RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CTSWP56202 376 aa18■□□□□ 0.47
NUP54-216ENST00000514901 GRAPQ13588 217 aa18■□□□□ 0.47
NUP54-216ENST00000514901 TMC4Q7Z404 712 aa18■□□□□ 0.47
NUP54-216ENST00000514901 GRAPLQ8TC17 118 aaPredicted RBP18■□□□□ 0.47
NUP54-216ENST00000514901 SLX4Q8IY92 1834 aa18■□□□□ 0.47
NUP54-216ENST00000514901 UTYO14607 1347 aa17.99■□□□□ 0.47
NUP54-216ENST00000514901 ABCC4O15439 1325 aa17.99■□□□□ 0.47
NUP54-216ENST00000514901 DDX60Q8IY21 1712 aaKnown RBP17.99■□□□□ 0.47
NUP54-216ENST00000514901 TRIM27P14373 513 aa17.99■□□□□ 0.47
NUP54-216ENST00000514901 INTS3Q68E01 1043 aaKnown RBP17.99■□□□□ 0.47
NUP54-216ENST00000514901 TTLL11Q8NHH1 800 aa17.99■□□□□ 0.47
NUP54-216ENST00000514901 HDAC5Q9UQL6 1122 aa17.99■□□□□ 0.47
NUP54-216ENST00000514901 PPEF1O14829 653 aaPredicted RBP17.98■□□□□ 0.47
NUP54-216ENST00000514901 CCDC93Q567U6 631 aa17.98■□□□□ 0.47
NUP54-216ENST00000514901 RTKN2Q8IZC4 609 aa17.98■□□□□ 0.47
NUP54-216ENST00000514901 LAMB2P55268 1798 aa17.97■□□□□ 0.47
NUP54-216ENST00000514901 RTL9Q8NET4 1388 aa17.97■□□□□ 0.47
NUP54-216ENST00000514901 CSF1RP07333 972 aa17.97■□□□□ 0.47
NUP54-216ENST00000514901 MS4A1P11836 297 aa17.97■□□□□ 0.47
NUP54-216ENST00000514901 RPS8P62241 208 aaKnown RBP17.97■□□□□ 0.47
NUP54-216ENST00000514901 SP8Q8IXZ3 490 aa17.97■□□□□ 0.47
NUP54-216ENST00000514901 USP44Q9H0E7 712 aa17.97■□□□□ 0.47
NUP54-216ENST00000514901 ZNF219Q9P2Y4 722 aaPredicted RBP17.97■□□□□ 0.47
NUP54-216ENST00000514901 ATP6V0A2Q9Y487 856 aa17.97■□□□□ 0.47
NUP54-216ENST00000514901 NBPF7P0C2Y1 421 aaPredicted RBP17.96■□□□□ 0.47
NUP54-216ENST00000514901 CDC5LQ99459 802 aaKnown RBP17.96■□□□□ 0.47
NUP54-216ENST00000514901 CHD4Q14839 1912 aa17.96■□□□□ 0.47
NUP54-216ENST00000514901 FOXO4P98177 505 aa17.95■□□□□ 0.46
NUP54-216ENST00000514901 FTSJ3Q8IY81 847 aaKnown RBP17.95■□□□□ 0.46
NUP54-216ENST00000514901 LTBP3Q9NS15 1303 aa17.95■□□□□ 0.46
NUP54-216ENST00000514901 MYH3P11055 1940 aa17.94■□□□□ 0.46
NUP54-216ENST00000514901 ANKRD18AQ8IVF6 992 aa17.94■□□□□ 0.46
NUP54-216ENST00000514901 DZIP1LQ8IYY4 767 aaKnown RBP17.94■□□□□ 0.46
NUP54-216ENST00000514901 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.94■□□□□ 0.46
NUP54-216ENST00000514901 CELF1Q92879 486 aaKnown RBP17.94■□□□□ 0.46
NUP54-216ENST00000514901 CCDC85AQ96PX6 553 aaPredicted RBP17.94■□□□□ 0.46
NUP54-216ENST00000514901 TAOK3Q9H2K8 898 aa17.94■□□□□ 0.46
NUP54-216ENST00000514901 GREM2Q9H772 168 aa17.94■□□□□ 0.46
NUP54-216ENST00000514901 SEC31BQ9NQW1 1179 aa17.94■□□□□ 0.46
NUP54-216ENST00000514901 CLUAP1Q96AJ1 413 aa17.93■□□□□ 0.46
NUP54-216ENST00000514901 SUCLG2Q96I99 432 aa17.93■□□□□ 0.46
NUP54-216ENST00000514901 CACNA1SQ13698 1873 aa17.92■□□□□ 0.46
NUP54-216ENST00000514901 ANKRD18BA2A2Z9 1011 aa17.92■□□□□ 0.46
NUP54-216ENST00000514901 NFKBIEO00221 500 aa17.92■□□□□ 0.46
NUP54-216ENST00000514901 GNAI3P08754 354 aa17.92■□□□□ 0.46
NUP54-216ENST00000514901 UBTFL1P0CB47 393 aaPredicted RBP17.92■□□□□ 0.46
NUP54-216ENST00000514901 LMNB1P20700 586 aa17.92■□□□□ 0.46
NUP54-216ENST00000514901 ITGA6P23229 1130 aa17.92■□□□□ 0.46
NUP54-216ENST00000514901 FKBP4Q02790 459 aaKnown RBP eCLIP17.92■□□□□ 0.46
NUP54-216ENST00000514901 IFIT5Q13325 482 aaKnown RBP17.92■□□□□ 0.46
NUP54-216ENST00000514901 LMBR1LQ6UX01 489 aa17.92■□□□□ 0.46
NUP54-216ENST00000514901 PSMD1Q99460 953 aa17.92■□□□□ 0.46
NUP54-216ENST00000514901 IGHMBP2P38935 993 aaKnown RBP17.91■□□□□ 0.46
NUP54-216ENST00000514901 CCDC57Q2TAC2 916 aa17.91■□□□□ 0.46
NUP54-216ENST00000514901 RABL6Q3YEC7 729 aaPredicted RBP17.91■□□□□ 0.46
NUP54-216ENST00000514901 EPHA10Q5JZY3 1008 aa17.91■□□□□ 0.46
NUP54-216ENST00000514901 TMEM57Q8N5G2 664 aa17.91■□□□□ 0.46
NUP54-216ENST00000514901 KAZALD1Q96I82 304 aa17.91■□□□□ 0.46
NUP54-216ENST00000514901 BSDC1Q9NW68 430 aaPredicted RBP17.91■□□□□ 0.46
NUP54-216ENST00000514901 CHMP3Q9Y3E7 222 aa17.91■□□□□ 0.46
NUP54-216ENST00000514901 RASSF7Q02833 373 aa17.9■□□□□ 0.46
NUP54-216ENST00000514901 FAM161AQ3B820 660 aa17.9■□□□□ 0.46
NUP54-216ENST00000514901 OLFM4Q6UX06 510 aa17.9■□□□□ 0.46
NUP54-216ENST00000514901 MPNDQ8N594 471 aa17.9■□□□□ 0.46
NUP54-216ENST00000514901 SUPT20HQ8NEM7 779 aa17.9■□□□□ 0.46
NUP54-216ENST00000514901 VPS33BQ9H267 617 aa17.9■□□□□ 0.46
NUP54-216ENST00000514901 BICC1Q9H694 974 aaKnown RBP17.9■□□□□ 0.46
NUP54-216ENST00000514901 TNNQ9UQP3 1299 aa17.9■□□□□ 0.46
NUP54-216ENST00000514901 FER1L6Q2WGJ9 1857 aa17.9■□□□□ 0.46
NUP54-216ENST00000514901 YY1P25490 414 aa17.89■□□□□ 0.45
NUP54-216ENST00000514901 C9orf131Q5VYM1 1079 aa17.89■□□□□ 0.45
NUP54-216ENST00000514901 DPP8Q6V1X1 898 aaPredicted RBP17.89■□□□□ 0.45
NUP54-216ENST00000514901 MPHOSPH8Q99549 860 aa17.89■□□□□ 0.45
NUP54-216ENST00000514901 TAF1P21675 1872 aa17.88■□□□□ 0.45
NUP54-216ENST00000514901 MEIS3Q99687 375 aa17.88■□□□□ 0.45
NUP54-216ENST00000514901 RTFDC1Q9BY42 306 aaPredicted RBP17.88■□□□□ 0.45
NUP54-216ENST00000514901 RNF181Q9P0P0 153 aa17.88■□□□□ 0.45
NUP54-216ENST00000514901 RLBP1P12271 317 aa17.87■□□□□ 0.45
NUP54-216ENST00000514901 PDE3AQ14432 1141 aa17.87■□□□□ 0.45
NUP54-216ENST00000514901 TAF7LQ5H9L4 462 aa17.87■□□□□ 0.45
NUP54-216ENST00000514901 ITPRIPQ8IWB1 547 aa17.87■□□□□ 0.45
NUP54-216ENST00000514901 ANKRD44Q8N8A2 993 aa17.87■□□□□ 0.45
NUP54-216ENST00000514901 NSFL1CQ9UNZ2 370 aaKnown RBP17.87■□□□□ 0.45
NUP54-216ENST00000514901 ZC3H4Q9UPT8 1303 aaKnown RBP17.87■□□□□ 0.45
NUP54-216ENST00000514901 SNED1Q8TER0 1413 aa17.87■□□□□ 0.45
NUP54-216ENST00000514901 SBF1O95248 1867 aa17.86■□□□□ 0.45
NUP54-216ENST00000514901 GNAI2P04899 355 aa17.86■□□□□ 0.45
NUP54-216ENST00000514901 CHMP4BQ9H444 224 aaKnown RBP17.86■□□□□ 0.45
NUP54-216ENST00000514901 PODXL2Q9NZ53 605 aa17.86■□□□□ 0.45
NUP54-216ENST00000514901 ANKIB1Q9P2G1 1089 aa17.86■□□□□ 0.45
NUP54-216ENST00000514901 LRRFIP2Q9Y608 721 aaKnown RBP17.86■□□□□ 0.45
NUP54-216ENST00000514901 PLIN1O60240 522 aa17.85■□□□□ 0.45
NUP54-216ENST00000514901 IARSP41252 1262 aaKnown RBP17.85■□□□□ 0.45
NUP54-216ENST00000514901 PANK1Q8TE04 598 aa17.85■□□□□ 0.45
NUP54-216ENST00000514901 ANKRD2Q9GZV1 360 aa17.85■□□□□ 0.45
NUP54-216ENST00000514901 ZNF277Q9NRM2 450 aaPredicted RBP17.85■□□□□ 0.45
NUP54-216ENST00000514901 MINPP1Q9UNW1 487 aa17.85■□□□□ 0.45
NUP54-216ENST00000514901 XDHP47989 1333 aa17.84■□□□□ 0.45
NUP54-216ENST00000514901 ZBTB7BO15156 539 aaPredicted RBP17.84■□□□□ 0.45
NUP54-216ENST00000514901 PRELPP51888 382 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 193.6 ms