RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZSCAN23Q3MJ62 389 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 FAM173BQ6P4H8 233 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 GAS2L3Q86XJ1 694 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 LRP2BPQ9P2M1 347 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 PPP1R1BQ9UD71 204 aaPredicted RBP12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 NIP7Q9Y221 180 aaKnown RBP eCLIP12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 PCDH11XQ9BZA7 1347 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 PCDH11YQ9BZA8 1340 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 LRRC24Q50LG9 513 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 ARHGEF28Q8N1W1 1705 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 TPM3P06753 285 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 DMTNQ08495 405 aa12.66□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 ZNF830Q96NB3 372 aaPredicted RBP12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 RAI14Q9P0K7 980 aa12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 AGLP35573 1532 aa12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 MAP2P11137 1827 aaKnown RBP12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 OVOS2A0A0J9YW53 1432 aa12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 IRX3P78415 501 aaPredicted RBP12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 OVOS2Q6IE36 1432 aa12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 MINDY4BA8MYZ0 360 aa12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 CAMK4Q16566 473 aa12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 TSC1Q92574 1164 aa12.65□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 EVI5LQ96CN4 794 aa12.64□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 PI16Q6UXB8 463 aa12.64□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 NOLC1Q14978 699 aaKnown RBP eCLIP12.64□□□□□ -0.394e-7■■■■□ 22.5
MSH5-SAPCD1-207ENST00000493662 SSH3Q8TE77 659 aa12.64□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 NUP133Q8WUM0 1156 aa12.64□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 CWC22Q9HCG8 908 aaKnown RBP12.64□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 USP25Q9UHP3 1055 aa12.64□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 IRS4O14654 1257 aaPredicted RBP12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 IGKV5-2P06315 115 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 RXRAP19793 462 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 PSMA5P28066 241 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 PTH1RQ03431 593 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 BRF1Q92994 677 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ZBTB1Q9Y2K1 713 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 SPATA31D1Q6ZQQ2 1576 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 CEP170BQ9Y4F5 1589 aaPredicted RBP12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 GOLGA6L19H0YKK7 550 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 SPATA31A3Q5VYP0 1347 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ANKRD18BA2A2Z9 1011 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 AK2P54819 239 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ATP6V1DQ9Y5K8 247 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 CDC42BPGQ6DT37 1551 aa12.63□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 A0A1B0GUL7 405 aa12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 TSPYL1Q9H0U9 437 aa12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 IQSEC2Q5JU85 1478 aa12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 TOM1O60784 492 aa12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 NOM1Q5C9Z4 860 aaKnown RBP12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 UTP14CQ5TAP6 766 aaKnown RBP12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 MIGA1Q8NAN2 632 aa12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 PIGBQ92521 554 aa12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 CWC15Q9P013 229 aaKnown RBP12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 IGHMBP2P38935 993 aaKnown RBP12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 RASEFQ8IZ41 740 aa12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 PLBD2Q8NHP8 589 aa12.62□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ZPR1O75312 459 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 GJB2P29033 226 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 TDO2P48775 406 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 RAB3GAP1Q15042 981 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 AIDAQ96BJ3 306 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ARGLU1Q9NWB6 273 aaPredicted RBP12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 CRB1P82279 1406 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 A0A0D9SFI3 127 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ATP2B3Q16720 1220 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 CCAR2Q8N163 923 aaKnown RBP12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 TRIM5Q9C035 493 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 USP31Q70CQ4 1352 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 KIAA1210Q9ULL0 1709 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 BECN2A8MW95 431 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 RBM25P49756 843 aaKnown RBP12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 TNNI3KQ59H18 835 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 PPP1R9BQ96SB3 815 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 TTC12Q9H892 705 aaPredicted RBP12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 FPGT-TNNI3KV9GXZ4 949 aa12.61□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 DHX16O60231 1041 aaKnown RBP12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ANTXR1Q9H6X2 564 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 LIMCH1Q9UPQ0 1083 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 HIP1O00291 1037 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ITGA6P23229 1130 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 NCBP3Q53F19 620 aaKnown RBP12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 RBSNQ9H1K0 784 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 SLC9C2Q5TAH2 1124 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 HOMER1Q86YM7 354 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 WDR17Q8IZU2 1322 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 MYRIPQ8NFW9 859 aa12.6□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 KCNQ2O43526 872 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 SASH1O94885 1247 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ADCK5Q3MIX3 580 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 LRSAM1Q6UWE0 723 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 DIP2AQ14689 1571 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 C1orf167Q5SNV9 1468 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 U2AF2P26368 475 aaKnown RBP eCLIP12.59□□□□□ -0.391e-7■■■■□ 25
MSH5-SAPCD1-207ENST00000493662 HLFQ16534 295 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 IL25Q9H293 177 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 PAG1Q9NWQ8 432 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ANKIB1Q9P2G1 1089 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 IFT172Q9UG01 1749 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 BRPF1P55201 1214 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms