RNA–Protein interactions for RNA: ENST00000509084.1

RFC1-211, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 483 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-211ENST00000509084 NPHP1O15259 732 aa12.91□□□□□ -0.34
RFC1-211ENST00000509084 IGHDP01880 384 aa12.91□□□□□ -0.34
RFC1-211ENST00000509084 GTF2E1P29083 439 aaPredicted RBP12.91□□□□□ -0.34
RFC1-211ENST00000509084 NFIXQ14938 502 aa12.91□□□□□ -0.34
RFC1-211ENST00000509084 HSP90AB4PQ58FF6 505 aa12.91□□□□□ -0.34
RFC1-211ENST00000509084 SIRT2Q8IXJ6 389 aa12.91□□□□□ -0.34
RFC1-211ENST00000509084 SMC5Q8IY18 1101 aa12.91□□□□□ -0.34
RFC1-211ENST00000509084 SLC16A10Q8TF71 515 aa12.91□□□□□ -0.34
RFC1-211ENST00000509084 KAZALD1Q96I82 304 aa12.91□□□□□ -0.34
RFC1-211ENST00000509084 PNMA6EA0A0J9YXQ4 647 aa12.9□□□□□ -0.34
RFC1-211ENST00000509084 CTSWP56202 376 aa12.9□□□□□ -0.34
RFC1-211ENST00000509084 FOXO4P98177 505 aa12.9□□□□□ -0.34
RFC1-211ENST00000509084 RTL5Q5HYW3 569 aaPredicted RBP12.9□□□□□ -0.34
RFC1-211ENST00000509084 CNBD1Q8NA66 436 aa12.9□□□□□ -0.34
RFC1-211ENST00000509084 DDX60Q8IY21 1712 aaKnown RBP12.9□□□□□ -0.34
RFC1-211ENST00000509084 FAM177BA6PVY3 158 aa12.89□□□□□ -0.35
RFC1-211ENST00000509084 TM4SF1P30408 202 aa12.89□□□□□ -0.35
RFC1-211ENST00000509084 ST5P78524 1137 aa12.89□□□□□ -0.35
RFC1-211ENST00000509084 EPHA10Q5JZY3 1008 aa12.89□□□□□ -0.35
RFC1-211ENST00000509084 SLC10A5Q5PT55 438 aa12.89□□□□□ -0.35
RFC1-211ENST00000509084 LMBR1LQ6UX01 489 aa12.89□□□□□ -0.35
RFC1-211ENST00000509084 JARID2Q92833 1246 aaPredicted RBP12.89□□□□□ -0.35
RFC1-211ENST00000509084 DCTPP1Q9H773 170 aa12.89□□□□□ -0.35
RFC1-211ENST00000509084 ZBTB47Q9UFB7 747 aaPredicted RBP12.89□□□□□ -0.35
RFC1-211ENST00000509084 SERPINB2P05120 415 aa12.88□□□□□ -0.35
RFC1-211ENST00000509084 CSF1RP07333 972 aa12.88□□□□□ -0.35
RFC1-211ENST00000509084 CCDC152Q4G0S7 254 aa12.88□□□□□ -0.35
RFC1-211ENST00000509084 FBXO3Q9UK99 471 aa12.88□□□□□ -0.35
RFC1-211ENST00000509084 RTL9Q8NET4 1388 aa12.88□□□□□ -0.35
RFC1-211ENST00000509084 NRXN2Q9P2S2 1712 aa12.88□□□□□ -0.35
RFC1-211ENST00000509084 POLRMTO00411 1230 aaKnown RBP12.87□□□□□ -0.35
RFC1-211ENST00000509084 RAB11FIP3O75154 756 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 CCDC57Q2TAC2 916 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 ERFEQ4G0M1 354 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 NUTM1Q86Y26 1132 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 ERC1Q8IUD2 1116 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 TTLL11Q8NHH1 800 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 NLRP3Q96P20 1036 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 COPRSQ9NQ92 184 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 NOP58Q9Y2X3 529 aaKnown RBP12.87□□□□□ -0.35
RFC1-211ENST00000509084 CHMP3Q9Y3E7 222 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 PARP3Q9Y6F1 533 aa12.87□□□□□ -0.35
RFC1-211ENST00000509084 ABCC12Q96J65 1359 aa12.86□□□□□ -0.35
RFC1-211ENST00000509084 SURF6O75683 361 aaKnown RBP12.86□□□□□ -0.35
RFC1-211ENST00000509084 IFIT5Q13325 482 aaKnown RBP12.86□□□□□ -0.35
RFC1-211ENST00000509084 SF3B3Q15393 1217 aaKnown RBP12.86□□□□□ -0.35
RFC1-211ENST00000509084 CASZ1Q86V15 1759 aa12.86□□□□□ -0.35
RFC1-211ENST00000509084 ANKRD18BA2A2Z9 1011 aa12.85□□□□□ -0.35
RFC1-211ENST00000509084 MMP10P09238 476 aa12.85□□□□□ -0.35
RFC1-211ENST00000509084 HCLS1P14317 486 aaPredicted RBP12.85□□□□□ -0.35
RFC1-211ENST00000509084 DDR1Q08345 913 aa12.85□□□□□ -0.35
RFC1-211ENST00000509084 G3BP1Q13283 466 aaKnown RBP eCLIP12.85□□□□□ -0.35
RFC1-211ENST00000509084 OS9Q13438 667 aaPredicted RBP12.85□□□□□ -0.35
RFC1-211ENST00000509084 FAM161AQ3B820 660 aa12.85□□□□□ -0.35
RFC1-211ENST00000509084 TAF7LQ5H9L4 462 aa12.85□□□□□ -0.35
RFC1-211ENST00000509084 PRR5LQ6MZQ0 368 aa12.85□□□□□ -0.35
RFC1-211ENST00000509084 SYNE4Q8N205 404 aa12.85□□□□□ -0.35
RFC1-211ENST00000509084 KIF1BPQ96EK5 621 aa12.85□□□□□ -0.35
RFC1-211ENST00000509084 LRP5O75197 1615 aa12.84□□□□□ -0.35
RFC1-211ENST00000509084 ITGA6P23229 1130 aa12.84□□□□□ -0.35
RFC1-211ENST00000509084 RFX5P48382 616 aaPredicted RBP12.84□□□□□ -0.35
RFC1-211ENST00000509084 NUCB1Q02818 461 aa12.84□□□□□ -0.35
RFC1-211ENST00000509084 PTPN12Q05209 780 aaKnown RBP12.84□□□□□ -0.35
RFC1-211ENST00000509084 CDC5LQ99459 802 aaKnown RBP12.84□□□□□ -0.35
RFC1-211ENST00000509084 LRRCC1Q9C099 1032 aa12.84□□□□□ -0.35
RFC1-211ENST00000509084 GREM2Q9H772 168 aa12.84□□□□□ -0.35
RFC1-211ENST00000509084 EXOC6BQ9Y2D4 811 aa12.84□□□□□ -0.35
RFC1-211ENST00000509084 CIAO1O76071 339 aa12.83□□□□□ -0.36
RFC1-211ENST00000509084 ANKRD45Q5TZF3 282 aa12.83□□□□□ -0.36
RFC1-211ENST00000509084 CHD1LQ86WJ1 897 aa12.83□□□□□ -0.36
RFC1-211ENST00000509084 PELP1Q8IZL8 1130 aaKnown RBP12.83□□□□□ -0.36
RFC1-211ENST00000509084 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
RFC1-211ENST00000509084 PDZRN3Q9UPQ7 1066 aa12.83□□□□□ -0.36
RFC1-211ENST00000509084 TNRC6CQ9HCJ0 1690 aaKnown RBP12.83□□□□□ -0.36
RFC1-211ENST00000509084 IL15P40933 162 aaPredicted RBP12.82□□□□□ -0.36
RFC1-211ENST00000509084 MSL1Q68DK7 614 aa12.82□□□□□ -0.36
RFC1-211ENST00000509084 BRIP1Q9BX63 1249 aa12.82□□□□□ -0.36
RFC1-211ENST00000509084 MTFR1LQ9H019 292 aa12.82□□□□□ -0.36
RFC1-211ENST00000509084 PA2G4Q9UQ80 394 aaKnown RBP12.82□□□□□ -0.36
RFC1-211ENST00000509084 EYA2O00167 538 aa12.81□□□□□ -0.36
RFC1-211ENST00000509084 IGHMBP2P38935 993 aaKnown RBP12.81□□□□□ -0.36
RFC1-211ENST00000509084 RHPN1Q8TCX5 695 aa12.81□□□□□ -0.36
RFC1-211ENST00000509084 RPGRQ92834 1020 aaKnown RBP12.81□□□□□ -0.36
RFC1-211ENST00000509084 POLD1P28340 1107 aa12.8□□□□□ -0.36
RFC1-211ENST00000509084 PDE6BP35913 854 aa12.8□□□□□ -0.36
RFC1-211ENST00000509084 FXR2P51116 673 aaKnown RBP eCLIP12.8□□□□□ -0.36
RFC1-211ENST00000509084 R3HDM1Q15032 1099 aaKnown RBP12.8□□□□□ -0.36
RFC1-211ENST00000509084 CRY2Q49AN0 593 aa12.8□□□□□ -0.36
RFC1-211ENST00000509084 DDX46Q7L014 1031 aaKnown RBP12.8□□□□□ -0.36
RFC1-211ENST00000509084 ANKRD18AQ8IVF6 992 aa12.8□□□□□ -0.36
RFC1-211ENST00000509084 CLASRPQ8N2M8 674 aaKnown RBP12.8□□□□□ -0.36
RFC1-211ENST00000509084 CCDC85AQ96PX6 553 aaPredicted RBP12.8□□□□□ -0.36
RFC1-211ENST00000509084 MPHOSPH8Q99549 860 aa12.8□□□□□ -0.36
RFC1-211ENST00000509084 LNPKQ9C0E8 428 aa12.8□□□□□ -0.36
RFC1-211ENST00000509084 SIL1Q9H173 461 aa12.8□□□□□ -0.36
RFC1-211ENST00000509084 ANKRD31Q8N7Z5 1873 aa12.79□□□□□ -0.36
RFC1-211ENST00000509084 KLRG2A4D1S0 409 aaPredicted RBP12.79□□□□□ -0.36
RFC1-211ENST00000509084 APBB1O00213 710 aa12.79□□□□□ -0.36
RFC1-211ENST00000509084 LDHAL6AQ6ZMR3 332 aa12.79□□□□□ -0.36
RFC1-211ENST00000509084 KLHDC4Q8TBB5 520 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms