RNA–Protein interactions for RNA: ENST00000496549.5

CRNKL1-205, Transcript of crooked neck pre-mRNA splicing factor 1, human

TSL 1 (best)

Gene CRNKL1, Length 4,093 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNKL1-205	ENST00000496549	ZNF428	Q96B54	188 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	CAND2	O75155	1236 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	WDHD1	O75717	1129 aa	Predicted RBP	9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	CWC27	Q6UX04	472 aa	Known RBP	9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	FERMT3	Q86UX7	667 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	RUFY2	Q8WXA3	655 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	PPP1R13B	Q96KQ4	1090 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	SHROOM2	Q13796	1616 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	ANKRD18B	A2A2Z9	1011 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	SDS	P20132	328 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	PLEKHA4	Q9H4M7	779 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	EXOC6B	Q9Y2D4	811 aa		9.41	□□□□□ -0.9
CRNKL1-205	ENST00000496549	SH2B1	Q9NRF2	756 aa	Predicted RBP	9.4	□□□□□ -0.9
CRNKL1-205	ENST00000496549	OLFM4	Q6UX06	510 aa		9.4	□□□□□ -0.9
CRNKL1-205	ENST00000496549	SYTL4	Q96C24	671 aa	Predicted RBP	9.4	□□□□□ -0.9
CRNKL1-205	ENST00000496549	PARD6B	Q9BYG5	372 aa		9.4	□□□□□ -0.9
CRNKL1-205	ENST00000496549	ANAPC4	Q9UJX5	808 aa		9.4	□□□□□ -0.9
CRNKL1-205	ENST00000496549	GOLGA6C	A6NDK9	693 aa		9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	SSB	P05455	408 aa	Known RBP eCLIP	9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	GOLGA6D	P0CG33	693 aa		9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	FBXW10	Q5XX13	1052 aa		9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	IQCE	Q6IPM2	695 aa		9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	CCDC83	Q8IWF9	413 aa		9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	CHCHD3	Q9NX63	227 aa	Known RBP	9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	GOLGA6A	Q9NYA3	693 aa		9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	HOOK1	Q9UJC3	728 aa	Known RBP	9.4	□□□□□ -0.91
CRNKL1-205	ENST00000496549	BUB1B	O60566	1050 aa	Predicted RBP	9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	KIF4A	O95239	1232 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	GJB2	P29033	226 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	PIP4K2B	P78356	416 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	MSL1	Q68DK7	614 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	NYAP1	Q6ZVC0	841 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	UTP14A	Q9BVJ6	771 aa	Known RBP	9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	EFCAB5	A4FU69	1503 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	KLHL33	A6NCF5	533 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	IRF6	O14896	467 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	OPA1	O60313	960 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	TUBB2A	Q13885	445 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ALDH1L2	Q3SY69	923 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	TUBB2B	Q9BVA1	445 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	USP27X	A6NNY8	438 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	SGSM2	O43147	1006 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	SNUPN	O95149	360 aa	Known RBP	9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	CP	P00450	1065 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	SCRN1	Q12765	414 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	SPDL1	Q96EA4	605 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	L2HGDH	Q9H9P8	463 aa		9.39	□□□□□ -0.91
CRNKL1-205	ENST00000496549	RPGRIP1L	Q68CZ1	1315 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ASXL2	Q76L83	1435 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	GOLGA6L10	A0A0M3HER8	536 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	PAX7	P23759	505 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	LRRC23	Q53EV4	343 aa	Predicted RBP	9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	PLA2G4D	Q86XP0	818 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	AOPEP	Q8N6M6	819 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	CLSTN2	Q9H4D0	955 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	PUF60	Q9UHX1	559 aa	Known RBP	9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	TAOK2	Q9UL54	1235 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ARHGAP31	Q2M1Z3	1444 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ADCY10	Q96PN6	1610 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	RHOXF2B	P0C7M4	288 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	KIF5B	P33176	963 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	CUL4A	Q13619	759 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	TSR1	Q2NL82	804 aa	Known RBP	9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	PLEKHM2	Q8IWE5	1019 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	RNF168	Q8IYW5	571 aa	Predicted RBP	9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	RBM33	Q96EV2	1170 aa	Known RBP	9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	RHOXF2	Q9BQY4	288 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	CYP46A1	Q9Y6A2	500 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	KDM5C	P41229	1560 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ATP2B2	Q01814	1243 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ADCY2	Q08462	1091 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	BATF3	Q9NR55	127 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	DMRT2	Q9Y5R5	561 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ABCC11	Q96J66	1382 aa		9.38	□□□□□ -0.91
CRNKL1-205	ENST00000496549	TADA3	O75528	432 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	TBC1D8	O95759	1140 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	RPSA	P08865	295 aa	Known RBP	9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	RPAP2	Q8IXW5	612 aa	Predicted RBP	9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ZNF396	Q96N95	335 aa	Predicted RBP	9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	SWAP70	Q9UH65	585 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	TSPOAP1	O95153	1857 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	DISP3	Q9P2K9	1392 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	RNF40	O75150	1001 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ZRANB2	O95218	330 aa	Known RBP eCLIP	9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	PRPH	P41219	470 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	NFXL1	Q6ZNB6	911 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	PRPF38A	Q8NAV1	312 aa	Known RBP	9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	FAM53C	Q9NYF3	392 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	KIAA0556	O60303	1618 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ELL2	O00472	640 aa	Predicted RBP	9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	IFFO1	Q0D2I5	559 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ARMCX6	Q7L4S7	300 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ATRIP	Q8WXE1	791 aa		9.37	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ECM2	O94769	699 aa	Predicted RBP	9.36	□□□□□ -0.91
CRNKL1-205	ENST00000496549	CEBPZ	Q03701	1054 aa	Known RBP	9.36	□□□□□ -0.91
CRNKL1-205	ENST00000496549	ZRSR2	Q15696	482 aa	Known RBP	9.36	□□□□□ -0.91
CRNKL1-205	ENST00000496549	CAPS2	Q9BXY5	557 aa		9.36	□□□□□ -0.91
CRNKL1-205	ENST00000496549	TFIP11	Q9UBB9	837 aa	Known RBP	9.36	□□□□□ -0.91
CRNKL1-205	ENST00000496549	MRFAP1	Q9Y605	127 aa		9.36	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms