RNA–Protein interactions for RNA: ENST00000526877.1

SSSCA1-203, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3 BASIC

Gene SSSCA1, Length 713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-203ENST00000526877 RTKN2Q8IZC4 609 aa16.02■□□□□ 0.16
SSSCA1-203ENST00000526877 TNNQ9UQP3 1299 aa16.02■□□□□ 0.16
SSSCA1-203ENST00000526877 COG6Q9Y2V7 657 aa16.02■□□□□ 0.16
SSSCA1-203ENST00000526877 CEP350Q5VT06 3117 aa16.02■□□□□ 0.15
SSSCA1-203ENST00000526877 RLBP1P12271 317 aa16.01■□□□□ 0.15
SSSCA1-203ENST00000526877 NLRP3Q96P20 1036 aa16.01■□□□□ 0.15
SSSCA1-203ENST00000526877 ISCA1Q9BUE6 129 aa16.01■□□□□ 0.15
SSSCA1-203ENST00000526877 PHAXQ9H814 394 aaKnown RBP16.01■□□□□ 0.15
SSSCA1-203ENST00000526877 PPP4R2Q9NY27 417 aa16.01■□□□□ 0.15
SSSCA1-203ENST00000526877 LAMB2P55268 1798 aa16■□□□□ 0.15
SSSCA1-203ENST00000526877 ABCC4O15439 1325 aa16■□□□□ 0.15
SSSCA1-203ENST00000526877 WDR90Q96KV7 1748 aa16■□□□□ 0.15
SSSCA1-203ENST00000526877 DDX58O95786 925 aaKnown RBP16■□□□□ 0.15
SSSCA1-203ENST00000526877 VEGFAP15692 232 aaPredicted RBP16■□□□□ 0.15
SSSCA1-203ENST00000526877 MVPQ14764 893 aaKnown RBP16■□□□□ 0.15
SSSCA1-203ENST00000526877 DPY19L2Q6NUT2 758 aa16■□□□□ 0.15
SSSCA1-203ENST00000526877 RPGRQ92834 1020 aaKnown RBP16■□□□□ 0.15
SSSCA1-203ENST00000526877 RBM17Q96I25 401 aaKnown RBP16■□□□□ 0.15
SSSCA1-203ENST00000526877 CHMP4BQ9H444 224 aaKnown RBP16■□□□□ 0.15
SSSCA1-203ENST00000526877 HCLS1P14317 486 aaPredicted RBP15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 TRIM28Q13263 835 aaKnown RBP15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 AAMPQ13685 434 aa15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 CC2D2BQ6DHV5 1058 aa15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 SLC51AQ86UW1 340 aa15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 ITPRIPQ8IWB1 547 aa15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 TMEM57Q8N5G2 664 aa15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 PSMD1Q99460 953 aa15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 ZNF277Q9NRM2 450 aaPredicted RBP15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 TRMT112Q9UI30 125 aaKnown RBP15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 DDX19BQ9UMR2 479 aa15.99■□□□□ 0.15
SSSCA1-203ENST00000526877 SH3TC1Q8TE82 1336 aa15.98■□□□□ 0.15
SSSCA1-203ENST00000526877 DDNO94850 711 aaPredicted RBP15.98■□□□□ 0.15
SSSCA1-203ENST00000526877 FSTL1Q12841 308 aa15.98■□□□□ 0.15
SSSCA1-203ENST00000526877 C16orf71Q8IYS4 520 aaPredicted RBP15.98■□□□□ 0.15
SSSCA1-203ENST00000526877 ATP5J2-PTCD1G3V325 749 aa15.97■□□□□ 0.15
SSSCA1-203ENST00000526877 CCT4P50991 539 aaKnown RBP15.97■□□□□ 0.15
SSSCA1-203ENST00000526877 INTS3Q68E01 1043 aaKnown RBP15.97■□□□□ 0.15
SSSCA1-203ENST00000526877 SLC4A10Q6U841 1118 aa15.97■□□□□ 0.15
SSSCA1-203ENST00000526877 TAF1P21675 1872 aa15.97■□□□□ 0.15
SSSCA1-203ENST00000526877 PPEF1O14829 653 aaPredicted RBP15.96■□□□□ 0.15
SSSCA1-203ENST00000526877 IARSP41252 1262 aaKnown RBP15.96■□□□□ 0.15
SSSCA1-203ENST00000526877 KSR2Q6VAB6 950 aa15.96■□□□□ 0.15
SSSCA1-203ENST00000526877 DDX60Q8IY21 1712 aaKnown RBP15.96■□□□□ 0.15
SSSCA1-203ENST00000526877 PI4KAP2A4QPH2 592 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 F6X3S4 739 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 FZD9O00144 591 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 GRIPAP1Q4V328 841 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 PI4KAP1Q8N8J0 262 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 DNAAF4Q8WXU2 420 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 FAM89AQ96GI7 184 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 ATP6V0A2Q9Y487 856 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 COL4A5P29400 1685 aa15.95■□□□□ 0.14
SSSCA1-203ENST00000526877 BBOX1O75936 387 aa15.94■□□□□ 0.14
SSSCA1-203ENST00000526877 APLP1P51693 650 aa15.94■□□□□ 0.14
SSSCA1-203ENST00000526877 RIC3Q7Z5B4 369 aa15.94■□□□□ 0.14
SSSCA1-203ENST00000526877 DNAJC5GQ8N7S2 189 aa15.94■□□□□ 0.14
SSSCA1-203ENST00000526877 SMC1BQ8NDV3 1235 aa15.94■□□□□ 0.14
SSSCA1-203ENST00000526877 L3MBTL3Q96JM7 780 aaPredicted RBP15.94■□□□□ 0.14
SSSCA1-203ENST00000526877 MAP3K2Q9Y2U5 619 aa15.94■□□□□ 0.14
SSSCA1-203ENST00000526877 ZNF541Q9H0D2 1346 aa15.94■□□□□ 0.14
SSSCA1-203ENST00000526877 SF3B3Q15393 1217 aaKnown RBP15.93■□□□□ 0.14
SSSCA1-203ENST00000526877 SP8Q8IXZ3 490 aa15.93■□□□□ 0.14
SSSCA1-203ENST00000526877 CCDC136Q96JN2 1154 aa15.93■□□□□ 0.14
SSSCA1-203ENST00000526877 SCN4AP35499 1836 aa15.92■□□□□ 0.14
SSSCA1-203ENST00000526877 ZBTB7BO15156 539 aaPredicted RBP15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 NEXNQ0ZGT2 675 aa15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 GRAPQ13588 217 aa15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 DDX46Q7L014 1031 aaKnown RBP15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 ZBTB38Q8NAP3 1195 aaPredicted RBP15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 GRAPLQ8TC17 118 aaPredicted RBP15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 MYD88Q99836 296 aa15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 METTL22Q9BUU2 404 aaPredicted RBP15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 RTFDC1Q9BY42 306 aaPredicted RBP15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 SRCIN1Q9C0H9 1055 aa15.91■□□□□ 0.14
SSSCA1-203ENST00000526877 COL4A1P02462 1669 aa15.9■□□□□ 0.14
SSSCA1-203ENST00000526877 IRS4O14654 1257 aaPredicted RBP15.9■□□□□ 0.14
SSSCA1-203ENST00000526877 POTEIP0CG38 1075 aa15.9■□□□□ 0.14
SSSCA1-203ENST00000526877 POTEJP0CG39 1038 aa15.9■□□□□ 0.14
SSSCA1-203ENST00000526877 RTL5Q5HYW3 569 aaPredicted RBP15.9■□□□□ 0.14
SSSCA1-203ENST00000526877 CCDC191Q8NCU4 936 aa15.9■□□□□ 0.14
SSSCA1-203ENST00000526877 ALDH1L1O75891 902 aa15.89■□□□□ 0.13
SSSCA1-203ENST00000526877 HTRA3P83110 453 aa15.89■□□□□ 0.13
SSSCA1-203ENST00000526877 BEND3Q5T5X7 828 aa15.89■□□□□ 0.13
SSSCA1-203ENST00000526877 JDP2Q8WYK2 163 aa15.89■□□□□ 0.13
SSSCA1-203ENST00000526877 VPS33BQ9H267 617 aa15.89■□□□□ 0.13
SSSCA1-203ENST00000526877 TAF1DQ9H5J8 278 aaPredicted RBP15.89■□□□□ 0.13
SSSCA1-203ENST00000526877 ZBTB40Q9NUA8 1239 aa15.89■□□□□ 0.13
SSSCA1-203ENST00000526877 IQCA1LA6NCM1 817 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 PCCAP05165 728 aaPredicted RBP15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 IGKV5-2P06315 115 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 GNAI3P08754 354 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 B4GALNT3Q6L9W6 998 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 GPC2Q8N158 579 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 LARGE2Q8N3Y3 721 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 MPNDQ8N594 471 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 LINS1Q8NG48 757 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 CELF1Q92879 486 aaKnown RBP15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 LRRC37AA6NMS7 1700 aa15.88■□□□□ 0.13
SSSCA1-203ENST00000526877 AOC3Q16853 763 aa15.87■□□□□ 0.13
SSSCA1-203ENST00000526877 TMC4Q7Z404 712 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms