RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 RBM17Q96I25 401 aaKnown RBP12.38□□□□□ -0.43
NUP54-211ENST00000512151 RTFDC1Q9BY42 306 aaPredicted RBP12.38□□□□□ -0.43
NUP54-211ENST00000512151 ZBTB12Q9Y330 459 aaPredicted RBP12.38□□□□□ -0.43
NUP54-211ENST00000512151 CEMIPQ8WUJ3 1361 aa12.37□□□□□ -0.43
NUP54-211ENST00000512151 BTBD11A6QL63 1104 aa12.37□□□□□ -0.43
NUP54-211ENST00000512151 GNAT3A8MTJ3 354 aa12.37□□□□□ -0.43
NUP54-211ENST00000512151 TBC1D10BQ4KMP7 808 aaPredicted RBP12.37□□□□□ -0.43
NUP54-211ENST00000512151 VPS33BQ9H267 617 aa12.37□□□□□ -0.43
NUP54-211ENST00000512151 ATP6V0A2Q9Y487 856 aa12.37□□□□□ -0.43
NUP54-211ENST00000512151 UBN2Q6ZU65 1347 aa12.37□□□□□ -0.43
NUP54-211ENST00000512151 H7C1D1 291 aa12.36□□□□□ -0.43
NUP54-211ENST00000512151 KIAA2012Q0VF49 1180 aa12.36□□□□□ -0.43
NUP54-211ENST00000512151 TNIP1Q15025 636 aa12.36□□□□□ -0.43
NUP54-211ENST00000512151 COLQQ9Y215 455 aaPredicted RBP12.36□□□□□ -0.43
NUP54-211ENST00000512151 KIAA0100Q14667 2235 aaKnown RBP12.36□□□□□ -0.43
NUP54-211ENST00000512151 ASTN2O75129 1339 aaPredicted RBP12.36□□□□□ -0.43
NUP54-211ENST00000512151 NUP98P52948 1817 aa12.35□□□□□ -0.43
NUP54-211ENST00000512151 MKI67P46013 3256 aaKnown RBP12.35□□□□□ -0.43
NUP54-211ENST00000512151 SUSD4Q5VX71 490 aa12.35□□□□□ -0.43
NUP54-211ENST00000512151 NYXQ9GZU5 481 aa12.35□□□□□ -0.43
NUP54-211ENST00000512151 R3HDMLQ9H3Y0 253 aa12.35□□□□□ -0.43
NUP54-211ENST00000512151 GPR25O00155 361 aa12.34□□□□□ -0.43
NUP54-211ENST00000512151 SNRPA1P09661 255 aaKnown RBP12.34□□□□□ -0.43
NUP54-211ENST00000512151 GPTP24298 496 aa12.34□□□□□ -0.43
NUP54-211ENST00000512151 RBM26Q5T8P6 1007 aaKnown RBP12.34□□□□□ -0.43
NUP54-211ENST00000512151 PAPPA2Q9BXP8 1791 aa12.34□□□□□ -0.43
NUP54-211ENST00000512151 CEP290O15078 2479 aa12.33□□□□□ -0.43
NUP54-211ENST00000512151 DUOX1Q9NRD9 1551 aa12.33□□□□□ -0.44
NUP54-211ENST00000512151 CUL9Q8IWT3 2517 aa12.33□□□□□ -0.44
NUP54-211ENST00000512151 PSMD14O00487 310 aa12.33□□□□□ -0.44
NUP54-211ENST00000512151 DPP8Q6V1X1 898 aaPredicted RBP12.33□□□□□ -0.44
NUP54-211ENST00000512151 MOB2Q70IA6 237 aa12.33□□□□□ -0.44
NUP54-211ENST00000512151 SUPT20HQ8NEM7 779 aa12.33□□□□□ -0.44
NUP54-211ENST00000512151 CDCA5Q96FF9 252 aa12.33□□□□□ -0.44
NUP54-211ENST00000512151 ABCC4O15439 1325 aa12.33□□□□□ -0.44
NUP54-211ENST00000512151 HAX1O00165 279 aa12.32□□□□□ -0.44
NUP54-211ENST00000512151 NTSR2O95665 410 aa12.32□□□□□ -0.44
NUP54-211ENST00000512151 TTLL7Q6ZT98 887 aa12.32□□□□□ -0.44
NUP54-211ENST00000512151 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
NUP54-211ENST00000512151 NGEFQ8N5V2 710 aa12.32□□□□□ -0.44
NUP54-211ENST00000512151 DPF2Q92785 391 aa12.32□□□□□ -0.44
NUP54-211ENST00000512151 DCPSQ96C86 337 aaKnown RBP12.32□□□□□ -0.44
NUP54-211ENST00000512151 IBTKQ9P2D0 1353 aaPredicted RBP12.32□□□□□ -0.44
NUP54-211ENST00000512151 SZT2Q5T011 3432 aa12.32□□□□□ -0.44
NUP54-211ENST00000512151 DIAPH1O60610 1272 aaKnown RBP12.31□□□□□ -0.44
NUP54-211ENST00000512151 MPNDQ8N594 471 aa12.31□□□□□ -0.44
NUP54-211ENST00000512151 GAS2L2Q8NHY3 880 aa12.31□□□□□ -0.44
NUP54-211ENST00000512151 KCNQ5Q9NR82 932 aa12.31□□□□□ -0.44
NUP54-211ENST00000512151 GGA3Q9NZ52 723 aa12.31□□□□□ -0.44
NUP54-211ENST00000512151 ERVV-1B6SEH8 477 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 EN2P19622 333 aaPredicted RBP12.3□□□□□ -0.44
NUP54-211ENST00000512151 KCNA4P22459 653 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 NOM1Q5C9Z4 860 aaKnown RBP12.3□□□□□ -0.44
NUP54-211ENST00000512151 AMER1Q5JTC6 1135 aaPredicted RBP12.3□□□□□ -0.44
NUP54-211ENST00000512151 SP8Q8IXZ3 490 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 ZNF34Q8IZ26 560 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 PHACTR3Q96KR7 559 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 MAP3K15Q6ZN16 1313 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 RBBP6Q7Z6E9 1792 aaKnown RBP12.3□□□□□ -0.44
NUP54-211ENST00000512151 FKTNO75072 461 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 COL3A1P02461 1466 aaPredicted RBP12.3□□□□□ -0.44
NUP54-211ENST00000512151 TAF1P21675 1872 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 SLC17A8Q8NDX2 589 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 RTL9Q8NET4 1388 aa12.3□□□□□ -0.44
NUP54-211ENST00000512151 LAMB2P55268 1798 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 HTTP42858 3142 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 UBE2Q2LH0YL09 131 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 TM4SF4P48230 202 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 KIF4BQ2VIQ3 1234 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 SULF1Q8IWU6 871 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 OTUD5Q96G74 571 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 TMX4Q9H1E5 349 aaPredicted RBP12.29□□□□□ -0.44
NUP54-211ENST00000512151 ZBTB3Q9H5J0 574 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 DBNDD1Q9H9R9 158 aa12.29□□□□□ -0.44
NUP54-211ENST00000512151 MKRN3Q13064 507 aaKnown RBP12.28□□□□□ -0.44
NUP54-211ENST00000512151 MCM10Q7L590 875 aa12.28□□□□□ -0.44
NUP54-211ENST00000512151 NLRP3Q96P20 1036 aa12.28□□□□□ -0.44
NUP54-211ENST00000512151 SCAF8Q9UPN6 1271 aaKnown RBP12.28□□□□□ -0.44
NUP54-211ENST00000512151 LAMB4A4D0S4 1761 aa12.27□□□□□ -0.45
NUP54-211ENST00000512151 BBOX1O75936 387 aa12.27□□□□□ -0.45
NUP54-211ENST00000512151 SLC10A5Q5PT55 438 aa12.27□□□□□ -0.45
NUP54-211ENST00000512151 OTOP1Q7RTM1 612 aa12.27□□□□□ -0.45
NUP54-211ENST00000512151 KNSTRNQ9Y448 316 aa12.27□□□□□ -0.45
NUP54-211ENST00000512151 SCN9AQ15858 1988 aa12.27□□□□□ -0.45
NUP54-211ENST00000512151 H0YGN5 161 aa12.26□□□□□ -0.45
NUP54-211ENST00000512151 U2SURPO15042 1029 aaKnown RBP12.26□□□□□ -0.45
NUP54-211ENST00000512151 RPS12P25398 132 aaKnown RBP12.26□□□□□ -0.45
NUP54-211ENST00000512151 ANGEL2Q5VTE6 544 aaKnown RBP12.26□□□□□ -0.45
NUP54-211ENST00000512151 CFHR5Q9BXR6 569 aa12.26□□□□□ -0.45
NUP54-211ENST00000512151 TRIM17Q9Y577 477 aa12.26□□□□□ -0.45
NUP54-211ENST00000512151 RIMBP2O15034 1052 aa12.25□□□□□ -0.45
NUP54-211ENST00000512151 FKBP1BP68106 108 aa12.25□□□□□ -0.45
NUP54-211ENST00000512151 SCARF1Q14162 830 aa12.25□□□□□ -0.45
NUP54-211ENST00000512151 DCTN1Q14203 1278 aa12.25□□□□□ -0.45
NUP54-211ENST00000512151 DOK7Q18PE1 504 aa12.25□□□□□ -0.45
NUP54-211ENST00000512151 PRAMEF18Q5VWM3 479 aa12.25□□□□□ -0.45
NUP54-211ENST00000512151 INTS3Q68E01 1043 aaKnown RBP12.25□□□□□ -0.45
NUP54-211ENST00000512151 MIS18AQ9NYP9 233 aa12.25□□□□□ -0.45
NUP54-211ENST00000512151 RRP7AQ9Y3A4 280 aaKnown RBP12.25□□□□□ -0.45
NUP54-211ENST00000512151 LRRC37AA6NMS7 1700 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms