RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 GRIK5Q16478 980 aa13.88□□□□□ -0.19
USP53-206ENST00000510737 SHISA2Q6UWI4 295 aa13.88□□□□□ -0.19
USP53-206ENST00000510737 PRIMPOLQ96LW4 560 aa13.88□□□□□ -0.19
USP53-206ENST00000510737 CPB1P15086 417 aa13.87□□□□□ -0.19
USP53-206ENST00000510737 EPB42P16452 691 aa13.87□□□□□ -0.19
USP53-206ENST00000510737 FAM35AQ86V20 835 aa13.87□□□□□ -0.19
USP53-206ENST00000510737 LPIN3Q9BQK8 851 aa13.87□□□□□ -0.19
USP53-206ENST00000510737 MLLT1Q03111 559 aaPredicted RBP13.86□□□□□ -0.19
USP53-206ENST00000510737 FAM69CQ0P6D2 419 aa13.86□□□□□ -0.19
USP53-206ENST00000510737 COX20Q5RI15 118 aa13.86□□□□□ -0.19
USP53-206ENST00000510737 DHX32Q7L7V1 743 aaKnown RBP13.86□□□□□ -0.19
USP53-206ENST00000510737 DMRTC2Q8IXT2 367 aaPredicted RBP13.86□□□□□ -0.19
USP53-206ENST00000510737 RGS9O75916 674 aaPredicted RBP13.85□□□□□ -0.19
USP53-206ENST00000510737 ELNP15502 786 aa13.85□□□□□ -0.19
USP53-206ENST00000510737 SRPK2P78362 688 aaKnown RBP13.85□□□□□ -0.19
USP53-206ENST00000510737 ADGRE1Q14246 886 aa13.85□□□□□ -0.19
USP53-206ENST00000510737 OCLNQ16625 522 aa13.85□□□□□ -0.19
USP53-206ENST00000510737 PERM1Q5SV97 790 aa13.85□□□□□ -0.19
USP53-206ENST00000510737 TRPM4Q8TD43 1214 aa13.85□□□□□ -0.19
USP53-206ENST00000510737 VTI1AQ96AJ9 217 aa13.85□□□□□ -0.19
USP53-206ENST00000510737 NACC1Q96RE7 527 aa13.85□□□□□ -0.19
USP53-206ENST00000510737 MBTPS1Q14703 1052 aa13.84□□□□□ -0.19
USP53-206ENST00000510737 FOXD4L6Q3SYB3 417 aaPredicted RBP13.84□□□□□ -0.19
USP53-206ENST00000510737 FOXD4L3Q6VB84 417 aaPredicted RBP13.84□□□□□ -0.19
USP53-206ENST00000510737 STK32AQ8WU08 396 aa13.84□□□□□ -0.19
USP53-206ENST00000510737 RTCBQ9Y3I0 505 aaKnown RBP13.84□□□□□ -0.19
USP53-206ENST00000510737 FAM26DQ5JW98 314 aa13.83□□□□□ -0.2
USP53-206ENST00000510737 FMR1NBQ8N0W7 255 aaPredicted RBP13.83□□□□□ -0.2
USP53-206ENST00000510737 SAP130Q9H0E3 1048 aa13.83□□□□□ -0.2
USP53-206ENST00000510737 DYRK3O43781 588 aa13.82□□□□□ -0.2
USP53-206ENST00000510737 PRMT3O60678 531 aa13.82□□□□□ -0.2
USP53-206ENST00000510737 RARAP10276 462 aa13.82□□□□□ -0.2
USP53-206ENST00000510737 TREML1Q86YW5 311 aa13.82□□□□□ -0.2
USP53-206ENST00000510737 C9orf172C9J069 976 aa13.81□□□□□ -0.2
USP53-206ENST00000510737 CAPN12Q6ZSI9 719 aa13.81□□□□□ -0.2
USP53-206ENST00000510737 LENG1Q96BZ8 264 aaPredicted RBP13.81□□□□□ -0.2
USP53-206ENST00000510737 C11orf16Q9NQ32 467 aa13.81□□□□□ -0.2
USP53-206ENST00000510737 ACIN1Q9UKV3 1341 aaKnown RBP13.81□□□□□ -0.2
USP53-206ENST00000510737 GPLD1P80108 840 aa13.8□□□□□ -0.2
USP53-206ENST00000510737 MSL1Q68DK7 614 aa13.8□□□□□ -0.2
USP53-206ENST00000510737 HFE2Q6ZVN8 426 aa13.8□□□□□ -0.2
USP53-206ENST00000510737 RGL4Q8IZJ4 473 aa13.8□□□□□ -0.2
USP53-206ENST00000510737 FRRS1LQ9P0K9 344 aa13.8□□□□□ -0.2
USP53-206ENST00000510737 KCNMB2Q9Y691 235 aa13.8□□□□□ -0.2
USP53-206ENST00000510737 EGFRP00533 1210 aa13.79□□□□□ -0.2
USP53-206ENST00000510737 RAC1P63000 192 aa13.79□□□□□ -0.2
USP53-206ENST00000510737 SWI5Q1ZZU3 235 aa13.79□□□□□ -0.2
USP53-206ENST00000510737 ETFBKMTQ8IXQ9 262 aa13.79□□□□□ -0.2
USP53-206ENST00000510737 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.78□□□□□ -0.2
USP53-206ENST00000510737 ELOAQ14241 798 aaKnown RBP13.78□□□□□ -0.2
USP53-206ENST00000510737 XYLBO75191 536 aa13.77□□□□□ -0.21
USP53-206ENST00000510737 CMTR1Q8N1G2 835 aaKnown RBP13.77□□□□□ -0.21
USP53-206ENST00000510737 PCSK7Q16549 785 aa13.76□□□□□ -0.21
USP53-206ENST00000510737 TXNRD3Q86VQ6 643 aa13.76□□□□□ -0.21
USP53-206ENST00000510737 TLR7Q9NYK1 1049 aaKnown RBP13.76□□□□□ -0.21
USP53-206ENST00000510737 ZMYM1Q5SVZ6 1142 aa13.75□□□□□ -0.21
USP53-206ENST00000510737 ELMSAN1Q6PJG2 1045 aa13.75□□□□□ -0.21
USP53-206ENST00000510737 NRLP54845 237 aa13.74□□□□□ -0.21
USP53-206ENST00000510737 TTC9Q92623 222 aa13.74□□□□□ -0.21
USP53-206ENST00000510737 SMG9Q9H0W8 520 aaKnown RBP13.74□□□□□ -0.21
USP53-206ENST00000510737 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.74□□□□□ -0.219e-7■■■■■ 159.9
USP53-206ENST00000510737 J3QW42 95 aa13.73□□□□□ -0.21
USP53-206ENST00000510737 TNFRSF10BO14763 440 aa13.73□□□□□ -0.21
USP53-206ENST00000510737 MMP20O60882 483 aa13.73□□□□□ -0.21
USP53-206ENST00000510737 TRIP4Q15650 581 aaPredicted RBP13.73□□□□□ -0.21
USP53-206ENST00000510737 SSBP4Q9BWG4 385 aaPredicted RBP13.73□□□□□ -0.21
USP53-206ENST00000510737 DEAF1O75398 565 aaPredicted RBP13.72□□□□□ -0.21
USP53-206ENST00000510737 PRSS36Q5K4E3 855 aa13.72□□□□□ -0.21
USP53-206ENST00000510737 FBXO11Q86XK2 927 aa13.72□□□□□ -0.21
USP53-206ENST00000510737 MKNK1Q9BUB5 465 aa13.72□□□□□ -0.21
USP53-206ENST00000510737 SLAIN2Q9P270 581 aa13.72□□□□□ -0.21
USP53-206ENST00000510737 TMEM164Q5U3C3 297 aa13.71□□□□□ -0.21
USP53-206ENST00000510737 C16orf46Q6P387 395 aa13.71□□□□□ -0.21
USP53-206ENST00000510737 CXXC1Q9P0U4 656 aaPredicted RBP13.71□□□□□ -0.21
USP53-206ENST00000510737 EIF2AK2P19525 551 aaKnown RBP13.7□□□□□ -0.22
USP53-206ENST00000510737 NRG1Q02297 640 aaPredicted RBP13.7□□□□□ -0.22
USP53-206ENST00000510737 WFDC8Q8IUA0 241 aa13.7□□□□□ -0.22
USP53-206ENST00000510737 DTWD1Q8N5C7 304 aa13.7□□□□□ -0.22
USP53-206ENST00000510737 USP21Q9UK80 565 aa13.7□□□□□ -0.22
USP53-206ENST00000510737 ATG7O95352 703 aa13.69□□□□□ -0.22
USP53-206ENST00000510737 NSUN5Q96P11 429 aaKnown RBP13.69□□□□□ -0.22
USP53-206ENST00000510737 NAA30Q147X3 362 aaPredicted RBP13.68□□□□□ -0.22
USP53-206ENST00000510737 COL26A1Q96A83 441 aa13.68□□□□□ -0.22
USP53-206ENST00000510737 LOC102724428A0A0B4J2F2 783 aa13.67□□□□□ -0.22
USP53-206ENST00000510737 H2AFB1P0C5Y9 115 aa13.67□□□□□ -0.22
USP53-206ENST00000510737 H2AFB2P0C5Z0 115 aa13.67□□□□□ -0.22
USP53-206ENST00000510737 SIK1P57059 783 aa13.67□□□□□ -0.22
USP53-206ENST00000510737 PLD4Q96BZ4 506 aa13.67□□□□□ -0.22
USP53-206ENST00000510737 HOXD8P13378 290 aaPredicted RBP13.66□□□□□ -0.22
USP53-206ENST00000510737 TP53INP1Q96A56 240 aa13.66□□□□□ -0.22
USP53-206ENST00000510737 BRD2P25440 801 aaKnown RBP13.65□□□□□ -0.22
USP53-206ENST00000510737 NOS3P29474 1203 aa13.65□□□□□ -0.22
USP53-206ENST00000510737 WFDC12Q8WWY7 111 aa13.65□□□□□ -0.22
USP53-206ENST00000510737 ZBTB39O15060 712 aa13.64□□□□□ -0.23
USP53-206ENST00000510737 PSAPP07602 524 aa13.64□□□□□ -0.23
USP53-206ENST00000510737 DLL1O00548 723 aa13.63□□□□□ -0.23
USP53-206ENST00000510737 SOX18P35713 384 aa13.63□□□□□ -0.23
USP53-206ENST00000510737 IREB2P48200 963 aaKnown RBP13.63□□□□□ -0.23
USP53-206ENST00000510737 ARID4AP29374 1257 aaPredicted RBP13.62□□□□□ -0.23
USP53-206ENST00000510737 COL13A1Q5TAT6 717 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms