RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 GOLGA6L1Q8N7Z2 621 aa8.67□□□□□ -1.02
HDAC9-227ENST00000523867 MNS1Q8NEH6 495 aa8.67□□□□□ -1.02
HDAC9-227ENST00000523867 TSPAN18Q96SJ8 248 aa8.67□□□□□ -1.02
HDAC9-227ENST00000523867 NUTM2FA1L443 756 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 SEMA3EO15041 775 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 SCP2P22307 547 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 CHMLP26374 656 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 HSP90AB3PQ58FF7 597 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 ARHGEF1Q92888 912 aaKnown RBP8.66□□□□□ -1.02
HDAC9-227ENST00000523867 INTS4Q96HW7 963 aaKnown RBP8.66□□□□□ -1.02
HDAC9-227ENST00000523867 PALD1Q9ULE6 856 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.66□□□□□ -1.02
HDAC9-227ENST00000523867 ITSN1Q15811 1721 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 NRXN3Q9Y4C0 1643 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 TECPR2O15040 1411 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 AKAP12Q02952 1782 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 MAP3K19Q56UN5 1328 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 SALL3Q9BXA9 1300 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 UBR1Q8IWV7 1749 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 DCAF8L1A6NGE4 600 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 ERICH4A6NGS2 130 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 APLP1P51693 650 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 RNF20Q5VTR2 975 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 CHMP4CQ96CF2 233 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 NOL10Q9BSC4 688 aaKnown RBP8.66□□□□□ -1.02
HDAC9-227ENST00000523867 DONSONQ9NYP3 566 aa8.66□□□□□ -1.02
HDAC9-227ENST00000523867 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.66□□□□□ -1.02
HDAC9-227ENST00000523867 OVOS2A0A0J9YW53 1432 aa8.65□□□□□ -1.02
HDAC9-227ENST00000523867 OVOS2Q6IE36 1432 aa8.65□□□□□ -1.02
HDAC9-227ENST00000523867 PNMA6EA0A0J9YXQ4 647 aa8.65□□□□□ -1.02
HDAC9-227ENST00000523867 PIP4K2BP78356 416 aa8.65□□□□□ -1.02
HDAC9-227ENST00000523867 ATP8B2P98198 1209 aa8.65□□□□□ -1.02
HDAC9-227ENST00000523867 SRCIN1Q9C0H9 1055 aa8.65□□□□□ -1.02
HDAC9-227ENST00000523867 SERPINA10Q9UK55 444 aa8.65□□□□□ -1.02
HDAC9-227ENST00000523867 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.65□□□□□ -1.03
HDAC9-227ENST00000523867 SKIV2LQ15477 1246 aaKnown RBP8.65□□□□□ -1.03
HDAC9-227ENST00000523867 CCDC30Q5VVM6 783 aa8.65□□□□□ -1.03
HDAC9-227ENST00000523867 C17orf53Q8N3J3 647 aaPredicted RBP8.65□□□□□ -1.03
HDAC9-227ENST00000523867 OTUD6BQ8N6M0 293 aa8.65□□□□□ -1.03
HDAC9-227ENST00000523867 CWC15Q9P013 229 aaKnown RBP8.65□□□□□ -1.03
HDAC9-227ENST00000523867 USP25Q9UHP3 1055 aa8.65□□□□□ -1.03
HDAC9-227ENST00000523867 ARHGEF10O15013 1369 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 PLEKHG3A1L390 1219 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 TEX35Q5T0J7 233 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 RBM46Q8TBY0 533 aaKnown RBP8.64□□□□□ -1.03
HDAC9-227ENST00000523867 SPOCK2Q92563 424 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 ZBTB9Q96C00 473 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 UPF3BQ9BZI7 483 aaKnown RBP8.64□□□□□ -1.03
HDAC9-227ENST00000523867 TMX4Q9H1E5 349 aaPredicted RBP8.64□□□□□ -1.03
HDAC9-227ENST00000523867 IVNS1ABPQ9Y6Y0 642 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 ROBO2Q9HCK4 1378 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 BMS1Q14692 1282 aaKnown RBP8.64□□□□□ -1.03
HDAC9-227ENST00000523867 CT47A1Q5JQC4 288 aaPredicted RBP8.64□□□□□ -1.03
HDAC9-227ENST00000523867 UBA5Q9GZZ9 404 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 TTC12Q9H892 705 aaPredicted RBP8.64□□□□□ -1.03
HDAC9-227ENST00000523867 RAI14Q9P0K7 980 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 STAP2Q9UGK3 403 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 SSH2Q76I76 1423 aa8.64□□□□□ -1.03
HDAC9-227ENST00000523867 USP31Q70CQ4 1352 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 STRCP1A6NGW2 1772 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 KCNA1Q09470 495 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 ZNF513Q8N8E2 541 aaPredicted RBP8.63□□□□□ -1.03
HDAC9-227ENST00000523867 LRRFIP2Q9Y608 721 aaKnown RBP8.63□□□□□ -1.03
HDAC9-227ENST00000523867 USP6P35125 1406 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 WDR33Q9C0J8 1336 aaKnown RBP8.63□□□□□ -1.03
HDAC9-227ENST00000523867 ADCY5O95622 1261 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 NOM1Q5C9Z4 860 aaKnown RBP8.63□□□□□ -1.03
HDAC9-227ENST00000523867 DDX46Q7L014 1031 aaKnown RBP8.63□□□□□ -1.03
HDAC9-227ENST00000523867 RPAINQ86UA6 219 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 UNC5CLQ8IV45 518 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 MAF1Q9H063 256 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 MED4Q9NPJ6 270 aa8.63□□□□□ -1.03
HDAC9-227ENST00000523867 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.63□□□□□ -1.03
HDAC9-227ENST00000523867 PEAK1Q9H792 1746 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 CCDC194A0A1B0GVG4 234 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 AMPHP49418 695 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 CCDC91Q7Z6B0 441 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 GDPD2Q9HCC8 539 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 A0A1B0GUL7 405 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 PRR29P0C7W0 189 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 UBTFL1P0CB47 393 aaPredicted RBP8.62□□□□□ -1.03
HDAC9-227ENST00000523867 SWT1Q5T5J6 900 aaKnown RBP8.62□□□□□ -1.03
HDAC9-227ENST00000523867 USP48Q86UV5 1035 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 CCDC112Q8NEF3 446 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 CXorf38Q8TB03 319 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 IL17RAQ96F46 866 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 EYA1Q99502 592 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 IL1RAPL2Q9NP60 686 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 RBM28Q9NW13 759 aaKnown RBP8.62□□□□□ -1.03
HDAC9-227ENST00000523867 RGPD1P0DJD0 1748 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 FLT4P35916 1363 aa8.62□□□□□ -1.03
HDAC9-227ENST00000523867 AOX1Q06278 1338 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 MYO1CO00159 1063 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 HTATSF1O43719 755 aaKnown RBP8.61□□□□□ -1.03
HDAC9-227ENST00000523867 GADD45BO75293 160 aaPredicted RBP8.61□□□□□ -1.03
HDAC9-227ENST00000523867 HSPA4P34932 840 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 GSCP56915 257 aaPredicted RBP8.61□□□□□ -1.03
HDAC9-227ENST00000523867 METTL14Q9HCE5 456 aaKnown RBP8.61□□□□□ -1.03
HDAC9-227ENST00000523867 JRKLQ9Y4A0 524 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 EID1Q9Y6B2 187 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms