RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 PNMA6EA0A0J9YXQ4 647 aa16.26■□□□□ 0.19
CPNE3-205ENST00000522240 COL23A1Q86Y22 540 aaPredicted RBP16.26■□□□□ 0.19
CPNE3-205ENST00000522240 FAM89AQ96GI7 184 aa16.26■□□□□ 0.19
CPNE3-205ENST00000522240 SSUH2Q9Y2M2 353 aa16.26■□□□□ 0.19
CPNE3-205ENST00000522240 IRS4O14654 1257 aaPredicted RBP16.25■□□□□ 0.19
CPNE3-205ENST00000522240 SRGAP3O43295 1099 aa16.25■□□□□ 0.19
CPNE3-205ENST00000522240 FOXO4P98177 505 aa16.25■□□□□ 0.19
CPNE3-205ENST00000522240 EPHA10Q5JZY3 1008 aa16.25■□□□□ 0.19
CPNE3-205ENST00000522240 KLHL34Q8N239 644 aa16.25■□□□□ 0.19
CPNE3-205ENST00000522240 DCTPP1Q9H773 170 aa16.25■□□□□ 0.19
CPNE3-205ENST00000522240 CASZ1Q86V15 1759 aa16.25■□□□□ 0.19
CPNE3-205ENST00000522240 PDE8AO60658 829 aa16.24■□□□□ 0.19
CPNE3-205ENST00000522240 NFIXQ14938 502 aa16.24■□□□□ 0.19
CPNE3-205ENST00000522240 JARID2Q92833 1246 aaPredicted RBP16.24■□□□□ 0.19
CPNE3-205ENST00000522240 CTSWP56202 376 aa16.23■□□□□ 0.19
CPNE3-205ENST00000522240 RTL5Q5HYW3 569 aaPredicted RBP16.23■□□□□ 0.19
CPNE3-205ENST00000522240 BICDL1Q6ZP65 573 aa16.23■□□□□ 0.19
CPNE3-205ENST00000522240 NLGN1Q8N2Q7 840 aa16.23■□□□□ 0.19
CPNE3-205ENST00000522240 RTL9Q8NET4 1388 aa16.23■□□□□ 0.19
CPNE3-205ENST00000522240 ABCC12Q96J65 1359 aa16.23■□□□□ 0.19
CPNE3-205ENST00000522240 CSF1RP07333 972 aa16.22■□□□□ 0.19
CPNE3-205ENST00000522240 TM4SF1P30408 202 aa16.22■□□□□ 0.19
CPNE3-205ENST00000522240 LMBR1LQ6UX01 489 aa16.22■□□□□ 0.19
CPNE3-205ENST00000522240 NBPF5PQ86XG9 351 aaPredicted RBP16.22■□□□□ 0.19
CPNE3-205ENST00000522240 TNRC6CQ9HCJ0 1690 aaKnown RBP16.21■□□□□ 0.19
CPNE3-205ENST00000522240 HSP90AB4PQ58FF6 505 aa16.21■□□□□ 0.19
CPNE3-205ENST00000522240 SLC10A5Q5PT55 438 aa16.21■□□□□ 0.19
CPNE3-205ENST00000522240 TPTE2Q6XPS3 522 aa16.21■□□□□ 0.19
CPNE3-205ENST00000522240 NOP58Q9Y2X3 529 aaKnown RBP16.21■□□□□ 0.19
CPNE3-205ENST00000522240 FAM177BA6PVY3 158 aa16.2■□□□□ 0.18
CPNE3-205ENST00000522240 RFX5P48382 616 aaPredicted RBP16.2■□□□□ 0.18
CPNE3-205ENST00000522240 NUTM1Q86Y26 1132 aa16.2■□□□□ 0.18
CPNE3-205ENST00000522240 SYNE4Q8N205 404 aa16.2■□□□□ 0.18
CPNE3-205ENST00000522240 CNBD1Q8NA66 436 aa16.2■□□□□ 0.18
CPNE3-205ENST00000522240 COPRSQ9NQ92 184 aa16.2■□□□□ 0.18
CPNE3-205ENST00000522240 POLRMTO00411 1230 aaKnown RBP16.19■□□□□ 0.18
CPNE3-205ENST00000522240 RAB11FIP3O75154 756 aa16.19■□□□□ 0.18
CPNE3-205ENST00000522240 NUCB1Q02818 461 aa16.19■□□□□ 0.18
CPNE3-205ENST00000522240 DDR1Q08345 913 aa16.19■□□□□ 0.18
CPNE3-205ENST00000522240 ERFEQ4G0M1 354 aa16.19■□□□□ 0.18
CPNE3-205ENST00000522240 TTLL11Q8NHH1 800 aa16.19■□□□□ 0.18
CPNE3-205ENST00000522240 SLC16A10Q8TF71 515 aa16.19■□□□□ 0.18
CPNE3-205ENST00000522240 HCLS1P14317 486 aaPredicted RBP16.18■□□□□ 0.18
CPNE3-205ENST00000522240 GTF2E1P29083 439 aaPredicted RBP16.18■□□□□ 0.18
CPNE3-205ENST00000522240 FAM161AQ3B820 660 aa16.18■□□□□ 0.18
CPNE3-205ENST00000522240 CCDC152Q4G0S7 254 aa16.18■□□□□ 0.18
CPNE3-205ENST00000522240 ERC1Q8IUD2 1116 aa16.18■□□□□ 0.18
CPNE3-205ENST00000522240 SPOCK2Q92563 424 aa16.18■□□□□ 0.18
CPNE3-205ENST00000522240 PDZRN3Q9UPQ7 1066 aa16.18■□□□□ 0.18
CPNE3-205ENST00000522240 EXOC6BQ9Y2D4 811 aa16.18■□□□□ 0.18
CPNE3-205ENST00000522240 CHMP3Q9Y3E7 222 aa16.18■□□□□ 0.18
CPNE3-205ENST00000522240 UTRNP46939 3433 aa16.17■□□□□ 0.18
CPNE3-205ENST00000522240 SURF6O75683 361 aaKnown RBP16.17■□□□□ 0.18
CPNE3-205ENST00000522240 SERPINB2P05120 415 aa16.17■□□□□ 0.18
CPNE3-205ENST00000522240 ST5P78524 1137 aa16.17■□□□□ 0.18
CPNE3-205ENST00000522240 PTPN12Q05209 780 aaKnown RBP16.17■□□□□ 0.18
CPNE3-205ENST00000522240 SF3B3Q15393 1217 aaKnown RBP16.17■□□□□ 0.18
CPNE3-205ENST00000522240 CCDC57Q2TAC2 916 aa16.17■□□□□ 0.18
CPNE3-205ENST00000522240 PRR5LQ6MZQ0 368 aa16.17■□□□□ 0.18
CPNE3-205ENST00000522240 NPHP1O15259 732 aa16.16■□□□□ 0.18
CPNE3-205ENST00000522240 PTGER2P43116 358 aa16.16■□□□□ 0.18
CPNE3-205ENST00000522240 IFIT5Q13325 482 aaKnown RBP16.16■□□□□ 0.18
CPNE3-205ENST00000522240 CHD1LQ86WJ1 897 aa16.16■□□□□ 0.18
CPNE3-205ENST00000522240 PLCD3Q8N3E9 789 aa16.16■□□□□ 0.18
CPNE3-205ENST00000522240 KIF1BPQ96EK5 621 aa16.16■□□□□ 0.18
CPNE3-205ENST00000522240 LRRCC1Q9C099 1032 aa16.16■□□□□ 0.18
CPNE3-205ENST00000522240 ZBTB47Q9UFB7 747 aaPredicted RBP16.16■□□□□ 0.18
CPNE3-205ENST00000522240 PA2G4Q9UQ80 394 aaKnown RBP16.16■□□□□ 0.18
CPNE3-205ENST00000522240 ANKRD31Q8N7Z5 1873 aa16.16■□□□□ 0.18
CPNE3-205ENST00000522240 ANKRD18BA2A2Z9 1011 aa16.15■□□□□ 0.18
CPNE3-205ENST00000522240 CIAO1O76071 339 aa16.15■□□□□ 0.18
CPNE3-205ENST00000522240 MMP10P09238 476 aa16.15■□□□□ 0.18
CPNE3-205ENST00000522240 ITGA6P23229 1130 aa16.15■□□□□ 0.18
CPNE3-205ENST00000522240 ANKRD45Q5TZF3 282 aa16.15■□□□□ 0.18
CPNE3-205ENST00000522240 GREM2Q9H772 168 aa16.15■□□□□ 0.18
CPNE3-205ENST00000522240 PARP3Q9Y6F1 533 aa16.15■□□□□ 0.18
CPNE3-205ENST00000522240 ZBTB7AO95365 584 aa16.14■□□□□ 0.17
CPNE3-205ENST00000522240 CACNB1Q02641 598 aaPredicted RBP16.14■□□□□ 0.17
CPNE3-205ENST00000522240 G3BP1Q13283 466 aaKnown RBP eCLIP16.14■□□□□ 0.17
CPNE3-205ENST00000522240 OS9Q13438 667 aaPredicted RBP16.14■□□□□ 0.17
CPNE3-205ENST00000522240 NLRP3Q96P20 1036 aa16.14■□□□□ 0.17
CPNE3-205ENST00000522240 MTFR1LQ9H019 292 aa16.14■□□□□ 0.17
CPNE3-205ENST00000522240 TAF7LQ5H9L4 462 aa16.13■□□□□ 0.17
CPNE3-205ENST00000522240 MSL1Q68DK7 614 aa16.13■□□□□ 0.17
CPNE3-205ENST00000522240 RHPN1Q8TCX5 695 aa16.13■□□□□ 0.17
CPNE3-205ENST00000522240 LNPKQ9C0E8 428 aa16.13■□□□□ 0.17
CPNE3-205ENST00000522240 PDGFDQ9GZP0 370 aaPredicted RBP16.13■□□□□ 0.17
CPNE3-205ENST00000522240 SPEF2Q9C093 1822 aa16.12■□□□□ 0.17
CPNE3-205ENST00000522240 EYA2O00167 538 aa16.12■□□□□ 0.17
CPNE3-205ENST00000522240 IL15P40933 162 aaPredicted RBP16.12■□□□□ 0.17
CPNE3-205ENST00000522240 KLHDC4Q8TBB5 520 aa16.12■□□□□ 0.17
CPNE3-205ENST00000522240 CDC5LQ99459 802 aaKnown RBP16.12■□□□□ 0.17
CPNE3-205ENST00000522240 A0A1B0GUL6 1792 aa16.11■□□□□ 0.17
CPNE3-205ENST00000522240 PDE4AP27815 886 aa16.11■□□□□ 0.17
CPNE3-205ENST00000522240 CRY2Q49AN0 593 aa16.11■□□□□ 0.17
CPNE3-205ENST00000522240 C3orf67Q6ZVT6 689 aa16.11■□□□□ 0.17
CPNE3-205ENST00000522240 CCDC85AQ96PX6 553 aaPredicted RBP16.11■□□□□ 0.17
CPNE3-205ENST00000522240 SIL1Q9H173 461 aa16.11■□□□□ 0.17
CPNE3-205ENST00000522240 COL11A2P13942 1736 aaPredicted RBP16.11■□□□□ 0.17
CPNE3-205ENST00000522240 C10orf71Q711Q0 1435 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms