RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 NUCB1Q02818 461 aa10.6□□□□□ -0.71
VAPB-206ENST00000520497 TBC1D9BQ66K14 1250 aa10.6□□□□□ -0.71
VAPB-206ENST00000520497 SYT17Q9BSW7 474 aa10.6□□□□□ -0.71
VAPB-206ENST00000520497 MTFR1LQ9H019 292 aa10.6□□□□□ -0.71
VAPB-206ENST00000520497 TRMT112Q9UI30 125 aaKnown RBP10.6□□□□□ -0.71
VAPB-206ENST00000520497 ARAP2Q8WZ64 1704 aa10.6□□□□□ -0.71
VAPB-206ENST00000520497 PNPLA7Q6ZV29 1317 aa10.59□□□□□ -0.71
VAPB-206ENST00000520497 GYS1P13807 737 aa10.59□□□□□ -0.71
VAPB-206ENST00000520497 RFX5P48382 616 aaPredicted RBP10.59□□□□□ -0.71
VAPB-206ENST00000520497 RTL5Q5HYW3 569 aaPredicted RBP10.59□□□□□ -0.71
VAPB-206ENST00000520497 SKAP1Q86WV1 359 aa10.59□□□□□ -0.71
VAPB-206ENST00000520497 SYNE4Q8N205 404 aa10.59□□□□□ -0.71
VAPB-206ENST00000520497 FLAD1Q8NFF5 587 aa10.59□□□□□ -0.71
VAPB-206ENST00000520497 UTP14AQ9BVJ6 771 aaKnown RBP10.59□□□□□ -0.71
VAPB-206ENST00000520497 TFCP2L1Q9NZI6 479 aa10.59□□□□□ -0.71
VAPB-206ENST00000520497 NOP58Q9Y2X3 529 aaKnown RBP10.59□□□□□ -0.71
VAPB-206ENST00000520497 CARMIL3Q8ND23 1372 aa10.59□□□□□ -0.71
VAPB-206ENST00000520497 COL4A1P02462 1669 aa10.59□□□□□ -0.71
VAPB-206ENST00000520497 SH3TC1Q8TE82 1336 aa10.58□□□□□ -0.71
VAPB-206ENST00000520497 RIC1Q4ADV7 1423 aa10.58□□□□□ -0.72
VAPB-206ENST00000520497 KIF13BQ9NQT8 1826 aa10.58□□□□□ -0.72
VAPB-206ENST00000520497 IRS4O14654 1257 aaPredicted RBP10.58□□□□□ -0.72
VAPB-206ENST00000520497 PDE8AO60658 829 aa10.58□□□□□ -0.72
VAPB-206ENST00000520497 CSF1RP07333 972 aa10.58□□□□□ -0.72
VAPB-206ENST00000520497 LMBR1LQ6UX01 489 aa10.58□□□□□ -0.72
VAPB-206ENST00000520497 CHD1LQ86WJ1 897 aa10.58□□□□□ -0.72
VAPB-206ENST00000520497 COL23A1Q86Y22 540 aaPredicted RBP10.58□□□□□ -0.72
VAPB-206ENST00000520497 EXOC6BQ9Y2D4 811 aa10.58□□□□□ -0.72
VAPB-206ENST00000520497 COL11A2P13942 1736 aaPredicted RBP10.58□□□□□ -0.72
VAPB-206ENST00000520497 DLEC1Q9Y238 1755 aa10.57□□□□□ -0.72
VAPB-206ENST00000520497 ABCC12Q96J65 1359 aa10.57□□□□□ -0.72
VAPB-206ENST00000520497 PDE4AP27815 886 aa10.57□□□□□ -0.72
VAPB-206ENST00000520497 CTSWP56202 376 aa10.57□□□□□ -0.72
VAPB-206ENST00000520497 PTPN12Q05209 780 aaKnown RBP10.57□□□□□ -0.72
VAPB-206ENST00000520497 NFIXQ14938 502 aa10.57□□□□□ -0.72
VAPB-206ENST00000520497 SETDB2Q96T68 719 aa10.57□□□□□ -0.72
VAPB-206ENST00000520497 COPRSQ9NQ92 184 aa10.57□□□□□ -0.72
VAPB-206ENST00000520497 PA2G4Q9UQ80 394 aaKnown RBP10.57□□□□□ -0.72
VAPB-206ENST00000520497 MYH13Q9UKX3 1938 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 RTL9Q8NET4 1388 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 RAB11FIP3O75154 756 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 TM4SF1P30408 202 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 HSP90AB4PQ58FF6 505 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 SLC10A5Q5PT55 438 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 ANKRD45Q5TZF3 282 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 CHRDL2Q6WN34 429 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 BICDL1Q6ZP65 573 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 NUTM1Q86Y26 1132 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 KLHL34Q8N239 644 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 TTLL11Q8NHH1 800 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 NYXQ9GZU5 481 aa10.56□□□□□ -0.72
VAPB-206ENST00000520497 ZBTB47Q9UFB7 747 aaPredicted RBP10.56□□□□□ -0.72
VAPB-206ENST00000520497 LRRC37AA6NMS7 1700 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 MYH7P12883 1935 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 AKAP11Q9UKA4 1901 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 FAM177BA6PVY3 158 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 SURF6O75683 361 aaKnown RBP10.55□□□□□ -0.72
VAPB-206ENST00000520497 HCLS1P14317 486 aaPredicted RBP10.55□□□□□ -0.72
VAPB-206ENST00000520497 HSP90B1P14625 803 aaKnown RBP10.55□□□□□ -0.72
VAPB-206ENST00000520497 FAM161AQ3B820 660 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 ERFEQ4G0M1 354 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 MSL1Q68DK7 614 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 NLGN2Q8NFZ4 835 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 RHPN1Q8TCX5 695 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 LRRCC1Q9C099 1032 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 LNPKQ9C0E8 428 aa10.55□□□□□ -0.72
VAPB-206ENST00000520497 POLRMTO00411 1230 aaKnown RBP10.54□□□□□ -0.72
VAPB-206ENST00000520497 RGS3P49796 1198 aa10.54□□□□□ -0.72
VAPB-206ENST00000520497 TPTE2Q6XPS3 522 aa10.54□□□□□ -0.72
VAPB-206ENST00000520497 NBPF5PQ86XG9 351 aaPredicted RBP10.54□□□□□ -0.72
VAPB-206ENST00000520497 ERC1Q8IUD2 1116 aa10.54□□□□□ -0.72
VAPB-206ENST00000520497 KLHDC4Q8TBB5 520 aa10.54□□□□□ -0.72
VAPB-206ENST00000520497 KIF1BPQ96EK5 621 aa10.54□□□□□ -0.72
VAPB-206ENST00000520497 SALL3Q9BXA9 1300 aa10.54□□□□□ -0.72
VAPB-206ENST00000520497 MYO5AQ9Y4I1 1855 aaKnown RBP10.53□□□□□ -0.72
VAPB-206ENST00000520497 SMARCA5O60264 1052 aaPredicted RBP10.53□□□□□ -0.72
VAPB-206ENST00000520497 SASH1O94885 1247 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 ITGA6P23229 1130 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 DDR1Q08345 913 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 SF3B3Q15393 1217 aaKnown RBP10.53□□□□□ -0.72
VAPB-206ENST00000520497 PRR5LQ6MZQ0 368 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 ATG9AQ7Z3C6 839 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 NLGN1Q8N2Q7 840 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 GREM2Q9H772 168 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 FBXO3Q9UK99 471 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 CHMP3Q9Y3E7 222 aa10.53□□□□□ -0.72
VAPB-206ENST00000520497 BRCA1P38398 1863 aaKnown RBP10.53□□□□□ -0.72
VAPB-206ENST00000520497 APBB1O00213 710 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 CIAO1O76071 339 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 G3BP1Q13283 466 aaKnown RBP eCLIP10.52□□□□□ -0.738e-6■■□□□ 11.5
VAPB-206ENST00000520497 IFIT5Q13325 482 aaKnown RBP10.52□□□□□ -0.73
VAPB-206ENST00000520497 CCDC57Q2TAC2 916 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 CCDC152Q4G0S7 254 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 C3orf67Q6ZVT6 689 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 PLEKHM2Q8IWE5 1019 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 CNBD1Q8NA66 436 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 ZNF594Q96JF6 807 aaPredicted RBP10.52□□□□□ -0.73
VAPB-206ENST00000520497 SIL1Q9H173 461 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 LTBP1Q14766 1721 aa10.52□□□□□ -0.73
VAPB-206ENST00000520497 KIAA1551Q9HCM1 1747 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms