RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 RGS19P49795 217 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 TLL2Q9Y6L7 1015 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 FKBP4Q02790 459 aaKnown RBP eCLIP6.21□□□□□ -1.42
USP54-216ENST00000498143 HDAC1Q13547 482 aaPredicted RBP6.21□□□□□ -1.42
USP54-216ENST00000498143 PTF1AQ7RTS3 328 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 PAF1Q8N7H5 531 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 MYO5CQ9NQX4 1742 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 PES1O00541 588 aaKnown RBP6.2□□□□□ -1.42
USP54-216ENST00000498143 SYN1P17600 705 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 PROM2Q8N271 834 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 CD99L2Q8TCZ2 262 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 BRIP1Q9BX63 1249 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 MFSD1Q9H3U5 465 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 CGNL1Q0VF96 1302 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 EPS15P42566 896 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 GMPSP49915 693 aaPredicted RBP6.2□□□□□ -1.42
USP54-216ENST00000498143 CHMP4BP1P59074 171 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 CALD1Q05682 793 aaKnown RBP6.2□□□□□ -1.42
USP54-216ENST00000498143 NOL10Q9BSC4 688 aaKnown RBP6.2□□□□□ -1.42
USP54-216ENST00000498143 UPF3BQ9BZI7 483 aaKnown RBP6.2□□□□□ -1.42
USP54-216ENST00000498143 PDCL3Q9H2J4 239 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 SLC28A3Q9HAS3 691 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 LRRC4BQ9NT99 713 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 SAGE1Q9NXZ1 904 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 UNC13BO14795 1591 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 KTN1Q86UP2 1357 aaKnown RBP6.2□□□□□ -1.42
USP54-216ENST00000498143 BECN1Q14457 450 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 RALBP1Q15311 655 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 PPP1R42Q7Z4L9 355 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 CCDC82Q8N4S0 544 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 SPINK5Q9NQ38 1064 aaPredicted RBP6.2□□□□□ -1.42
USP54-216ENST00000498143 CASKIN1Q8WXD9 1431 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 NRKQ7Z2Y5 1582 aa6.2□□□□□ -1.42
USP54-216ENST00000498143 CCP110O43303 1012 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 HTATSF1O43719 755 aaKnown RBP6.19□□□□□ -1.42
USP54-216ENST00000498143 PLA2G5P39877 138 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 MICALL2Q8IY33 904 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 AKT1S1Q96B36 256 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 POTEIP0CG38 1075 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 POTEJP0CG39 1038 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 B4GALNT3Q6L9W6 998 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 BANK1Q8NDB2 785 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 KCNG1Q9UIX4 513 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 POLR3AO14802 1390 aaPredicted RBP6.19□□□□□ -1.42
USP54-216ENST00000498143 SAMD9LQ8IVG5 1584 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 MSNP26038 577 aaKnown RBP6.19□□□□□ -1.42
USP54-216ENST00000498143 FOSBP53539 338 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 ATOH1Q92858 354 aaPredicted RBP6.19□□□□□ -1.42
USP54-216ENST00000498143 DCAF5Q96JK2 942 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 SPC25Q9HBM1 224 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 NHSL1Q5SYE7 1610 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 EHBP1L1Q8N3D4 1523 aa6.19□□□□□ -1.42
USP54-216ENST00000498143 FCGRTP55899 365 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 TNFAIP1Q13829 316 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 ZRSR2Q15696 482 aaKnown RBP6.18□□□□□ -1.42
USP54-216ENST00000498143 ARMCX6Q7L4S7 300 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 SH3BP5O60239 455 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 MRPS5P82675 430 aaKnown RBP6.18□□□□□ -1.42
USP54-216ENST00000498143 MDM2Q00987 491 aaPredicted RBP6.18□□□□□ -1.42
USP54-216ENST00000498143 HELBQ8NG08 1087 aaPredicted RBP6.18□□□□□ -1.42
USP54-216ENST00000498143 PPP2R3CQ969Q6 453 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 SLC24A3Q9HC58 644 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 ZNRF3Q9ULT6 936 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 NOD1Q9Y239 953 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 CA8P35219 290 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 DLGAP5Q15398 846 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 KIF4BQ2VIQ3 1234 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 NOM1Q5C9Z4 860 aaKnown RBP6.18□□□□□ -1.42
USP54-216ENST00000498143 ZBTB38Q8NAP3 1195 aaPredicted RBP6.18□□□□□ -1.42
USP54-216ENST00000498143 COL25A1Q9BXS0 654 aaPredicted RBP6.18□□□□□ -1.42
USP54-216ENST00000498143 GGA3Q9NZ52 723 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 STXBP5LQ9Y2K9 1186 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 SLIT2O94813 1529 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 SMYD5Q6GMV2 418 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 DZIP3Q86Y13 1208 aaKnown RBP6.18□□□□□ -1.42
USP54-216ENST00000498143 NUDCQ9Y266 331 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 ATP11BQ9Y2G3 1177 aa6.18□□□□□ -1.42
USP54-216ENST00000498143 SLC4A3P48751 1232 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 TDO2P48775 406 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 FXR1P51114 621 aaKnown RBP eCLIP6.17□□□□□ -1.42
USP54-216ENST00000498143 ZC3H15Q8WU90 426 aaKnown RBP6.17□□□□□ -1.42
USP54-216ENST00000498143 CFAP53Q96M91 514 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 MROH1Q8NDA8 1641 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 RAG1P15918 1043 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 PRMT2P55345 433 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 SH3BGRP55822 239 aaPredicted RBP6.17□□□□□ -1.42
USP54-216ENST00000498143 POLA2Q14181 598 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 ANKRD13AQ8IZ07 590 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 DEFB118Q96PH6 123 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 TTC28Q96AY4 2481 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 GJB1P08034 283 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 WASHC4Q2M389 1173 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 Q7L0L9 218 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 CEP120Q8N960 986 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 RNPC3Q96LT9 517 aaKnown RBP6.17□□□□□ -1.42
USP54-216ENST00000498143 STAC3Q96MF2 364 aa6.17□□□□□ -1.42
USP54-216ENST00000498143 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.17□□□□□ -1.422e-6■■■■■ 149.1
USP54-216ENST00000498143 MYBBP1AQ9BQG0 1328 aaKnown RBP6.17□□□□□ -1.42
USP54-216ENST00000498143 KBTBD13C9JR72 458 aa6.16□□□□□ -1.42
USP54-216ENST00000498143 SMARCA5O60264 1052 aaPredicted RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms