RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 ZNF587Q96SQ5 575 aaPredicted RBP8.8□□□□□ -1
NUP54-218ENST00000515460 HINFPQ9BQA5 517 aa8.8□□□□□ -1
NUP54-218ENST00000515460 KCNH4Q9UQ05 1017 aa8.8□□□□□ -1
NUP54-218ENST00000515460 PLB1Q6P1J6 1458 aa8.79□□□□□ -1
NUP54-218ENST00000515460 ADARB2-AS1A8MUL3 147 aa8.79□□□□□ -1
NUP54-218ENST00000515460 SEC13P55735 322 aa8.79□□□□□ -1
NUP54-218ENST00000515460 LARP1Q6PKG0 1096 aaKnown RBP8.79□□□□□ -1
NUP54-218ENST00000515460 C8orf86Q6ZUL3 223 aa8.79□□□□□ -1
NUP54-218ENST00000515460 GAS2L2Q8NHY3 880 aa8.79□□□□□ -1
NUP54-218ENST00000515460 MDFIQ99750 246 aa8.79□□□□□ -1
NUP54-218ENST00000515460 IGFLR1Q9H665 355 aa8.79□□□□□ -1
NUP54-218ENST00000515460 MAFBQ9Y5Q3 323 aaPredicted RBP8.79□□□□□ -1
NUP54-218ENST00000515460 EPRSP07814 1512 aaKnown RBP8.79□□□□□ -1
NUP54-218ENST00000515460 SPATA31C1P0DKV0 1188 aa8.78□□□□□ -1
NUP54-218ENST00000515460 ADH7P40394 386 aa8.78□□□□□ -1
NUP54-218ENST00000515460 TYRO3Q06418 890 aa8.78□□□□□ -1
NUP54-218ENST00000515460 TBC1D8BQ0IIM8 1120 aa8.78□□□□□ -1
NUP54-218ENST00000515460 DOC2BQ14184 412 aa8.78□□□□□ -1
NUP54-218ENST00000515460 BHMTQ93088 406 aa8.78□□□□□ -1
NUP54-218ENST00000515460 C2orf49Q9BVC5 232 aaPredicted RBP8.78□□□□□ -1
NUP54-218ENST00000515460 STARD13Q9Y3M8 1113 aa8.78□□□□□ -1
NUP54-218ENST00000515460 FAM229AH3BQW9 127 aa8.77□□□□□ -1.01
NUP54-218ENST00000515460 ALBP02768 609 aa8.77□□□□□ -1.01
NUP54-218ENST00000515460 PRRT3Q5FWE3 981 aa8.77□□□□□ -1.01
NUP54-218ENST00000515460 TNFRSF25Q93038 417 aa8.77□□□□□ -1.01
NUP54-218ENST00000515460 PPP1R12CQ9BZL4 782 aa8.77□□□□□ -1.01
NUP54-218ENST00000515460 ZNF335Q9H4Z2 1342 aaPredicted RBP8.77□□□□□ -1.01
NUP54-218ENST00000515460 SPDYE3A6NKU9 549 aa8.76□□□□□ -1.01
NUP54-218ENST00000515460 KCNQ4P56696 695 aa8.76□□□□□ -1.01
NUP54-218ENST00000515460 CRTC2Q53ET0 693 aaPredicted RBP8.76□□□□□ -1.01
NUP54-218ENST00000515460 BTLAQ7Z6A9 289 aa8.76□□□□□ -1.01
NUP54-218ENST00000515460 MICALL1Q8N3F8 863 aa8.76□□□□□ -1.01
NUP54-218ENST00000515460 GATA4P43694 442 aa8.75□□□□□ -1.01
NUP54-218ENST00000515460 DPYDQ12882 1025 aa8.75□□□□□ -1.01
NUP54-218ENST00000515460 CFAP43Q8NDM7 1665 aa8.75□□□□□ -1.01
NUP54-218ENST00000515460 ABCA10Q8WWZ4 1543 aa8.75□□□□□ -1.01
NUP54-218ENST00000515460 UBE2OQ9C0C9 1292 aaKnown RBP8.74□□□□□ -1.01
NUP54-218ENST00000515460 APBA3O96018 575 aa8.73□□□□□ -1.01
NUP54-218ENST00000515460 LMOD1P29536 600 aaPredicted RBP8.73□□□□□ -1.01
NUP54-218ENST00000515460 TRIM28Q13263 835 aaKnown RBP8.73□□□□□ -1.01
NUP54-218ENST00000515460 PTK7Q13308 1070 aa8.73□□□□□ -1.01
NUP54-218ENST00000515460 COL9A3Q14050 684 aaPredicted RBP8.73□□□□□ -1.01
NUP54-218ENST00000515460 XP32Q5T750 250 aa8.73□□□□□ -1.01
NUP54-218ENST00000515460 KANK4Q5T7N3 995 aaPredicted RBP8.73□□□□□ -1.01
NUP54-218ENST00000515460 STAG2Q8N3U4 1231 aa8.73□□□□□ -1.01
NUP54-218ENST00000515460 SEMA6BQ9H3T3 888 aa8.73□□□□□ -1.01
NUP54-218ENST00000515460 KIAA0586Q9BVV6 1533 aa8.72□□□□□ -1.01
NUP54-218ENST00000515460 CEBPAP49715 358 aaPredicted RBP8.72□□□□□ -1.01
NUP54-218ENST00000515460 VRTNQ9H8Y1 702 aa8.72□□□□□ -1.01
NUP54-218ENST00000515460 PRDM6Q9NQX0 595 aa8.72□□□□□ -1.01
NUP54-218ENST00000515460 ZNF777Q9ULD5 760 aaPredicted RBP8.72□□□□□ -1.01
NUP54-218ENST00000515460 CUL7Q14999 1698 aa8.72□□□□□ -1.01
NUP54-218ENST00000515460 WRNQ14191 1432 aaPredicted RBP eCLIP8.71□□□□□ -1.01
NUP54-218ENST00000515460 ABCC2Q92887 1545 aa8.71□□□□□ -1.01
NUP54-218ENST00000515460 GRIK4Q16099 956 aa8.71□□□□□ -1.02
NUP54-218ENST00000515460 HIF1AQ16665 826 aa8.71□□□□□ -1.02
NUP54-218ENST00000515460 TRAPPC3LQ5T215 181 aa8.71□□□□□ -1.02
NUP54-218ENST00000515460 NUDT8Q8WV74 236 aa8.71□□□□□ -1.02
NUP54-218ENST00000515460 PNMA5Q96PV4 448 aa8.71□□□□□ -1.02
NUP54-218ENST00000515460 USP17L15C9J2P7 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L10C9JJH3 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L13C9JLJ4 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L12C9JPN9 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L11C9JVI0 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L21D6R901 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L18D6R9N7 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L22D6RA61 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L17D6RBQ6 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L19D6RCP7 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L20D6RJB6 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 LILRB5O75023 590 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 USP17L24Q0WX57 530 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 RTN1Q16799 776 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 C20orf204Q6ZNR8 217 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 ANKMY2Q8IV38 441 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 GSX2Q9BZM3 304 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 BCS1LQ9Y276 419 aa8.7□□□□□ -1.02
NUP54-218ENST00000515460 ADAMTS12P58397 1594 aa8.69□□□□□ -1.02
NUP54-218ENST00000515460 PREX1Q8TCU6 1659 aa8.69□□□□□ -1.02
NUP54-218ENST00000515460 NID1P14543 1247 aa8.69□□□□□ -1.02
NUP54-218ENST00000515460 JPH1Q9HDC5 661 aaPredicted RBP8.69□□□□□ -1.02
NUP54-218ENST00000515460 KLK14Q9P0G3 267 aa8.69□□□□□ -1.02
NUP54-218ENST00000515460 SLC6A14Q9UN76 642 aa8.69□□□□□ -1.02
NUP54-218ENST00000515460 ABCA5Q8WWZ7 1642 aa8.69□□□□□ -1.02
NUP54-218ENST00000515460 FAM196BA6NMK8 535 aa8.68□□□□□ -1.02
NUP54-218ENST00000515460 RAPGEF3O95398 923 aa8.68□□□□□ -1.02
NUP54-218ENST00000515460 IGFBP4P22692 258 aa8.68□□□□□ -1.02
NUP54-218ENST00000515460 MLECQ14165 292 aa8.68□□□□□ -1.02
NUP54-218ENST00000515460 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.68□□□□□ -1.02
NUP54-218ENST00000515460 FHAD1B1AJZ9 1412 aa8.68□□□□□ -1.02
NUP54-218ENST00000515460 TGFBR3LH3BV60 316 aa8.67□□□□□ -1.02
NUP54-218ENST00000515460 NFKB1P19838 968 aa8.67□□□□□ -1.02
NUP54-218ENST00000515460 CCINQ13939 588 aa8.67□□□□□ -1.02
NUP54-218ENST00000515460 CDCA8Q53HL2 280 aa8.67□□□□□ -1.02
NUP54-218ENST00000515460 Q8N3U1 123 aa8.67□□□□□ -1.02
NUP54-218ENST00000515460 DNAJB12Q9NXW2 375 aaKnown RBP8.67□□□□□ -1.02
NUP54-218ENST00000515460 SETBP1Q9Y6X0 1596 aa8.66□□□□□ -1.02
NUP54-218ENST00000515460 TOM1O60784 492 aa8.66□□□□□ -1.02
NUP54-218ENST00000515460 ITGB7P26010 798 aa8.66□□□□□ -1.02
NUP54-218ENST00000515460 IER5Q5VY09 327 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms