□ 1.3
VPS28-207ENST00000526977 SLC15A2Q16348 729 aa23.18■■□□□ 1.3
VPS28-207ENST00000526977 TBC1D9Q6ZT07 1266 aa23.18■■□□□ 1.3
VPS28-207ENST00000526977 NBPF5PQ86XG9 351 aaPredicted RBP23.18■■□□□ 1.3
VPS28-207ENST00000526977 COL23A1Q86Y22 540 aaPredicted RBP23.18■■□□□ 1.3
VPS28-207ENST00000526977 PA2G4Q9UQ80 394 aaKnown RBP23.18■■□□□ 1.3
VPS28-207ENST00000526977 NFIXQ14938 502 aa23.18■■□□□ 1.3
VPS28-207ENST00000526977 CARMIL3Q8ND23 1372 aa23.17■■□□□ 1.3
VPS28-207ENST00000526977 SLC10A5Q5PT55 438 aa23.17■■□□□ 1.3
VPS28-207ENST00000526977 NUTM1Q86Y26 1132 aa23.17■■□□□ 1.3
VPS28-207ENST00000526977 RHPN1Q8TCX5 695 aa23.17■■□□□ 1.3
VPS28-207ENST00000526977 HCLS1P14317 486 aaPredicted RBP23.16■■□□□ 1.3
VPS28-207ENST00000526977 IFIT5Q13325 482 aaKnown RBP23.16■■□□□ 1.3
VPS28-207ENST00000526977 NLGN1Q8N2Q7 840 aa23.16■■□□□ 1.3
VPS28-207ENST00000526977 OSBPL3Q9H4L5 887 aa23.16■■□□□ 1.3
VPS28-207ENST00000526977 TM4SF1P30408 202 aa23.16■■□□□ 1.3
VPS28-207ENST00000526977 CDC45O75419 566 aa23.15■■□□□ 1.3
VPS28-207ENST00000526977 ERFEQ4G0M1 354 aa23.15■■□□□ 1.3
VPS28-207ENST00000526977 PNPLA7Q6ZV29 1317 aa23.15■■□□□ 1.3
VPS28-207ENST00000526977 PDE1AP54750 535 aa23.15■■□□□ 1.3
VPS28-207ENST00000526977 KLHDC4Q8TBB5 520 aa23.15■■□□□ 1.3
VPS28-207ENST00000526977 FBXO3Q9UK99 471 aa23.15■■□□□ 1.3
VPS28-207ENST00000526977 ANO8Q9HCE9 1232 aaPredicted RBP23.14■■□□□ 1.29
VPS28-207ENST00000526977 CCDC152Q4G0S7 254 aa23.13■■□□□ 1.29
VPS28-207ENST00000526977 SIL1Q9H173 461 aa23.13■■□□□ 1.29
VPS28-207ENST00000526977 SALL3Q9BXA9 1300 aa23.13■■□□□ 1.29
VPS28-207ENST00000526977 ANKRD18BA2A2Z9 1011 aa23.13■■□□□ 1.29
VPS28-207ENST00000526977 SDSP20132 328 aa23.13■■□□□ 1.29
VPS28-207ENST00000526977 GREM2Q9H772 168 aa23.13■■□□□ 1.29
VPS28-207ENST00000526977 COL24A1Q17RW2 1714 aa23.12■■□□□ 1.29
VPS28-207ENST00000526977 NPHP1O15259 732 aa23.12■■□□□ 1.29
VPS28-207ENST00000526977 ITGA6P23229 1130 aa23.12■■□□□ 1.29
VPS28-207ENST00000526977 CIAO1O76071 339 aa23.11■■□□□ 1.29
VPS28-207ENST00000526977 RBM25P49756 843 aaKnown RBP23.11■■□□□ 1.29
VPS28-207ENST00000526977 TAF7LQ5H9L4 462 aa23.11■■□□□ 1.29
VPS28-207ENST00000526977 CLASRPQ8N2M8 674 aaKnown RBP23.11■■□□□ 1.29
VPS28-207ENST00000526977 CCDC85AQ96PX6 553 aaPredicted RBP23.11■■□□□ 1.29
VPS28-207ENST00000526977 SASH1O94885 1247 aa23.11■■□□□ 1.29
VPS28-207ENST00000526977 BECN1Q14457 450 aa23.11■■□□□ 1.29
VPS28-207ENST00000526977 SF3B3Q15393 1217 aaKnown RBP23.11■■□□□ 1.29
VPS28-207ENST00000526977 NLRP3Q96P20 1036 aa23.11■■□□□ 1.29
VPS28-207ENST00000526977 IL1RAPL2Q9NP60 686 aa23.11■■□□□ 1.29
VPS28-207ENST00000526977 RTL9Q8NET4 1388 aa23.1■■□□□ 1.29
VPS28-207ENST00000526977 EYA2O00167 538 aa23.1■■□□□ 1.29
VPS28-207ENST00000526977 IL15P40933 162 aaPredicted RBP23.1■■□□□ 1.29
VPS28-207ENST00000526977 CNBD1Q8NA66 436 aa23.1■■□□□ 1.29
VPS28-207ENST00000526977 MYH3P11055 1940 aa23.1■■□□□ 1.29
VPS28-207ENST00000526977 SERPINB2P05120 415 aa23.09■■□□□ 1.29
VPS28-207ENST00000526977 ZNF594Q96JF6 807 aaPredicted RBP23.09■■□□□ 1.29
VPS28-207ENST00000526977 TUBGCP6Q96RT7 1819 aa23.08■■□□□ 1.29
VPS28-207ENST00000526977 STAP2Q9UGK3 403 aa23.08■■□□□ 1.29
VPS28-207ENST00000526977 DDX60Q8IY21 1712 aaKnown RBP23.08■■□□□ 1.28
VPS28-207ENST00000526977 MX1P20591 662 aa23.08■■□□□ 1.28
VPS28-207ENST00000526977 ATG9AQ7Z3C6 839 aa23.08■■□□□ 1.28
VPS28-207ENST00000526977 LAMB2P55268 1798 aa23.07■■□□□ 1.28
VPS28-207ENST00000526977 POLRMTO00411 1230 aaKnown RBP23.07■■□□□ 1.28
VPS28-207ENST00000526977 ABCC12Q96J65 1359 aa23.07■■□□□ 1.28
VPS28-207ENST00000526977 ST5P78524 1137 aa23.06■■□□□ 1.28
VPS28-207ENST00000526977 PRR5LQ6MZQ0 368 aa23.06■■□□□ 1.28
VPS28-207ENST00000526977 LDHAL6AQ6ZMR3 332 aa23.06■■□□□ 1.28
VPS28-207ENST00000526977 TSHZ3Q63HK5 1081 aa23.06■■□□□ 1.28
VPS28-207ENST00000526977 TBC1D2Q9BYX2 928 aa23.06■■□□□ 1.28
VPS28-207ENST00000526977 DDR1Q08345 913 aa23.05■■□□□ 1.28
VPS28-207ENST00000526977 LRRC24Q50LG9 513 aa23.05■■□□□ 1.28
VPS28-207ENST00000526977 QSER1Q2KHR3 1735 aa23.05■■□□□ 1.28
VPS28-207ENST00000526977 EIF5BO60841 1220 aaKnown RBP23.04■■□□□ 1.28
VPS28-207ENST00000526977 UPF1Q92900 1129 aaKnown RBP eCLIP23.04■■□□□ 1.28
VPS28-207ENST00000526977 CDC5LQ99459 802 aaKnown RBP23.04■■□□□ 1.28
VPS28-207ENST00000526977 RIC1Q4ADV7 1423 aa23.04■■□□□ 1.28
VPS28-207ENST00000526977 IFIT2P09913 472 aaKnown RBP23.04■■□□□ 1.28
VPS28-207ENST00000526977 TFCP2Q12800 502 aa23.04■■□□□ 1.28
VPS28-207ENST00000526977 PUS3Q9BZE2 481 aaKnown RBP23.04■■□□□ 1.28
VPS28-207ENST00000526977 GPR108Q9NPR9 543 aa23.04■■□□□ 1.28
VPS28-207ENST00000526977 NBR1Q14596 966 aa23.03■■□□□ 1.28
VPS28-207ENST00000526977 CNNM1Q9NRU3 951 aa23.03■■□□□ 1.28
VPS28-207ENST00000526977 CEP126Q9P2H0 1117 aa23.03■■□□□ 1.28
VPS28-207ENST00000526977 RIPOR2Q9Y4F9 1068 aa23.03■■□□□ 1.28
VPS28-207ENST00000526977 IGHMBP2P38935 993 aaKnown RBP23.03■■□□□ 1.28
VPS28-207ENST00000526977 C3orf67Q6ZVT6 689 aa23.03■■□□□ 1.28
VPS28-207ENST00000526977 MPHOSPH8Q99549 860 aa23.03■■□□□ 1.28
VPS28-207ENST00000526977 SEC31BQ9NQW1 1179 aa23.03■■□□□ 1.28
VPS28-207ENST00000526977 PARP3Q9Y6F1 533 aa23.03■■□□□ 1.28
VPS28-207ENST00000526977 AACSQ86V21 672 aa23.02■■□□□ 1.28
VPS28-207ENST00000526977 CCDC24Q8N4L8 307 aa23.02■■□□□ 1.28
VPS28-207ENST00000526977 EAF2Q96CJ1 260 aaPredicted RBP23.02■■□□□ 1.28
VPS28-207ENST00000526977 MMP10P09238 476 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms