RNA–Protein interactions for RNA: ENST00000512293.1

PDLIM3-207, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 581 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-207ENST00000512293 GRAPLQ8TC17 118 aaPredicted RBP22.91■■□□□ 1.26
PDLIM3-207ENST00000512293 XAGE3Q8WTP9 111 aa22.91■■□□□ 1.26
PDLIM3-207ENST00000512293 ZC3H15Q8WU90 426 aaKnown RBP22.91■■□□□ 1.26
PDLIM3-207ENST00000512293 LRRC37AA6NMS7 1700 aa22.91■■□□□ 1.26
PDLIM3-207ENST00000512293 CHL1O00533 1208 aa22.9■■□□□ 1.26
PDLIM3-207ENST00000512293 TNIP1Q15025 636 aa22.9■■□□□ 1.26
PDLIM3-207ENST00000512293 CIAPIN1Q6FI81 312 aa22.9■■□□□ 1.26
PDLIM3-207ENST00000512293 HHIPL1Q96JK4 782 aa22.9■■□□□ 1.26
PDLIM3-207ENST00000512293 GPR101Q96P66 508 aaPredicted RBP22.9■■□□□ 1.26
PDLIM3-207ENST00000512293 TRMT112Q9UI30 125 aaKnown RBP22.9■■□□□ 1.26
PDLIM3-207ENST00000512293 TRAF5O00463 557 aa22.89■■□□□ 1.25
PDLIM3-207ENST00000512293 HCLS1P14317 486 aaPredicted RBP22.89■■□□□ 1.25
PDLIM3-207ENST00000512293 MAP2K2P36507 400 aa22.89■■□□□ 1.25
PDLIM3-207ENST00000512293 GMPSP49915 693 aaPredicted RBP22.89■■□□□ 1.25
PDLIM3-207ENST00000512293 HOXB7P09629 217 aa22.88■■□□□ 1.25
PDLIM3-207ENST00000512293 AIMP1Q12904 312 aaKnown RBP22.88■■□□□ 1.25
PDLIM3-207ENST00000512293 BEGAINQ9BUH8 593 aa22.88■■□□□ 1.25
PDLIM3-207ENST00000512293 CYP4F22Q6NT55 531 aa22.87■■□□□ 1.25
PDLIM3-207ENST00000512293 SAPCD2Q86UD0 394 aa22.87■■□□□ 1.25
PDLIM3-207ENST00000512293 DUOX1Q9NRD9 1551 aa22.87■■□□□ 1.25
PDLIM3-207ENST00000512293 DDX60Q8IY21 1712 aaKnown RBP22.87■■□□□ 1.25
PDLIM3-207ENST00000512293 TAF1P21675 1872 aa22.87■■□□□ 1.25
PDLIM3-207ENST00000512293 PAXIP1Q6ZW49 1069 aaPredicted RBP22.85■■□□□ 1.25
PDLIM3-207ENST00000512293 PLBD2Q8NHP8 589 aa22.85■■□□□ 1.25
PDLIM3-207ENST00000512293 NECTIN2Q92692 538 aa22.85■■□□□ 1.25
PDLIM3-207ENST00000512293 ABHD8Q96I13 439 aa22.85■■□□□ 1.25
PDLIM3-207ENST00000512293 SF3B3Q15393 1217 aaKnown RBP22.84■■□□□ 1.25
PDLIM3-207ENST00000512293 ISCA1Q9BUE6 129 aa22.84■■□□□ 1.25
PDLIM3-207ENST00000512293 BCL2L13Q9BXK5 485 aa22.84■■□□□ 1.25
PDLIM3-207ENST00000512293 YDJCA8MPS7 323 aa22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 CA12O43570 354 aa22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 RAD17O75943 681 aa22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 CELF2O95319 508 aaKnown RBP22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 HIRAP54198 1017 aaPredicted RBP22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 CDC37L1Q7L3B6 337 aa22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 DPF2Q92785 391 aa22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 GLIS2Q9BZE0 524 aaPredicted RBP22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 CHPF2Q9P2E5 772 aa22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 TRIM35Q9UPQ4 493 aa22.83■■□□□ 1.25
PDLIM3-207ENST00000512293 KRT24Q2M2I5 525 aa22.82■■□□□ 1.24
PDLIM3-207ENST00000512293 ANKRD13DQ6ZTN6 518 aa22.82■■□□□ 1.24
PDLIM3-207ENST00000512293 DBF4Q9UBU7 674 aaPredicted RBP22.82■■□□□ 1.24
PDLIM3-207ENST00000512293 CNOT7Q9UIV1 285 aaKnown RBP22.82■■□□□ 1.24
PDLIM3-207ENST00000512293 MYBBP1AQ9BQG0 1328 aaKnown RBP22.82■■□□□ 1.24
PDLIM3-207ENST00000512293 H7C1D1 291 aa22.81■■□□□ 1.24
PDLIM3-207ENST00000512293 TRIM28Q13263 835 aaKnown RBP22.81■■□□□ 1.24
PDLIM3-207ENST00000512293 HDGFL1Q5TGJ6 251 aa22.81■■□□□ 1.24
PDLIM3-207ENST00000512293 RUNDC1Q96C34 613 aa22.81■■□□□ 1.24
PDLIM3-207ENST00000512293 BRPF1P55201 1214 aaPredicted RBP22.8■■□□□ 1.24
PDLIM3-207ENST00000512293 TRPM4Q8TD43 1214 aa22.8■■□□□ 1.24
PDLIM3-207ENST00000512293 AOC2O75106 756 aa22.79■■□□□ 1.24
PDLIM3-207ENST00000512293 GRM1Q13255 1194 aa22.79■■□□□ 1.24
PDLIM3-207ENST00000512293 NEUROD2Q15784 382 aa22.79■■□□□ 1.24
PDLIM3-207ENST00000512293 WASHC4Q2M389 1173 aa22.79■■□□□ 1.24
PDLIM3-207ENST00000512293 HYPKQ9NX55 129 aa22.79■■□□□ 1.24
PDLIM3-207ENST00000512293 MICALL2Q8IY33 904 aa22.78■■□□□ 1.24
PDLIM3-207ENST00000512293 CCDC146Q8IYE0 955 aa22.78■■□□□ 1.24
PDLIM3-207ENST00000512293 CELF1Q92879 486 aaKnown RBP22.78■■□□□ 1.24
PDLIM3-207ENST00000512293 FAM89AQ96GI7 184 aa22.78■■□□□ 1.24
PDLIM3-207ENST00000512293 CFAP44Q96MT7 982 aa22.78■■□□□ 1.24
PDLIM3-207ENST00000512293 RPS12P25398 132 aaKnown RBP22.77■■□□□ 1.24
PDLIM3-207ENST00000512293 NSFL1CQ9UNZ2 370 aaKnown RBP22.77■■□□□ 1.24
PDLIM3-207ENST00000512293 POLLQ9UGP5 575 aa22.76■■□□□ 1.23
PDLIM3-207ENST00000512293 LAS1LQ9Y4W2 734 aaKnown RBP22.76■■□□□ 1.23
PDLIM3-207ENST00000512293 PSMD14O00487 310 aa22.75■■□□□ 1.23
PDLIM3-207ENST00000512293 EYA3Q99504 573 aa22.75■■□□□ 1.23
PDLIM3-207ENST00000512293 SHTN1A0MZ66 631 aa22.74■■□□□ 1.23
PDLIM3-207ENST00000512293 ATP5J2-PTCD1G3V325 749 aa22.74■■□□□ 1.23
PDLIM3-207ENST00000512293 NOGQ13253 232 aa22.74■■□□□ 1.23
PDLIM3-207ENST00000512293 WDR43Q15061 677 aaKnown RBP eCLIP22.74■■□□□ 1.23
PDLIM3-207ENST00000512293 ZBTB12Q9Y330 459 aaPredicted RBP22.74■■□□□ 1.23
PDLIM3-207ENST00000512293 POLR2AP24928 1970 aaKnown RBP22.74■■□□□ 1.23
PDLIM3-207ENST00000512293 IRS4O14654 1257 aaPredicted RBP22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 HSP90B1P14625 803 aaKnown RBP22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 RGS19P49795 217 aa22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 RPS8P62241 208 aaKnown RBP22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 GPSM2P81274 684 aa22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 DUSP27Q5VZP5 1158 aa22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 USP48Q86UV5 1035 aa22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 ZNF408Q9H9D4 720 aa22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 DBNDD1Q9H9R9 158 aa22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 PODXL2Q9NZ53 605 aa22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 COL4A1P02462 1669 aa22.73■■□□□ 1.23
PDLIM3-207ENST00000512293 C6orf229H3BNL8 230 aa22.72■■□□□ 1.23
PDLIM3-207ENST00000512293 SAMD7Q7Z3H4 446 aa22.72■■□□□ 1.23
PDLIM3-207ENST00000512293 TBC1D16Q8TBP0 767 aa22.72■■□□□ 1.23
PDLIM3-207ENST00000512293 ADAMTS8Q9UP79 889 aa22.72■■□□□ 1.23
PDLIM3-207ENST00000512293 ECE2O60344 883 aa22.71■■□□□ 1.23
PDLIM3-207ENST00000512293 ZNF853P0CG23 659 aa22.71■■□□□ 1.23
PDLIM3-207ENST00000512293 ZBTB38Q8NAP3 1195 aaPredicted RBP22.71■■□□□ 1.23
PDLIM3-207ENST00000512293 TSKSQ9UJT2 592 aa22.71■■□□□ 1.23
PDLIM3-207ENST00000512293 RTL9Q8NET4 1388 aa22.71■■□□□ 1.23
PDLIM3-207ENST00000512293 ZNF609O15014 1411 aa22.71■■□□□ 1.23
PDLIM3-207ENST00000512293 CASP8AP2Q9UKL3 1982 aa22.7■■□□□ 1.23
PDLIM3-207ENST00000512293 RIMBP2O15034 1052 aa22.7■■□□□ 1.22
PDLIM3-207ENST00000512293 HUNKP57058 714 aa22.7■■□□□ 1.22
PDLIM3-207ENST00000512293 KRT26Q7Z3Y9 468 aa22.7■■□□□ 1.22
PDLIM3-207ENST00000512293 MBIPQ9NS73 344 aa22.7■■□□□ 1.22
PDLIM3-207ENST00000512293 SCN9AQ15858 1988 aa22.69■■□□□ 1.22
PDLIM3-207ENST00000512293 VIL1P09327 827 aaKnown RBP22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms