RNA–Protein interactions for RNA: ENST00000509828.1

MBD4-208, Transcript of methyl-CpG binding domain 4, DNA glycosylase, human

TSL 2

Gene MBD4, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD4-208	ENST00000509828	COL4A5	P29400	1685 aa		13.62	□□□□□ -0.23
MBD4-208	ENST00000509828	ABCC4	O15439	1325 aa		13.62	□□□□□ -0.23
MBD4-208	ENST00000509828	ERBB4	Q15303	1308 aa		13.62	□□□□□ -0.23
MBD4-208	ENST00000509828	HCLS1	P14317	486 aa	Predicted RBP	13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	KIAA2012	Q0VF49	1180 aa		13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	NOG	Q13253	232 aa		13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	NFE2L2	Q16236	605 aa		13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	HSP90AB3P	Q58FF7	597 aa		13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	SLC10A5	Q5PT55	438 aa		13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	TRMT112	Q9UI30	125 aa	Known RBP	13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	RIC1	Q4ADV7	1423 aa		13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	SNED1	Q8TER0	1413 aa		13.61	□□□□□ -0.23
MBD4-208	ENST00000509828	RBM26	Q5T8P6	1007 aa	Known RBP	13.6	□□□□□ -0.23
MBD4-208	ENST00000509828	MICALL2	Q8IY33	904 aa		13.6	□□□□□ -0.23
MBD4-208	ENST00000509828	C2orf69	Q8N8R5	385 aa		13.6	□□□□□ -0.23
MBD4-208	ENST00000509828	NECTIN2	Q92692	538 aa		13.6	□□□□□ -0.23
MBD4-208	ENST00000509828	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.6	□□□□□ -0.23
MBD4-208	ENST00000509828	PGAP2	Q9UHJ9	254 aa		13.6	□□□□□ -0.23
MBD4-208	ENST00000509828	CDHR2	Q9BYE9	1310 aa		13.6	□□□□□ -0.23
MBD4-208	ENST00000509828		G3V3G9	751 aa		13.59	□□□□□ -0.23
MBD4-208	ENST00000509828	GRAP	Q13588	217 aa		13.59	□□□□□ -0.23
MBD4-208	ENST00000509828	DCAF8	Q5TAQ9	597 aa		13.59	□□□□□ -0.23
MBD4-208	ENST00000509828	GRAPL	Q8TC17	118 aa	Predicted RBP	13.59	□□□□□ -0.23
MBD4-208	ENST00000509828	DCPS	Q96C86	337 aa	Known RBP	13.59	□□□□□ -0.23
MBD4-208	ENST00000509828	LTBP1	Q14766	1721 aa		13.59	□□□□□ -0.23
MBD4-208	ENST00000509828	C6orf229	H3BNL8	230 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	RIMBP2	O15034	1052 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	ANXA1	P04083	346 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	HIRA	P54198	1017 aa	Predicted RBP	13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	WASHC4	Q2M389	1173 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	COPS6	Q7L5N1	327 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	KRT26	Q7Z3Y9	468 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	TMC4	Q7Z404	712 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	TRPM4	Q8TD43	1214 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	SH3TC1	Q8TE82	1336 aa		13.58	□□□□□ -0.24
MBD4-208	ENST00000509828	ZNF157	P51786	506 aa	Predicted RBP	13.57	□□□□□ -0.24
MBD4-208	ENST00000509828	RGMB	Q6NW40	437 aa		13.57	□□□□□ -0.24
MBD4-208	ENST00000509828	SAMD7	Q7Z3H4	446 aa		13.57	□□□□□ -0.24
MBD4-208	ENST00000509828	XAGE3	Q8WTP9	111 aa		13.57	□□□□□ -0.24
MBD4-208	ENST00000509828	CCDC102A	Q96A19	550 aa		13.57	□□□□□ -0.24
MBD4-208	ENST00000509828	ZNF428	Q96B54	188 aa		13.57	□□□□□ -0.24
MBD4-208	ENST00000509828	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.57	□□□□□ -0.24
MBD4-208	ENST00000509828	NUP98	P52948	1817 aa		13.56	□□□□□ -0.24
MBD4-208	ENST00000509828	SHTN1	A0MZ66	631 aa		13.56	□□□□□ -0.24
MBD4-208	ENST00000509828	TCIRG1	Q13488	830 aa		13.56	□□□□□ -0.24
MBD4-208	ENST00000509828	NLRP10	Q86W26	655 aa		13.56	□□□□□ -0.24
MBD4-208	ENST00000509828	DBNDD1	Q9H9R9	158 aa		13.56	□□□□□ -0.24
MBD4-208	ENST00000509828	GBA2	Q9HCG7	927 aa	Predicted RBP	13.56	□□□□□ -0.24
MBD4-208	ENST00000509828	TRPM7	Q96QT4	1865 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	PSMD14	O00487	310 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	TRPA1	O75762	1119 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	RIPK4	P57078	832 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	KIF23	Q02241	960 aa	Predicted RBP	13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	PROSER3	Q2NL68	480 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	DPF2	Q92785	391 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	PLEKHF1	Q96S99	279 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	ZIC5	Q96T25	663 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	EYA3	Q99504	573 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	PCDH10	Q9P2E7	1040 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	LAMB4	A4D0S4	1761 aa		13.55	□□□□□ -0.24
MBD4-208	ENST00000509828	YDJC	A8MPS7	323 aa		13.54	□□□□□ -0.24
MBD4-208	ENST00000509828	LMOD3	Q0VAK6	560 aa		13.54	□□□□□ -0.24
MBD4-208	ENST00000509828	PDIA6	Q15084	440 aa		13.54	□□□□□ -0.24
MBD4-208	ENST00000509828	DOK7	Q18PE1	504 aa		13.54	□□□□□ -0.24
MBD4-208	ENST00000509828	DLK2	Q6UY11	383 aa		13.54	□□□□□ -0.24
MBD4-208	ENST00000509828	SULF1	Q8IWU6	871 aa		13.54	□□□□□ -0.24
MBD4-208	ENST00000509828	LAS1L	Q9Y4W2	734 aa	Known RBP	13.54	□□□□□ -0.24
MBD4-208	ENST00000509828	THSD7B	Q9C0I4	1608 aa		13.53	□□□□□ -0.24
MBD4-208	ENST00000509828	RPS12	P25398	132 aa	Known RBP	13.53	□□□□□ -0.24
MBD4-208	ENST00000509828	SOX10	P56693	466 aa		13.53	□□□□□ -0.24
MBD4-208	ENST00000509828	ADM5	C9JUS6	153 aa		13.52	□□□□□ -0.25
MBD4-208	ENST00000509828	ECE2	O60344	883 aa		13.52	□□□□□ -0.25
MBD4-208	ENST00000509828	RTL5	Q5HYW3	569 aa	Predicted RBP	13.52	□□□□□ -0.25
MBD4-208	ENST00000509828	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.52	□□□□□ -0.25
MBD4-208	ENST00000509828	BABAM1	Q9NWV8	329 aa		13.52	□□□□□ -0.25
MBD4-208	ENST00000509828	RNF186	Q9NXI6	227 aa		13.52	□□□□□ -0.25
MBD4-208	ENST00000509828	SAGE1	Q9NXZ1	904 aa		13.52	□□□□□ -0.25
MBD4-208	ENST00000509828	NEUROD2	Q15784	382 aa		13.51	□□□□□ -0.25
MBD4-208	ENST00000509828	KIF4B	Q2VIQ3	1234 aa		13.51	□□□□□ -0.25
MBD4-208	ENST00000509828	FAM89A	Q96GI7	184 aa		13.51	□□□□□ -0.25
MBD4-208	ENST00000509828	CASP8AP2	Q9UKL3	1982 aa		13.51	□□□□□ -0.25
MBD4-208	ENST00000509828	ATP5J2-PTCD1	G3V325	749 aa		13.5	□□□□□ -0.25
MBD4-208	ENST00000509828	GPSM2	P81274	684 aa		13.5	□□□□□ -0.25
MBD4-208	ENST00000509828	ANKRD13D	Q6ZTN6	518 aa		13.5	□□□□□ -0.25
MBD4-208	ENST00000509828	LRP10	Q7Z4F1	713 aa		13.5	□□□□□ -0.25
MBD4-208	ENST00000509828	CELF1	Q92879	486 aa	Known RBP	13.5	□□□□□ -0.25
MBD4-208	ENST00000509828	ANKIB1	Q9P2G1	1089 aa		13.5	□□□□□ -0.25
MBD4-208	ENST00000509828	HDAC9	Q9UKV0	1011 aa		13.5	□□□□□ -0.25
MBD4-208	ENST00000509828	FAM155A	B1AL88	458 aa	Predicted RBP	13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	EGFR	P00533	1210 aa		13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	RPS8	P62241	208 aa	Known RBP	13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	CTU1	Q7Z7A3	348 aa	Known RBP	13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	REM2	Q8IYK8	340 aa	Predicted RBP	13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	PLBD2	Q8NHP8	589 aa		13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	KCNQ5	Q9NR82	932 aa		13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	GGA3	Q9NZ52	723 aa		13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	POLL	Q9UGP5	575 aa		13.49	□□□□□ -0.25
MBD4-208	ENST00000509828	KDM3B	Q7LBC6	1761 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms