RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 AOC3Q16853 763 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 CC2D2BQ6DHV5 1058 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 SP8Q8IXZ3 490 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 LARGE2Q8N3Y3 721 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 DNAAF4Q8WXU2 420 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 PSMD1Q99460 953 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 TMX4Q9H1E5 349 aaPredicted RBP14.7□□□□□ -0.06
VCAN-212ENST00000515397 ARFGEF2Q9Y6D5 1785 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 SNED1Q8TER0 1413 aa14.69□□□□□ -0.06
VCAN-212ENST00000515397 VEGFAP15692 232 aaPredicted RBP14.69□□□□□ -0.06
VCAN-212ENST00000515397 DPP8Q6V1X1 898 aaPredicted RBP14.69□□□□□ -0.06
VCAN-212ENST00000515397 MPNDQ8N594 471 aa14.69□□□□□ -0.06
VCAN-212ENST00000515397 GPR101Q96P66 508 aaPredicted RBP14.69□□□□□ -0.06
VCAN-212ENST00000515397 ZC3H4Q9UPT8 1303 aaKnown RBP14.68□□□□□ -0.06
VCAN-212ENST00000515397 COL4A1P02462 1669 aa14.68□□□□□ -0.06
VCAN-212ENST00000515397 PPIP5K2O43314 1243 aa14.68□□□□□ -0.06
VCAN-212ENST00000515397 PDE8AO60658 829 aa14.68□□□□□ -0.06
VCAN-212ENST00000515397 RPS8P62241 208 aaKnown RBP14.68□□□□□ -0.06
VCAN-212ENST00000515397 UBE3BQ7Z3V4 1068 aa14.68□□□□□ -0.06
VCAN-212ENST00000515397 JDP2Q8WYK2 163 aa14.68□□□□□ -0.06
VCAN-212ENST00000515397 NSFL1CQ9UNZ2 370 aaKnown RBP14.68□□□□□ -0.06
VCAN-212ENST00000515397 GJA3Q9Y6H8 435 aa14.68□□□□□ -0.06
VCAN-212ENST00000515397 E9PSI1 815 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 FZD9O00144 591 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 POTEIP0CG38 1075 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 POTEJP0CG39 1038 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 GPSM2P81274 684 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 HTRA3P83110 453 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 GCKRQ14397 625 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 BCL2L13Q9BXK5 485 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 COL4A5P29400 1685 aa14.67□□□□□ -0.06
VCAN-212ENST00000515397 LAMB2P55268 1798 aa14.66□□□□□ -0.06
VCAN-212ENST00000515397 H7C1W4 665 aa14.66□□□□□ -0.06
VCAN-212ENST00000515397 RIMBP2O15034 1052 aa14.66□□□□□ -0.06
VCAN-212ENST00000515397 HSPA6P17066 643 aa14.66□□□□□ -0.06
VCAN-212ENST00000515397 IFFO2Q5TF58 517 aa14.66□□□□□ -0.06
VCAN-212ENST00000515397 SLC4A10Q6U841 1118 aa14.66□□□□□ -0.06
VCAN-212ENST00000515397 RBM46Q8TBY0 533 aaKnown RBP14.66□□□□□ -0.06
VCAN-212ENST00000515397 DDX60Q8IY21 1712 aaKnown RBP14.66□□□□□ -0.06
VCAN-212ENST00000515397 WTIPA6NIX2 430 aaPredicted RBP14.65□□□□□ -0.06
VCAN-212ENST00000515397 C6orf229H3BNL8 230 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 CCDC152Q4G0S7 254 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 BEND3Q5T5X7 828 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 NIM1KQ8IY84 436 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 MRPL50Q8N5N7 158 aaKnown RBP14.65□□□□□ -0.06
VCAN-212ENST00000515397 LINS1Q8NG48 757 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 SSH1Q8WYL5 1049 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 GREM2Q9H772 168 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 POLLQ9UGP5 575 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 TIAM2Q8IVF5 1701 aa14.65□□□□□ -0.06
VCAN-212ENST00000515397 CTSWP56202 376 aa14.64□□□□□ -0.07
VCAN-212ENST00000515397 EIF6P56537 245 aaKnown RBP14.64□□□□□ -0.07
VCAN-212ENST00000515397 TTLL11Q8NHH1 800 aa14.64□□□□□ -0.07
VCAN-212ENST00000515397 RTFDC1Q9BY42 306 aaPredicted RBP14.64□□□□□ -0.07
VCAN-212ENST00000515397 CDHR2Q9BYE9 1310 aa14.64□□□□□ -0.07
VCAN-212ENST00000515397 DICER1Q9UPY3 1922 aaKnown RBP14.63□□□□□ -0.07
VCAN-212ENST00000515397 RAD17O75943 681 aa14.63□□□□□ -0.07
VCAN-212ENST00000515397 CASP7P55210 303 aa14.63□□□□□ -0.07
VCAN-212ENST00000515397 GRIPAP1Q4V328 841 aa14.63□□□□□ -0.07
VCAN-212ENST00000515397 EAPPQ56P03 285 aaPredicted RBP14.63□□□□□ -0.07
VCAN-212ENST00000515397 CEP350Q5VT06 3117 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 HSP90B1P14625 803 aaKnown RBP14.62□□□□□ -0.07
VCAN-212ENST00000515397 CXCL9Q07325 125 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 DOK7Q18PE1 504 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 WASHC4Q2M389 1173 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 ANKRD18AQ8IVF6 992 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 TRMT2AQ8IZ69 625 aaKnown RBP14.62□□□□□ -0.07
VCAN-212ENST00000515397 SMC1BQ8NDV3 1235 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 SUPT20HQ8NEM7 779 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 TAF1DQ9H5J8 278 aaPredicted RBP14.62□□□□□ -0.07
VCAN-212ENST00000515397 KCNQ5Q9NR82 932 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 ANKIB1Q9P2G1 1089 aa14.62□□□□□ -0.07
VCAN-212ENST00000515397 EPS15P42566 896 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 KIAA2012Q0VF49 1180 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 EPHA10Q5JZY3 1008 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 TMC4Q7Z404 712 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 GPC2Q8N158 579 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 TBC1D16Q8TBP0 767 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 L3MBTL3Q96JM7 780 aaPredicted RBP14.61□□□□□ -0.07
VCAN-212ENST00000515397 DBNDD1Q9H9R9 158 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 HACL1Q9UJ83 578 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 ZNRF3Q9ULT6 936 aa14.61□□□□□ -0.07
VCAN-212ENST00000515397 YDJCA8MPS7 323 aa14.6□□□□□ -0.07
VCAN-212ENST00000515397 EPHX2P34913 555 aa14.6□□□□□ -0.07
VCAN-212ENST00000515397 FSTL1Q12841 308 aa14.6□□□□□ -0.07
VCAN-212ENST00000515397 FAM161AQ3B820 660 aa14.6□□□□□ -0.07
VCAN-212ENST00000515397 CLEC11AQ9Y240 323 aa14.6□□□□□ -0.07
VCAN-212ENST00000515397 CHMP3Q9Y3E7 222 aa14.6□□□□□ -0.07
VCAN-212ENST00000515397 UFL1O94874 794 aa14.59□□□□□ -0.07
VCAN-212ENST00000515397 ITGA6P23229 1130 aa14.59□□□□□ -0.07
VCAN-212ENST00000515397 FOXO4P98177 505 aa14.59□□□□□ -0.07
VCAN-212ENST00000515397 SRCIN1Q9C0H9 1055 aa14.59□□□□□ -0.07
VCAN-212ENST00000515397 C9orf78Q9NZ63 289 aaPredicted RBP14.59□□□□□ -0.07
VCAN-212ENST00000515397 WDR90Q96KV7 1748 aa14.58□□□□□ -0.07
VCAN-212ENST00000515397 SHTN1A0MZ66 631 aa14.58□□□□□ -0.08
VCAN-212ENST00000515397 IQCA1LA6NCM1 817 aa14.58□□□□□ -0.08
VCAN-212ENST00000515397 CSF1RP07333 972 aa14.58□□□□□ -0.08
VCAN-212ENST00000515397 SCNN1DP51172 638 aa14.58□□□□□ -0.08
VCAN-212ENST00000515397 HNRNPUQ00839 825 aaKnown RBP eCLIP14.58□□□□□ -0.08
VCAN-212ENST00000515397 CHADLQ6NUI6 762 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms