RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 MYD88Q99836 296 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 TLR7Q9NYK1 1049 aaKnown RBP19.55■□□□□ 0.72
COL6A1-206ENST00000498614 SMC3Q9UQE7 1217 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 PRPF40BQ6NWY9 871 aaKnown RBP19.55■□□□□ 0.72
COL6A1-206ENST00000498614 ZNF710Q8N1W2 664 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 EVI5LQ96CN4 794 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 FUCA2Q9BTY2 467 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 CARD10Q9BWT7 1032 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.55■□□□□ 0.72
COL6A1-206ENST00000498614 NEURL1BA8MQ27 555 aa19.54■□□□□ 0.72
COL6A1-206ENST00000498614 NEXNQ0ZGT2 675 aa19.54■□□□□ 0.72
COL6A1-206ENST00000498614 SPTLC3Q9NUV7 552 aa19.54■□□□□ 0.72
COL6A1-206ENST00000498614 CCDC9Q9Y3X0 531 aaKnown RBP19.54■□□□□ 0.72
COL6A1-206ENST00000498614 AP5Z1O43299 807 aa19.54■□□□□ 0.72
COL6A1-206ENST00000498614 ADCK5Q3MIX3 580 aa19.54■□□□□ 0.72
COL6A1-206ENST00000498614 ABCC6O95255 1503 aa19.53■□□□□ 0.72
COL6A1-206ENST00000498614 IFNL2Q8IZJ0 200 aa19.53■□□□□ 0.72
COL6A1-206ENST00000498614 LRP6O75581 1613 aa19.53■□□□□ 0.72
COL6A1-206ENST00000498614 HMGN5P82970 282 aaKnown RBP19.52■□□□□ 0.72
COL6A1-206ENST00000498614 PLCB2Q00722 1185 aa19.52■□□□□ 0.72
COL6A1-206ENST00000498614 GCKRQ14397 625 aa19.52■□□□□ 0.72
COL6A1-206ENST00000498614 EPHA10Q5JZY3 1008 aa19.52■□□□□ 0.72
COL6A1-206ENST00000498614 DDX54Q8TDD1 881 aaKnown RBP19.52■□□□□ 0.72
COL6A1-206ENST00000498614 FAM227BQ96M60 508 aa19.52■□□□□ 0.72
COL6A1-206ENST00000498614 JAKMIP1Q96N16 626 aaKnown RBP19.52■□□□□ 0.72
COL6A1-206ENST00000498614 CCDC94Q9BW85 323 aaPredicted RBP19.52■□□□□ 0.72
COL6A1-206ENST00000498614 USP16Q9Y5T5 823 aa19.52■□□□□ 0.72
COL6A1-206ENST00000498614 COL14A1Q05707 1796 aaKnown RBP19.52■□□□□ 0.72
COL6A1-206ENST00000498614 DNM1Q05193 864 aaKnown RBP19.52■□□□□ 0.72
COL6A1-206ENST00000498614 SMAP1Q8IYB5 467 aaPredicted RBP19.52■□□□□ 0.72
COL6A1-206ENST00000498614 FAM177BA6PVY3 158 aa19.51■□□□□ 0.71
COL6A1-206ENST00000498614 GTF2F1P35269 517 aaKnown RBP eCLIP19.51■□□□□ 0.71
COL6A1-206ENST00000498614 CCDC83Q8IWF9 413 aa19.51■□□□□ 0.71
COL6A1-206ENST00000498614 BOLA2Q9H3K6 86 aa19.51■□□□□ 0.71
COL6A1-206ENST00000498614 IL2RBP14784 551 aa19.51■□□□□ 0.71
COL6A1-206ENST00000498614 NMIQ13287 307 aaPredicted RBP19.51■□□□□ 0.71
COL6A1-206ENST00000498614 TTC5Q8N0Z6 440 aa19.51■□□□□ 0.71
COL6A1-206ENST00000498614 METTL22Q9BUU2 404 aaPredicted RBP19.51■□□□□ 0.71
COL6A1-206ENST00000498614 PRDM10Q9NQV6 1147 aa19.51■□□□□ 0.71
COL6A1-206ENST00000498614 MTMR6Q9Y217 621 aa19.51■□□□□ 0.71
COL6A1-206ENST00000498614 CCDC171Q6TFL3 1326 aa19.51■□□□□ 0.71
COL6A1-206ENST00000498614 CYP27B1O15528 508 aa19.5■□□□□ 0.71
COL6A1-206ENST00000498614 GJB2P29033 226 aa19.5■□□□□ 0.71
COL6A1-206ENST00000498614 MEX3CQ5U5Q3 659 aaKnown RBP19.5■□□□□ 0.71
COL6A1-206ENST00000498614 ATP6V1DQ9Y5K8 247 aa19.5■□□□□ 0.71
COL6A1-206ENST00000498614 PDRG1Q9NUG6 133 aa19.5■□□□□ 0.71
COL6A1-206ENST00000498614 ANKRD13DQ6ZTN6 518 aa19.49■□□□□ 0.71
COL6A1-206ENST00000498614 KCNF1Q9H3M0 494 aa19.49■□□□□ 0.71
COL6A1-206ENST00000498614 RBM8AQ9Y5S9 174 aaKnown RBP19.49■□□□□ 0.71
COL6A1-206ENST00000498614 SPATA31A6Q5VVP1 1343 aa19.49■□□□□ 0.71
COL6A1-206ENST00000498614 SNRPA1P09661 255 aaKnown RBP19.49■□□□□ 0.71
COL6A1-206ENST00000498614 KCNJ4P48050 445 aa19.49■□□□□ 0.71
COL6A1-206ENST00000498614 PLCH1Q4KWH8 1693 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 NECTIN1Q15223 517 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 LRP10Q7Z4F1 713 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 FSD1Q9BTV5 496 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.48■□□□□ 0.71
COL6A1-206ENST00000498614 PYCARDQ9ULZ3 195 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 A0A0D9SFI3 127 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 ST3GAL1Q11201 340 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 ZCRB1Q8TBF4 217 aaKnown RBP19.48■□□□□ 0.71
COL6A1-206ENST00000498614 DCAF5Q96JK2 942 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 CYP46A1Q9Y6A2 500 aa19.48■□□□□ 0.71
COL6A1-206ENST00000498614 VPS53Q5VIR6 699 aa19.47■□□□□ 0.71
COL6A1-206ENST00000498614 KIAA1524Q8TCG1 905 aa19.47■□□□□ 0.71
COL6A1-206ENST00000498614 ZSWIM6Q9HCJ5 1215 aa19.47■□□□□ 0.71
COL6A1-206ENST00000498614 CREB3L3Q68CJ9 461 aa19.47■□□□□ 0.71
COL6A1-206ENST00000498614 SPC24Q8NBT2 197 aa19.47■□□□□ 0.71
COL6A1-206ENST00000498614 KCNB2Q92953 911 aa19.47■□□□□ 0.71
COL6A1-206ENST00000498614 KIF3AQ9Y496 699 aa19.47■□□□□ 0.71
COL6A1-206ENST00000498614 AFDNP55196 1824 aaKnown RBP19.46■□□□□ 0.71
COL6A1-206ENST00000498614 ATP5J2-PTCD1G3V325 749 aa19.46■□□□□ 0.71
COL6A1-206ENST00000498614 HIP1O00291 1037 aa19.46■□□□□ 0.71
COL6A1-206ENST00000498614 PTCD1O75127 700 aaKnown RBP19.46■□□□□ 0.71
COL6A1-206ENST00000498614 ZKSCAN1P17029 563 aaPredicted RBP19.46■□□□□ 0.71
COL6A1-206ENST00000498614 FMNL2Q96PY5 1086 aa19.46■□□□□ 0.71
COL6A1-206ENST00000498614 SLIT2O94813 1529 aa19.46■□□□□ 0.71
COL6A1-206ENST00000498614 VPS37CA5D8V6 355 aaPredicted RBP19.46■□□□□ 0.71
COL6A1-206ENST00000498614 UBE3BQ7Z3V4 1068 aa19.46■□□□□ 0.71
COL6A1-206ENST00000498614 MAP4K1Q92918 833 aa19.46■□□□□ 0.71
COL6A1-206ENST00000498614 EDC3Q96F86 508 aaKnown RBP19.46■□□□□ 0.71
COL6A1-206ENST00000498614 TM6SF1Q9BZW5 370 aa19.46■□□□□ 0.71
COL6A1-206ENST00000498614 USP21Q9UK80 565 aa19.46■□□□□ 0.71
COL6A1-206ENST00000498614 COL9A3Q14050 684 aaPredicted RBP19.45■□□□□ 0.7
COL6A1-206ENST00000498614 CABP4P57796 275 aa19.44■□□□□ 0.7
COL6A1-206ENST00000498614 NECAB1Q8N987 351 aa19.44■□□□□ 0.7
COL6A1-206ENST00000498614 SPATA31A1Q5TZJ5 1347 aa19.44■□□□□ 0.7
COL6A1-206ENST00000498614 MRC1P22897 1456 aa19.44■□□□□ 0.7
COL6A1-206ENST00000498614 BCL9LQ86UU0 1499 aa19.44■□□□□ 0.7
COL6A1-206ENST00000498614 ME3Q16798 604 aa19.44■□□□□ 0.7
COL6A1-206ENST00000498614 BCL2L12Q9HB09 334 aa19.44■□□□□ 0.7
COL6A1-206ENST00000498614 SLC27A2O14975 620 aa19.43■□□□□ 0.7
COL6A1-206ENST00000498614 RFX5P48382 616 aaPredicted RBP19.43■□□□□ 0.7
COL6A1-206ENST00000498614 PTPN12Q05209 780 aaKnown RBP19.43■□□□□ 0.7
COL6A1-206ENST00000498614 TFCP2Q12800 502 aa19.43■□□□□ 0.7
COL6A1-206ENST00000498614 FNBP4Q8N3X1 1017 aaPredicted RBP19.43■□□□□ 0.7
COL6A1-206ENST00000498614 ZSCAN31Q96LW9 406 aaPredicted RBP19.43■□□□□ 0.7
COL6A1-206ENST00000498614 COPRSQ9NQ92 184 aa19.43■□□□□ 0.7
COL6A1-206ENST00000498614 SH2B1Q9NRF2 756 aaPredicted RBP19.43■□□□□ 0.7
COL6A1-206ENST00000498614 ARFGEF2Q9Y6D5 1785 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms