RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 ZNF330Q9Y3S2 320 aaPredicted RBP19.2■□□□□ 0.66
USH1C-204ENST00000526313 CICQ96RK0 1608 aaPredicted RBP19.19■□□□□ 0.66
USH1C-204ENST00000526313 PKP1Q13835 747 aa19.19■□□□□ 0.66
USH1C-204ENST00000526313 SYTL4Q96C24 671 aaPredicted RBP19.19■□□□□ 0.66
USH1C-204ENST00000526313 FAM89AQ96GI7 184 aa19.19■□□□□ 0.66
USH1C-204ENST00000526313 ZNF594Q96JF6 807 aaPredicted RBP19.19■□□□□ 0.66
USH1C-204ENST00000526313 ZNF609O15014 1411 aa19.19■□□□□ 0.66
USH1C-204ENST00000526313 KAT6BQ8WYB5 2073 aa19.19■□□□□ 0.66
USH1C-204ENST00000526313 EDC3Q96F86 508 aaKnown RBP19.18■□□□□ 0.66
USH1C-204ENST00000526313 ZSWIM6Q9HCJ5 1215 aa19.18■□□□□ 0.66
USH1C-204ENST00000526313 RBM8AQ9Y5S9 174 aaKnown RBP19.18■□□□□ 0.66
USH1C-204ENST00000526313 CCDC57Q2TAC2 916 aa19.18■□□□□ 0.66
USH1C-204ENST00000526313 PRPF40BQ6NWY9 871 aaKnown RBP19.18■□□□□ 0.66
USH1C-204ENST00000526313 NUP98P52948 1817 aa19.17■□□□□ 0.66
USH1C-204ENST00000526313 SKOR2Q2VWA4 1001 aaPredicted RBP19.17■□□□□ 0.66
USH1C-204ENST00000526313 CREB3L3Q68CJ9 461 aa19.17■□□□□ 0.66
USH1C-204ENST00000526313 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.17■□□□□ 0.66
USH1C-204ENST00000526313 PUS3Q9BZE2 481 aaKnown RBP19.17■□□□□ 0.66
USH1C-204ENST00000526313 RREB1Q92766 1687 aa19.17■□□□□ 0.66
USH1C-204ENST00000526313 EIF5P55010 431 aaKnown RBP19.16■□□□□ 0.66
USH1C-204ENST00000526313 TIMM10P62072 90 aa19.16■□□□□ 0.66
USH1C-204ENST00000526313 TSGA10IPQ3SY00 556 aa19.16■□□□□ 0.66
USH1C-204ENST00000526313 TAF5LO75529 589 aa19.16■□□□□ 0.66
USH1C-204ENST00000526313 VPS53Q5VIR6 699 aa19.16■□□□□ 0.66
USH1C-204ENST00000526313 USPL1Q5W0Q7 1092 aa19.16■□□□□ 0.66
USH1C-204ENST00000526313 INTS5Q6P9B9 1019 aaKnown RBP19.16■□□□□ 0.66
USH1C-204ENST00000526313 KBTBD3Q8NAB2 608 aa19.16■□□□□ 0.66
USH1C-204ENST00000526313 AK2P54819 239 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 ADCK5Q3MIX3 580 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 ZNF589Q86UQ0 364 aaPredicted RBP19.15■□□□□ 0.66
USH1C-204ENST00000526313 ZNF34Q8IZ26 560 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 PALLDQ8WX93 1383 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 RPAP1Q9BWH6 1393 aaPredicted RBP19.15■□□□□ 0.66
USH1C-204ENST00000526313 A0A1B0GUL7 405 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 NUTM2BA6NNL0 878 aaPredicted RBP19.15■□□□□ 0.66
USH1C-204ENST00000526313 NUTM2EB1AL46 878 aaPredicted RBP19.15■□□□□ 0.66
USH1C-204ENST00000526313 ZKSCAN1P17029 563 aaPredicted RBP19.15■□□□□ 0.66
USH1C-204ENST00000526313 RUFY3Q7L099 469 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 NUTM2AQ8IVF1 878 aaPredicted RBP19.15■□□□□ 0.66
USH1C-204ENST00000526313 TTLL11Q8NHH1 800 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 NEUROD6Q96NK8 337 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 CEP126Q9P2H0 1117 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 LIMCH1Q9UPQ0 1083 aa19.15■□□□□ 0.66
USH1C-204ENST00000526313 SLC27A2O14975 620 aa19.14■□□□□ 0.65
USH1C-204ENST00000526313 BRD1O95696 1058 aa19.14■□□□□ 0.65
USH1C-204ENST00000526313 CASTP20810 708 aaKnown RBP19.14■□□□□ 0.65
USH1C-204ENST00000526313 DZIP3Q86Y13 1208 aaKnown RBP19.14■□□□□ 0.65
USH1C-204ENST00000526313 SPEF2Q9C093 1822 aa19.14■□□□□ 0.65
USH1C-204ENST00000526313 GOLGA6L22H0YM25 854 aa19.13■□□□□ 0.65
USH1C-204ENST00000526313 GPTP24298 496 aa19.13■□□□□ 0.65
USH1C-204ENST00000526313 IFIT5Q13325 482 aaKnown RBP19.13■□□□□ 0.65
USH1C-204ENST00000526313 SYNE4Q8N205 404 aa19.13■□□□□ 0.65
USH1C-204ENST00000526313 JAKMIP1Q96N16 626 aaKnown RBP19.13■□□□□ 0.65
USH1C-204ENST00000526313 DNAJC2Q99543 621 aaKnown RBP19.13■□□□□ 0.65
USH1C-204ENST00000526313 ALDH8A1Q9H2A2 487 aaPredicted RBP19.13■□□□□ 0.65
USH1C-204ENST00000526313 CCDC87Q9NVE4 849 aa19.13■□□□□ 0.65
USH1C-204ENST00000526313 AKAP2Q9Y2D5 859 aa19.13■□□□□ 0.65
USH1C-204ENST00000526313 NDUFB9Q9Y6M9 179 aa19.13■□□□□ 0.65
USH1C-204ENST00000526313 SH3TC1Q8TE82 1336 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 FSD2A1L4K1 749 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 PIP4K2BP78356 416 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 ARXQ96QS3 562 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 PAG1Q9NWQ8 432 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 HMG20BQ9P0W2 317 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 RIPOR2Q9Y4F9 1068 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 CYP46A1Q9Y6A2 500 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 MYH3P11055 1940 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 LOC102724428A0A0B4J2F2 783 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 SIK1P57059 783 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 MCMDC2Q4G0Z9 681 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 RNF20Q5VTR2 975 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 NOL8Q76FK4 1167 aaKnown RBP19.12■□□□□ 0.65
USH1C-204ENST00000526313 TBC1D2BQ9UPU7 963 aa19.12■□□□□ 0.65
USH1C-204ENST00000526313 UBN2Q6ZU65 1347 aa19.11■□□□□ 0.65
USH1C-204ENST00000526313 IRS4O14654 1257 aaPredicted RBP19.11■□□□□ 0.65
USH1C-204ENST00000526313 CTSWP56202 376 aa19.11■□□□□ 0.65
USH1C-204ENST00000526313 DDX46Q7L014 1031 aaKnown RBP19.11■□□□□ 0.65
USH1C-204ENST00000526313 AK7Q96M32 723 aa19.11■□□□□ 0.65
USH1C-204ENST00000526313 PDRG1Q9NUG6 133 aa19.11■□□□□ 0.65
USH1C-204ENST00000526313 CPA1P15085 419 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 PSMA5P28066 241 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 ATP6V1AP38606 617 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 ACSBG1Q96GR2 724 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 HELLSQ9NRZ9 838 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 ZNF831Q5JPB2 1677 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 PDE8AO60658 829 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 CRKLP46109 303 aaKnown RBP19.1■□□□□ 0.65
USH1C-204ENST00000526313 KCNJ4P48050 445 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 ITPK1Q13572 414 aa19.1■□□□□ 0.65
USH1C-204ENST00000526313 ZSCAN31Q96LW9 406 aaPredicted RBP19.1■□□□□ 0.65
USH1C-204ENST00000526313 TRMT112Q9UI30 125 aaKnown RBP19.1■□□□□ 0.65
USH1C-204ENST00000526313 IFIT1P09914 478 aaKnown RBP19.09■□□□□ 0.65
USH1C-204ENST00000526313 GREM2Q9H772 168 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 LMBRD1Q9NUN5 540 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 BCL9LQ86UU0 1499 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 RIC1Q4ADV7 1423 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 GOLIM4O00461 696 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 ITGA6P23229 1130 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 VPS72Q15906 364 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 KLHL40Q2TBA0 621 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms