RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 NDUFB9Q9Y6M9 179 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 RFX7Q2KHR2 1363 aa9.84□□□□□ -0.83
CPNE4-211ENST00000514439 JCADQ9P266 1359 aa9.84□□□□□ -0.83
CPNE4-211ENST00000514439 COL14A1Q05707 1796 aaKnown RBP9.84□□□□□ -0.83
CPNE4-211ENST00000514439 SLC27A2O14975 620 aa9.84□□□□□ -0.83
CPNE4-211ENST00000514439 TCIRG1Q13488 830 aa9.84□□□□□ -0.83
CPNE4-211ENST00000514439 DNAJC2Q99543 621 aaKnown RBP9.84□□□□□ -0.83
CPNE4-211ENST00000514439 HAUS7Q99871 368 aa9.84□□□□□ -0.83
CPNE4-211ENST00000514439 TEX13AQ9BXU3 409 aaPredicted RBP9.84□□□□□ -0.83
CPNE4-211ENST00000514439 RPAP1Q9BWH6 1393 aaPredicted RBP9.84□□□□□ -0.83
CPNE4-211ENST00000514439 LARGE1O95461 756 aa9.84□□□□□ -0.83
CPNE4-211ENST00000514439 IL15P40933 162 aaPredicted RBP9.84□□□□□ -0.83
CPNE4-211ENST00000514439 ZNF594Q96JF6 807 aaPredicted RBP9.84□□□□□ -0.83
CPNE4-211ENST00000514439 EYA2O00167 538 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 NCLP19338 710 aaKnown RBP9.83□□□□□ -0.84
CPNE4-211ENST00000514439 LRRC24Q50LG9 513 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 CAVIN1Q6NZI2 390 aaKnown RBP9.83□□□□□ -0.84
CPNE4-211ENST00000514439 KIF6Q6ZMV9 814 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 GPT2Q8TD30 523 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 GPR108Q9NPR9 543 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 CCDC9Q9Y3X0 531 aaKnown RBP9.83□□□□□ -0.84
CPNE4-211ENST00000514439 WDR33Q9C0J8 1336 aaKnown RBP9.83□□□□□ -0.84
CPNE4-211ENST00000514439 ROBO1Q9Y6N7 1651 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 BCL9O00512 1426 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 ZNF609O15014 1411 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 COL16A1Q07092 1604 aaPredicted RBP9.83□□□□□ -0.84
CPNE4-211ENST00000514439 TAF5LO75529 589 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 STARD3NLO95772 234 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 C1QBPQ07021 282 aaKnown RBP9.83□□□□□ -0.84
CPNE4-211ENST00000514439 RNF20Q5VTR2 975 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 DDX46Q7L014 1031 aaKnown RBP9.83□□□□□ -0.84
CPNE4-211ENST00000514439 NEUROD6Q96NK8 337 aa9.83□□□□□ -0.84
CPNE4-211ENST00000514439 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.83□□□□□ -0.84
CPNE4-211ENST00000514439 CHGBP05060 677 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 PSMA5P28066 241 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 TRIM28Q13263 835 aaKnown RBP9.82□□□□□ -0.84
CPNE4-211ENST00000514439 COL9A3Q14050 684 aaPredicted RBP9.82□□□□□ -0.84
CPNE4-211ENST00000514439 SH2B1Q9NRF2 756 aaPredicted RBP9.82□□□□□ -0.84
CPNE4-211ENST00000514439 TAF6LQ9Y6J9 622 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 AHDC1Q5TGY3 1603 aaPredicted RBP9.82□□□□□ -0.84
CPNE4-211ENST00000514439 CIAO1O76071 339 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 TIMM10P62072 90 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 CCDC83Q8IWF9 413 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 KBTBD3Q8NAB2 608 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 SLC4A9Q96Q91 983 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 PUS3Q9BZE2 481 aaKnown RBP9.82□□□□□ -0.84
CPNE4-211ENST00000514439 SMC3Q9UQE7 1217 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 ITGB4P16144 1822 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 MAP3K15Q6ZN16 1313 aa9.82□□□□□ -0.84
CPNE4-211ENST00000514439 PLCH1Q4KWH8 1693 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 PCCAP05165 728 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 ZSCAN23Q3MJ62 389 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 USPL1Q5W0Q7 1092 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 CCDC129Q6ZRS4 1044 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 FAM89AQ96GI7 184 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 ZSCAN31Q96LW9 406 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 SEC62Q99442 399 aaKnown RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 HMG20BQ9P0W2 317 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 LRP6O75581 1613 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 COL22A1Q8NFW1 1626 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 PALLDQ8WX93 1383 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 GOLIM4O00461 696 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 EXOC5O00471 708 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 CYP19A1P11511 503 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 SYT1P21579 422 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 ZNF445P59923 1031 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 ST3GAL1Q11201 340 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 ME3Q16798 604 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 CCDC57Q2TAC2 916 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 FOXD4L6Q3SYB3 417 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 BLOC1S2Q6QNY1 142 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 FOXD4L3Q6VB84 417 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 GIGYF2Q6Y7W6 1299 aaKnown RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 ZBTB38Q8NAP3 1195 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 SYTL4Q96C24 671 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 PAG1Q9NWQ8 432 aa9.81□□□□□ -0.84
CPNE4-211ENST00000514439 RBM27Q9P2N5 1060 aaKnown RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 NSFL1CQ9UNZ2 370 aaKnown RBP9.81□□□□□ -0.84
CPNE4-211ENST00000514439 A0A1B0GUL7 405 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 STX6O43752 255 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 RPS6KB1P23443 525 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 HLFQ16534 295 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 TSGA10IPQ3SY00 556 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 MCMDC2Q4G0Z9 681 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 CCDC85AQ96PX6 553 aaPredicted RBP9.8□□□□□ -0.84
CPNE4-211ENST00000514439 PLA2G12BQ9BX93 195 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 TPCN1Q9ULQ1 816 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 ZBTB1Q9Y2K1 713 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 SH3TC1Q8TE82 1336 aa9.8□□□□□ -0.84
CPNE4-211ENST00000514439 MBD3O95983 291 aa9.79□□□□□ -0.84
CPNE4-211ENST00000514439 ZSCAN22P10073 491 aaPredicted RBP9.79□□□□□ -0.84
CPNE4-211ENST00000514439 GJB2P29033 226 aa9.79□□□□□ -0.84
CPNE4-211ENST00000514439 TCEANC2Q96MN5 208 aa9.79□□□□□ -0.84
CPNE4-211ENST00000514439 CEP126Q9P2H0 1117 aa9.79□□□□□ -0.84
CPNE4-211ENST00000514439 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.79□□□□□ -0.84
CPNE4-211ENST00000514439 DTNBO60941 627 aa9.79□□□□□ -0.84
CPNE4-211ENST00000514439 CSF1RP07333 972 aa9.79□□□□□ -0.84
CPNE4-211ENST00000514439 GPTP24298 496 aa9.79□□□□□ -0.84
CPNE4-211ENST00000514439 NLRP10Q86W26 655 aa9.79□□□□□ -0.84
CPNE4-211ENST00000514439 SYNE4Q8N205 404 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms