RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 RPGRIP1Q96KN7 1286 aa12.75□□□□□ -0.37
LIMCH1-208ENST00000508501 EIF2AQ9BY44 585 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-208ENST00000508501 SRGAP3O43295 1099 aa12.75□□□□□ -0.37
LIMCH1-208ENST00000508501 DNA2P51530 1060 aa12.75□□□□□ -0.37
LIMCH1-208ENST00000508501 HOMEZQ8IX15 550 aa12.75□□□□□ -0.37
LIMCH1-208ENST00000508501 TRIM35Q9UPQ4 493 aa12.75□□□□□ -0.37
LIMCH1-208ENST00000508501 CECR2Q9BXF3 1484 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 PRKAR2BP31323 418 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 TRIM14Q14142 442 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 UTP14CQ5TAP6 766 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 MCUR1Q96AQ8 359 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 MINK1Q8N4C8 1332 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 GOLGA6CA6NDK9 693 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 GOLGA6DP0CG33 693 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 UBA7P41226 1012 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 SLFN5Q08AF3 891 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 CFAP157Q5JU67 520 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 CCDC62Q6P9F0 684 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 TBC1D31Q96DN5 1066 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 PUS7Q96PZ0 661 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 GOLGA6AQ9NYA3 693 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 SERPINA10Q9UK55 444 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 PSMA7O14818 248 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 ACTN4O43707 911 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 MICAL1Q8TDZ2 1067 aa12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 ZFP91Q96JP5 570 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-208ENST00000508501 CETN3O15182 167 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 HMOX1P09601 288 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 SYKP43405 635 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 EVCP57679 992 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 MTMR3Q13615 1198 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 SAMD1Q6SPF0 538 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 IQCA1Q86XH1 822 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 DDX27Q96GQ7 796 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 TRIM47Q96LD4 638 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 HIP1RO75146 1068 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 SMC1BQ8NDV3 1235 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 MRPS27Q92552 414 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 AIDAQ96BJ3 306 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 MYO1BO43795 1136 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 NBPF7P0C2Y1 421 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 PRPF40BQ6NWY9 871 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 CCDC42Q96M95 316 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 MPHOSPH8Q99549 860 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 C1orf115Q9H7X2 142 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 RAPGEF2Q9Y4G8 1499 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 BRD2P25440 801 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 APBB1IPQ7Z5R6 666 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 RAD50Q92878 1312 aa12.73□□□□□ -0.37
LIMCH1-208ENST00000508501 AFAP1L2Q8N4X5 818 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 PPP1R9BQ96SB3 815 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 VEZTQ9HBM0 779 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 PLCB1Q9NQ66 1216 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 TTF2Q9UNY4 1162 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 NPHP3Q7Z494 1330 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 LRRD1A4D1F6 860 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 ZNF526Q8TF50 670 aaPredicted RBP12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 HVCN1Q96D96 273 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 GJB2P29033 226 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 VSIG1Q86XK7 387 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 TXNDC16Q9P2K2 825 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 VIMP08670 466 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 NLRP5P59047 1200 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 TRAF1Q13077 416 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 ANO6Q4KMQ2 910 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 SLC12A7Q9Y666 1083 aa12.72□□□□□ -0.37
LIMCH1-208ENST00000508501 BICDL2A1A5D9 508 aa12.71□□□□□ -0.37
LIMCH1-208ENST00000508501 ZSCAN26Q16670 478 aa12.71□□□□□ -0.37
LIMCH1-208ENST00000508501 IFT20Q8IY31 132 aa12.71□□□□□ -0.37
LIMCH1-208ENST00000508501 VPS52Q8N1B4 723 aa12.71□□□□□ -0.37
LIMCH1-208ENST00000508501 PRR16Q569H4 304 aa12.71□□□□□ -0.37
LIMCH1-208ENST00000508501 TRIM4Q9C037 500 aa12.71□□□□□ -0.37
LIMCH1-208ENST00000508501 BRD3Q15059 726 aa12.71□□□□□ -0.38
LIMCH1-208ENST00000508501 CCDC144CPQ8IYA2 1237 aa12.71□□□□□ -0.38
LIMCH1-208ENST00000508501 EXOC1Q9NV70 894 aa12.71□□□□□ -0.38
LIMCH1-208ENST00000508501 FYCO1Q9BQS8 1478 aa12.71□□□□□ -0.38
LIMCH1-208ENST00000508501 FCHSD2O94868 740 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 CCDC63Q8NA47 563 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 GABPB2Q8TAK5 448 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 BICD1Q96G01 975 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 ATP8B1O43520 1251 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 KCNK9Q9NPC2 374 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 FAF1Q9UNN5 650 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 PFDN1O60925 122 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 IARSP41252 1262 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 SLMAPQ14BN4 828 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 GKAP1Q5VSY0 366 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 TCERG1LQ5VWI1 586 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 SDCCAG8Q86SQ7 713 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 IMPACTQ9P2X3 320 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 TSKSQ9UJT2 592 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 TAF7Q15545 349 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 AMOTQ4VCS5 1084 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 CUL5Q93034 780 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 EVI5LQ96CN4 794 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 HAUS8Q9BT25 410 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 TACC3Q9Y6A5 838 aa12.7□□□□□ -0.38
LIMCH1-208ENST00000508501 SPTY2D1Q68D10 685 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-208ENST00000508501 GOLGA5Q8TBA6 731 aa12.69□□□□□ -0.38
LIMCH1-208ENST00000508501 HFM1A2PYH4 1435 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms