RNA–Protein interactions for RNA: ENST00000494069.1

LRCH3-219, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 783 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-219ENST00000494069 PSMD1Q99460 953 aa11.05□□□□□ -0.64
LRCH3-219ENST00000494069 ANKRD36CQ5JPF3 1778 aa11.05□□□□□ -0.64
LRCH3-219ENST00000494069 FZD9O00144 591 aa11.04□□□□□ -0.64
LRCH3-219ENST00000494069 CCDC27Q2M243 656 aa11.04□□□□□ -0.64
LRCH3-219ENST00000494069 CC2D2BQ6DHV5 1058 aa11.04□□□□□ -0.64
LRCH3-219ENST00000494069 ATP6V0A2Q9Y487 856 aa11.04□□□□□ -0.64
LRCH3-219ENST00000494069 RNF123Q5XPI4 1314 aa11.04□□□□□ -0.64
LRCH3-219ENST00000494069 LAMB2P55268 1798 aa11.03□□□□□ -0.64
LRCH3-219ENST00000494069 GOLGA2Q08379 1002 aa11.03□□□□□ -0.64
LRCH3-219ENST00000494069 TRIM28Q13263 835 aaKnown RBP11.03□□□□□ -0.64
LRCH3-219ENST00000494069 CCDC30Q5VVM6 783 aa11.03□□□□□ -0.64
LRCH3-219ENST00000494069 LARGE2Q8N3Y3 721 aa11.03□□□□□ -0.64
LRCH3-219ENST00000494069 MYD88Q99836 296 aa11.03□□□□□ -0.64
LRCH3-219ENST00000494069 TAF1DQ9H5J8 278 aaPredicted RBP11.03□□□□□ -0.64
LRCH3-219ENST00000494069 TAF1P21675 1872 aa11.03□□□□□ -0.64
LRCH3-219ENST00000494069 COL4A1P02462 1669 aa11.02□□□□□ -0.64
LRCH3-219ENST00000494069 BBOX1O75936 387 aa11.02□□□□□ -0.65
LRCH3-219ENST00000494069 FXR2P51116 673 aaKnown RBP eCLIP11.02□□□□□ -0.65
LRCH3-219ENST00000494069 GRAPQ13588 217 aa11.02□□□□□ -0.65
LRCH3-219ENST00000494069 AOC3Q16853 763 aa11.02□□□□□ -0.65
LRCH3-219ENST00000494069 DDX46Q7L014 1031 aaKnown RBP11.02□□□□□ -0.65
LRCH3-219ENST00000494069 G2E3Q7L622 706 aa11.02□□□□□ -0.65
LRCH3-219ENST00000494069 FAM9BQ8IZU0 186 aa11.02□□□□□ -0.65
LRCH3-219ENST00000494069 SPDYE1Q8NFV5 336 aaPredicted RBP11.02□□□□□ -0.65
LRCH3-219ENST00000494069 GRAPLQ8TC17 118 aaPredicted RBP11.02□□□□□ -0.65
LRCH3-219ENST00000494069 CELF1Q92879 486 aaKnown RBP11.02□□□□□ -0.65
LRCH3-219ENST00000494069 L3MBTL3Q96JM7 780 aaPredicted RBP11.02□□□□□ -0.65
LRCH3-219ENST00000494069 GJA3Q9Y6H8 435 aa11.02□□□□□ -0.65
LRCH3-219ENST00000494069 SPDYE4A6NLX3 237 aa11.01□□□□□ -0.65
LRCH3-219ENST00000494069 IRS4O14654 1257 aaPredicted RBP11.01□□□□□ -0.65
LRCH3-219ENST00000494069 PPIP5K2O43314 1243 aa11.01□□□□□ -0.65
LRCH3-219ENST00000494069 SF3B3Q15393 1217 aaKnown RBP11.01□□□□□ -0.65
LRCH3-219ENST00000494069 TWISTNBQ3B726 338 aaPredicted RBP11.01□□□□□ -0.65
LRCH3-219ENST00000494069 CHADLQ6NUI6 762 aa11.01□□□□□ -0.65
LRCH3-219ENST00000494069 SP8Q8IXZ3 490 aa11.01□□□□□ -0.65
LRCH3-219ENST00000494069 JDP2Q8WYK2 163 aa11.01□□□□□ -0.65
LRCH3-219ENST00000494069 METTL22Q9BUU2 404 aaPredicted RBP11.01□□□□□ -0.65
LRCH3-219ENST00000494069 MAP3K2Q9Y2U5 619 aa11.01□□□□□ -0.65
LRCH3-219ENST00000494069 DDX60Q8IY21 1712 aaKnown RBP11.01□□□□□ -0.65
LRCH3-219ENST00000494069 PI4KAP2A4QPH2 592 aa11□□□□□ -0.65
LRCH3-219ENST00000494069 EAPPQ56P03 285 aaPredicted RBP11□□□□□ -0.65
LRCH3-219ENST00000494069 DPP8Q6V1X1 898 aaPredicted RBP11□□□□□ -0.65
LRCH3-219ENST00000494069 GPC2Q8N158 579 aa11□□□□□ -0.65
LRCH3-219ENST00000494069 MPNDQ8N594 471 aa11□□□□□ -0.65
LRCH3-219ENST00000494069 PI4KAP1Q8N8J0 262 aa11□□□□□ -0.65
LRCH3-219ENST00000494069 ZBTB38Q8NAP3 1195 aaPredicted RBP11□□□□□ -0.65
LRCH3-219ENST00000494069 CCDC85AQ96PX6 553 aaPredicted RBP11□□□□□ -0.65
LRCH3-219ENST00000494069 RTFDC1Q9BY42 306 aaPredicted RBP11□□□□□ -0.65
LRCH3-219ENST00000494069 SEC31BQ9NQW1 1179 aa11□□□□□ -0.65
LRCH3-219ENST00000494069 HACL1Q9UJ83 578 aa11□□□□□ -0.65
LRCH3-219ENST00000494069 IL16Q14005 1332 aa11□□□□□ -0.65
LRCH3-219ENST00000494069 FANCIQ9NVI1 1328 aa11□□□□□ -0.65
LRCH3-219ENST00000494069 IQCA1LA6NCM1 817 aa10.99□□□□□ -0.65
LRCH3-219ENST00000494069 IGKV5-2P06315 115 aa10.99□□□□□ -0.65
LRCH3-219ENST00000494069 EPHX2P34913 555 aa10.99□□□□□ -0.65
LRCH3-219ENST00000494069 EIF6P56537 245 aaKnown RBP10.99□□□□□ -0.65
LRCH3-219ENST00000494069 GRIPAP1Q4V328 841 aa10.99□□□□□ -0.65
LRCH3-219ENST00000494069 KSR2Q6VAB6 950 aa10.99□□□□□ -0.65
LRCH3-219ENST00000494069 NIM1KQ8IY84 436 aa10.99□□□□□ -0.65
LRCH3-219ENST00000494069 TMX4Q9H1E5 349 aaPredicted RBP10.99□□□□□ -0.65
LRCH3-219ENST00000494069 VAMP4O75379 141 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 DDX58O95786 925 aaKnown RBP10.98□□□□□ -0.65
LRCH3-219ENST00000494069 PCCAP05165 728 aaPredicted RBP10.98□□□□□ -0.65
LRCH3-219ENST00000494069 EPS15P42566 896 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 SCNN1DP51172 638 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 GPSM2P81274 684 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 EXOSC9Q06265 439 aaKnown RBP10.98□□□□□ -0.65
LRCH3-219ENST00000494069 CXCL9Q07325 125 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 CWF19L2Q2TBE0 894 aaKnown RBP10.98□□□□□ -0.65
LRCH3-219ENST00000494069 LDHDQ86WU2 507 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 WDR63Q8IWG1 891 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 CCDC191Q8NCU4 936 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 KLRG1Q96E93 195 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 GPR101Q96P66 508 aaPredicted RBP10.98□□□□□ -0.65
LRCH3-219ENST00000494069 STK31Q9BXU1 1019 aa10.98□□□□□ -0.65
LRCH3-219ENST00000494069 CWC25Q9NXE8 425 aaPredicted RBP10.98□□□□□ -0.65
LRCH3-219ENST00000494069 RAD17O75943 681 aa10.97□□□□□ -0.65
LRCH3-219ENST00000494069 RPS8P62241 208 aaKnown RBP10.97□□□□□ -0.65
LRCH3-219ENST00000494069 KIAA2012Q0VF49 1180 aa10.97□□□□□ -0.65
LRCH3-219ENST00000494069 MAP1SQ66K74 1059 aaPredicted RBP10.97□□□□□ -0.65
LRCH3-219ENST00000494069 SUPT20HQ8NEM7 779 aa10.97□□□□□ -0.65
LRCH3-219ENST00000494069 POLLQ9UGP5 575 aa10.97□□□□□ -0.65
LRCH3-219ENST00000494069 ZNRF3Q9ULT6 936 aa10.97□□□□□ -0.65
LRCH3-219ENST00000494069 NSFL1CQ9UNZ2 370 aaKnown RBP10.97□□□□□ -0.65
LRCH3-219ENST00000494069 DUOX1Q9NRD9 1551 aa10.97□□□□□ -0.65
LRCH3-219ENST00000494069 LTBP1Q14766 1721 aa10.97□□□□□ -0.65
LRCH3-219ENST00000494069 SCN4AP35499 1836 aa10.96□□□□□ -0.65
LRCH3-219ENST00000494069 YDJCA8MPS7 323 aa10.96□□□□□ -0.65
LRCH3-219ENST00000494069 RIMBP2O15034 1052 aa10.96□□□□□ -0.65
LRCH3-219ENST00000494069 PDE8AO60658 829 aa10.96□□□□□ -0.65
LRCH3-219ENST00000494069 ITGBL1O95965 494 aaPredicted RBP10.96□□□□□ -0.65
LRCH3-219ENST00000494069 FMR1Q06787 632 aaKnown RBP eCLIP10.96□□□□□ -0.65
LRCH3-219ENST00000494069 FLIIQ13045 1269 aa10.96□□□□□ -0.65
LRCH3-219ENST00000494069 VPS33BQ9H267 617 aa10.96□□□□□ -0.65
LRCH3-219ENST00000494069 PASKQ96RG2 1323 aa10.95□□□□□ -0.66
LRCH3-219ENST00000494069 SHTN1A0MZ66 631 aa10.95□□□□□ -0.66
LRCH3-219ENST00000494069 NEURL1BA8MQ27 555 aa10.95□□□□□ -0.66
LRCH3-219ENST00000494069 GMPSP49915 693 aaPredicted RBP10.95□□□□□ -0.66
LRCH3-219ENST00000494069 TMC4Q7Z404 712 aa10.95□□□□□ -0.66
LRCH3-219ENST00000494069 JMYQ8N9B5 988 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms