RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 BLOC1S2Q6QNY1 142 aa17.77■□□□□ 0.44
NUP54-217ENST00000514987 FOXD4L4Q8WXT5 416 aaPredicted RBP17.77■□□□□ 0.44
NUP54-217ENST00000514987 CIAO1O76071 339 aa17.76■□□□□ 0.43
NUP54-217ENST00000514987 ADCK5Q3MIX3 580 aa17.76■□□□□ 0.43
NUP54-217ENST00000514987 LRSAM1Q6UWE0 723 aa17.76■□□□□ 0.43
NUP54-217ENST00000514987 VSIG10Q8N0Z9 540 aa17.76■□□□□ 0.43
NUP54-217ENST00000514987 U3KPZ7 1027 aaPredicted RBP17.76■□□□□ 0.43
NUP54-217ENST00000514987 TJP1Q07157 1748 aa17.76■□□□□ 0.43
NUP54-217ENST00000514987 SYT1P21579 422 aa17.75■□□□□ 0.43
NUP54-217ENST00000514987 TTLL7Q6ZT98 887 aa17.75■□□□□ 0.43
NUP54-217ENST00000514987 FBXO3Q9UK99 471 aa17.75■□□□□ 0.43
NUP54-217ENST00000514987 TAF5LO75529 589 aa17.74■□□□□ 0.43
NUP54-217ENST00000514987 A1BGP04217 495 aa17.74■□□□□ 0.43
NUP54-217ENST00000514987 TRIM28Q13263 835 aaKnown RBP17.74■□□□□ 0.43
NUP54-217ENST00000514987 DDX54Q8TDD1 881 aaKnown RBP17.74■□□□□ 0.43
NUP54-217ENST00000514987 JARID2Q92833 1246 aaPredicted RBP17.74■□□□□ 0.43
NUP54-217ENST00000514987 TMOD3Q9NYL9 352 aa17.74■□□□□ 0.43
NUP54-217ENST00000514987 F13A1P00488 732 aa17.74■□□□□ 0.43
NUP54-217ENST00000514987 PDCP20941 246 aa17.74■□□□□ 0.43
NUP54-217ENST00000514987 RPS6KB1P23443 525 aa17.74■□□□□ 0.43
NUP54-217ENST00000514987 DBNDD2Q9BQY9 259 aa17.74■□□□□ 0.43
NUP54-217ENST00000514987 TMEM63CQ9P1W3 806 aa17.74■□□□□ 0.43
NUP54-217ENST00000514987 PALLDQ8WX93 1383 aa17.73■□□□□ 0.43
NUP54-217ENST00000514987 SPEF2Q9C093 1822 aa17.73■□□□□ 0.43
NUP54-217ENST00000514987 LETM1O95202 739 aaPredicted RBP17.73■□□□□ 0.43
NUP54-217ENST00000514987 MCMDC2Q4G0Z9 681 aa17.73■□□□□ 0.43
NUP54-217ENST00000514987 CCDC83Q8IWF9 413 aa17.73■□□□□ 0.43
NUP54-217ENST00000514987 KBTBD3Q8NAB2 608 aa17.73■□□□□ 0.43
NUP54-217ENST00000514987 ISCA1Q9BUE6 129 aa17.73■□□□□ 0.43
NUP54-217ENST00000514987 CHMP3Q9Y3E7 222 aa17.73■□□□□ 0.43
NUP54-217ENST00000514987 SH3TC1Q8TE82 1336 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 EYA2O00167 538 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 CPA1P15085 419 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 GJB2P29033 226 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 CLCN1P35523 988 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 ATG9AQ7Z3C6 839 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 USP48Q86UV5 1035 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.72■□□□□ 0.43
NUP54-217ENST00000514987 RRAGDQ9NQL2 400 aaPredicted RBP17.72■□□□□ 0.43
NUP54-217ENST00000514987 STRN4Q9NRL3 753 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 HELLSQ9NRZ9 838 aa17.72■□□□□ 0.43
NUP54-217ENST00000514987 ZNF335Q9H4Z2 1342 aaPredicted RBP17.71■□□□□ 0.43
NUP54-217ENST00000514987 PRIM1P49642 420 aaKnown RBP17.71■□□□□ 0.43
NUP54-217ENST00000514987 TCIRG1Q13488 830 aa17.71■□□□□ 0.43
NUP54-217ENST00000514987 LRRFIP1Q32MZ4 808 aaKnown RBP17.71■□□□□ 0.43
NUP54-217ENST00000514987 RBM27Q9P2N5 1060 aaKnown RBP17.71■□□□□ 0.43
NUP54-217ENST00000514987 LARGE1O95461 756 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 STARD3NLO95772 234 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 UBE2HP62256 183 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 ME3Q16798 604 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 HS1BP3Q53T59 392 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 KIF6Q6ZMV9 814 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 DNAJC2Q99543 621 aaKnown RBP17.7■□□□□ 0.42
NUP54-217ENST00000514987 ZBTB3Q9H5J0 574 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 TOGARAM1Q9Y4F4 1720 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 ESPNB1AK53 854 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 HMGB1P09429 215 aaKnown RBP17.7■□□□□ 0.42
NUP54-217ENST00000514987 ZNF589Q86UQ0 364 aaPredicted RBP17.7■□□□□ 0.42
NUP54-217ENST00000514987 RBSNQ9H1K0 784 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 TPCN1Q9ULQ1 816 aa17.7■□□□□ 0.42
NUP54-217ENST00000514987 SYCE3A1L190 88 aa17.69■□□□□ 0.42
NUP54-217ENST00000514987 CHAMP1Q96JM3 812 aa17.69■□□□□ 0.42
NUP54-217ENST00000514987 PLA2G12BQ9BX93 195 aa17.69■□□□□ 0.42
NUP54-217ENST00000514987 PAG1Q9NWQ8 432 aa17.69■□□□□ 0.42
NUP54-217ENST00000514987 MTMR6Q9Y217 621 aa17.69■□□□□ 0.42
NUP54-217ENST00000514987 AKAP2Q9Y2D5 859 aa17.69■□□□□ 0.42
NUP54-217ENST00000514987 ZNF609O15014 1411 aa17.69■□□□□ 0.42
NUP54-217ENST00000514987 PCCAP05165 728 aaPredicted RBP17.68■□□□□ 0.42
NUP54-217ENST00000514987 CCDC57Q2TAC2 916 aa17.68■□□□□ 0.42
NUP54-217ENST00000514987 NEUROD6Q96NK8 337 aa17.68■□□□□ 0.42
NUP54-217ENST00000514987 NEK1Q96PY6 1258 aa17.68■□□□□ 0.42
NUP54-217ENST00000514987 LARP6Q9BRS8 491 aaKnown RBP17.68■□□□□ 0.42
NUP54-217ENST00000514987 TSPY26PQ9H489 355 aa17.68■□□□□ 0.42
NUP54-217ENST00000514987 CEP126Q9P2H0 1117 aa17.68■□□□□ 0.42
NUP54-217ENST00000514987 NSFL1CQ9UNZ2 370 aaKnown RBP17.68■□□□□ 0.42
NUP54-217ENST00000514987 LRP6O75581 1613 aa17.68■□□□□ 0.42
NUP54-217ENST00000514987 HSP90AB3PQ58FF7 597 aa17.67■□□□□ 0.42
NUP54-217ENST00000514987 CCDC183Q5T5S1 534 aa17.67■□□□□ 0.42
NUP54-217ENST00000514987 EDC3Q96F86 508 aaKnown RBP17.67■□□□□ 0.42
NUP54-217ENST00000514987 DSCC1Q9BVC3 393 aa17.67■□□□□ 0.42
NUP54-217ENST00000514987 COL14A1Q05707 1796 aaKnown RBP17.67■□□□□ 0.42
NUP54-217ENST00000514987 LARP1BQ659C4 914 aaKnown RBP17.66■□□□□ 0.42
NUP54-217ENST00000514987 FAM184AQ8NB25 1140 aa17.66■□□□□ 0.42
NUP54-217ENST00000514987 CHMP4CQ96CF2 233 aa17.66■□□□□ 0.42
NUP54-217ENST00000514987 CNPY2Q9Y2B0 182 aa17.66■□□□□ 0.42
NUP54-217ENST00000514987 ABCC12Q96J65 1359 aa17.66■□□□□ 0.42
NUP54-217ENST00000514987 IFIT1P09914 478 aaKnown RBP17.66■□□□□ 0.42
NUP54-217ENST00000514987 ST3GAL1Q11201 340 aa17.66■□□□□ 0.42
NUP54-217ENST00000514987 TOB2Q14106 344 aaPredicted RBP17.66■□□□□ 0.42
NUP54-217ENST00000514987 DDX46Q7L014 1031 aaKnown RBP17.66■□□□□ 0.42
NUP54-217ENST00000514987 ZBTB38Q8NAP3 1195 aaPredicted RBP17.66■□□□□ 0.42
NUP54-217ENST00000514987 TCHHQ07283 1943 aa17.65■□□□□ 0.42
NUP54-217ENST00000514987 GADD45BO75293 160 aaPredicted RBP17.65■□□□□ 0.42
NUP54-217ENST00000514987 ZMYM1Q5SVZ6 1142 aa17.65■□□□□ 0.42
NUP54-217ENST00000514987 NECAB1Q8N987 351 aa17.65■□□□□ 0.42
NUP54-217ENST00000514987 PDLIM2Q96JY6 352 aa17.65■□□□□ 0.42
NUP54-217ENST00000514987 MAP3K15Q6ZN16 1313 aa17.64■□□□□ 0.42
NUP54-217ENST00000514987 CDHR2Q9BYE9 1310 aa17.64■□□□□ 0.42
NUP54-217ENST00000514987 A0A1B0GUL7 405 aa17.64■□□□□ 0.41
NUP54-217ENST00000514987 GOLIM4O00461 696 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms