RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 RHPN1Q8TCX5 695 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 RBM28Q9NW13 759 aaKnown RBP11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 VPS18Q9P253 973 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 MYO1CO00159 1063 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 ANKRD20A12PQ8NF67 263 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 PUF60Q9UHX1 559 aaKnown RBP11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 ATP10DQ9P241 1426 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 CCDC171Q6TFL3 1326 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 GPS2Q13227 327 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 SEC62Q99442 399 aaKnown RBP11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 FSD1Q9BTV5 496 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 CLSTN2Q9H4D0 955 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 CEP152O94986 1710 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 CYP2C19P33261 490 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 TPM4P67936 248 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 GDAP1L1Q96MZ0 367 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 UTP14AQ9BVJ6 771 aaKnown RBP11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 NRDCO43847 1150 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 POLR3DP05423 398 aaPredicted RBP11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 ATP6V1AP38606 617 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 PLA2G4DQ86XP0 818 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 LSG1Q9H089 658 aaKnown RBP11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 SHROOM2Q13796 1616 aa11.74□□□□□ -0.53
PDGFRB-207ENST00000520579 SHPRHQ149N8 1683 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 TTC36A6NLP5 189 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 IL13P35225 146 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 CCT4P50991 539 aaKnown RBP11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 GNG11P61952 73 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 ST3GAL1Q11201 340 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 FOXR1Q6PIV2 292 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 AACSQ86V21 672 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 XPO4Q9C0E2 1151 aaKnown RBP11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 DDX19AQ9NUU7 478 aaKnown RBP11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 PTCH1Q13635 1447 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 GNAI3P08754 354 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 CCDC102AQ96A19 550 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 CWC15Q9P013 229 aaKnown RBP11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 MAST1Q9Y2H9 1570 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 PPP1R13BQ96KQ4 1090 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 NCOA5Q9HCD5 579 aaKnown RBP11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 FHOD1Q9Y613 1164 aa11.73□□□□□ -0.53
PDGFRB-207ENST00000520579 SERPINC1P01008 464 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 SETQ01105 290 aaPredicted RBP11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 SMC1AQ14683 1233 aaKnown RBP11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 TMEM87AQ8NBN3 555 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 TTC14Q96N46 770 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 RAI14Q9P0K7 980 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 SOS1Q07889 1333 aaPredicted RBP11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 A0A1B0GUL7 405 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 ATP8B2P98198 1209 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 AIMP1Q12904 312 aaKnown RBP11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 DHX8Q14562 1220 aaKnown RBP11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 CCDC129Q6ZRS4 1044 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 CEP57L1Q8IYX8 460 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 SCAND2PQ9GZW5 306 aaPredicted RBP11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 NBPF7P0C2Y1 421 aaPredicted RBP11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 TMEM132AQ24JP5 1023 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 CFAP100Q494V2 611 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 NBPF6Q5VWK0 638 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 NBPF11Q86T75 865 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 TXNDC2Q86VQ3 553 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 NBPF5PQ86XG9 351 aaPredicted RBP11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 KLHDC4Q8TBB5 520 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 CPLX3Q8WVH0 158 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 NBPF4Q96M43 638 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 IRAK4Q9NWZ3 460 aa11.72□□□□□ -0.53
PDGFRB-207ENST00000520579 CCZ1BP86790 482 aa11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 CCZ1P86791 482 aaPredicted RBP11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 TEFQ10587 303 aa11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 IDI1Q13907 227 aa11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 TAF7Q15545 349 aaPredicted RBP11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 NBPF9Q3BBW0 867 aa11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 CREB3L3Q68CJ9 461 aa11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 TDRD7Q8NHU6 1098 aaKnown RBP11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 DESI2Q9BSY9 194 aa11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 RIMS2Q9UQ26 1411 aa11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 NMIQ13287 307 aaPredicted RBP11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 TTC19Q6DKK2 380 aaPredicted RBP11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 TTC37Q6PGP7 1564 aa11.71□□□□□ -0.53
PDGFRB-207ENST00000520579 CLTCL1P53675 1640 aa11.71□□□□□ -0.54
PDGFRB-207ENST00000520579 TFRCP02786 760 aaKnown RBP11.71□□□□□ -0.54
PDGFRB-207ENST00000520579 E4F1Q66K89 784 aaPredicted RBP11.71□□□□□ -0.54
PDGFRB-207ENST00000520579 LEKR1Q6ZMV7 388 aa11.71□□□□□ -0.54
PDGFRB-207ENST00000520579 USHBP1Q8N6Y0 703 aa11.71□□□□□ -0.54
PDGFRB-207ENST00000520579 SLC24A3Q9HC58 644 aa11.71□□□□□ -0.54
PDGFRB-207ENST00000520579 KCNA4P22459 653 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 STX1AQ16623 288 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 FKBP15Q5T1M5 1219 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 SUGCTQ9HAC7 445 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 NPHP3Q7Z494 1330 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 MED14O60244 1454 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 RHOXF2BP0C7M4 288 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 ATP1A3P13637 1013 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 SLFNL1Q499Z3 407 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 CLASRPQ8N2M8 674 aaKnown RBP11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 RHOXF2Q9BQY4 288 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 IQGAP1P46940 1657 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 SASH3O75995 380 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms