RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 DGKZQ13574 1117 aa9.76□□□□□ -0.85
SCN1A-206ENST00000491429 DTWD1Q8N5C7 304 aa9.76□□□□□ -0.85
SCN1A-206ENST00000491429 TRPM4Q8TD43 1214 aa9.76□□□□□ -0.85
SCN1A-206ENST00000491429 IFT43Q96FT9 208 aa9.76□□□□□ -0.85
SCN1A-206ENST00000491429 QTRT2Q9H974 415 aaKnown RBP9.76□□□□□ -0.85
SCN1A-206ENST00000491429 FRRS1LQ9P0K9 344 aa9.76□□□□□ -0.85
SCN1A-206ENST00000491429 SASH3O75995 380 aa9.75□□□□□ -0.85
SCN1A-206ENST00000491429 NOS3P29474 1203 aa9.75□□□□□ -0.85
SCN1A-206ENST00000491429 PCSK7Q16549 785 aa9.75□□□□□ -0.85
SCN1A-206ENST00000491429 ELMSAN1Q6PJG2 1045 aa9.75□□□□□ -0.85
SCN1A-206ENST00000491429 WFDC8Q8IUA0 241 aa9.75□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L15C9J2P7 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L10C9JJH3 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L13C9JLJ4 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L12C9JPN9 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L11C9JVI0 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L21D6R901 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L18D6R9N7 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L22D6RA61 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L17D6RBQ6 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L19D6RCP7 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L20D6RJB6 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 ARSDP51689 593 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 USP17L24Q0WX57 530 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 PROSER2Q86WR7 435 aaPredicted RBP9.74□□□□□ -0.85
SCN1A-206ENST00000491429 ANKMY2Q8IV38 441 aa9.74□□□□□ -0.85
SCN1A-206ENST00000491429 MICAL2O94851 1124 aa9.73□□□□□ -0.85
SCN1A-206ENST00000491429 RARAP10276 462 aa9.73□□□□□ -0.85
SCN1A-206ENST00000491429 HFE2Q6ZVN8 426 aa9.73□□□□□ -0.85
SCN1A-206ENST00000491429 PPP1R12CQ9BZL4 782 aa9.73□□□□□ -0.85
SCN1A-206ENST00000491429 USP20Q9Y2K6 914 aa9.73□□□□□ -0.85
SCN1A-206ENST00000491429 DEAF1O75398 565 aaPredicted RBP9.72□□□□□ -0.85
SCN1A-206ENST00000491429 GPLD1P80108 840 aa9.72□□□□□ -0.85
SCN1A-206ENST00000491429 KRTAP1-3Q8IUG1 177 aa9.72□□□□□ -0.85
SCN1A-206ENST00000491429 MEGF10Q96KG7 1140 aa9.72□□□□□ -0.85
SCN1A-206ENST00000491429 SMG9Q9H0W8 520 aaKnown RBP9.72□□□□□ -0.85
SCN1A-206ENST00000491429 FAM196BA6NMK8 535 aa9.71□□□□□ -0.86
SCN1A-206ENST00000491429 TTC9Q92623 222 aa9.71□□□□□ -0.86
SCN1A-206ENST00000491429 WEE1P30291 646 aa9.7□□□□□ -0.86
SCN1A-206ENST00000491429 IGF2-ASQ6U949 168 aa9.7□□□□□ -0.86
SCN1A-206ENST00000491429 ARXQ96QS3 562 aa9.7□□□□□ -0.86
SCN1A-206ENST00000491429 KRTAP4-12Q9BQ66 201 aa9.7□□□□□ -0.86
SCN1A-206ENST00000491429 OPLAHO14841 1288 aa9.69□□□□□ -0.86
SCN1A-206ENST00000491429 EIF2AK2P19525 551 aaKnown RBP9.69□□□□□ -0.86
SCN1A-206ENST00000491429 C11orf91Q3C1V1 193 aa9.69□□□□□ -0.86
SCN1A-206ENST00000491429 CALR3Q96L12 384 aaKnown RBP9.69□□□□□ -0.86
SCN1A-206ENST00000491429 VRTNQ9H8Y1 702 aa9.68□□□□□ -0.86
SCN1A-206ENST00000491429 C11orf16Q9NQ32 467 aa9.68□□□□□ -0.86
SCN1A-206ENST00000491429 RTCBQ9Y3I0 505 aaKnown RBP9.68□□□□□ -0.86
SCN1A-206ENST00000491429 DLL1O00548 723 aa9.67□□□□□ -0.86
SCN1A-206ENST00000491429 FOXO3O43524 673 aa9.67□□□□□ -0.86
SCN1A-206ENST00000491429 LMOD1P29536 600 aaPredicted RBP9.67□□□□□ -0.86
SCN1A-206ENST00000491429 NRLP54845 237 aa9.67□□□□□ -0.86
SCN1A-206ENST00000491429 MYO19Q96H55 970 aa9.67□□□□□ -0.86
SCN1A-206ENST00000491429 LRFN2Q9ULH4 789 aa9.67□□□□□ -0.86
SCN1A-206ENST00000491429 RNF112Q9ULX5 631 aa9.67□□□□□ -0.86
SCN1A-206ENST00000491429 J3QW42 95 aa9.66□□□□□ -0.86
SCN1A-206ENST00000491429 PRR23CQ6ZRP0 262 aa9.66□□□□□ -0.86
SCN1A-206ENST00000491429 VTI1AQ96AJ9 217 aa9.66□□□□□ -0.86
SCN1A-206ENST00000491429 TLR7Q9NYK1 1049 aaKnown RBP9.66□□□□□ -0.86
SCN1A-206ENST00000491429 XYLBO75191 536 aa9.65□□□□□ -0.86
SCN1A-206ENST00000491429 ALX3O95076 343 aa9.65□□□□□ -0.86
SCN1A-206ENST00000491429 RGL4Q8IZJ4 473 aa9.65□□□□□ -0.86
SCN1A-206ENST00000491429 PLD4Q96BZ4 506 aa9.65□□□□□ -0.86
SCN1A-206ENST00000491429 EGFRP00533 1210 aa9.64□□□□□ -0.87
SCN1A-206ENST00000491429 ARID4AP29374 1257 aaPredicted RBP9.64□□□□□ -0.87
SCN1A-206ENST00000491429 LCE3BQ5TA77 95 aa9.64□□□□□ -0.87
SCN1A-206ENST00000491429 CMTR1Q8N1G2 835 aaKnown RBP9.64□□□□□ -0.87
SCN1A-206ENST00000491429 AKTIPQ9H8T0 292 aa9.64□□□□□ -0.87
SCN1A-206ENST00000491429 GDF6Q6KF10 455 aaPredicted RBP9.63□□□□□ -0.87
SCN1A-206ENST00000491429 TREML1Q86YW5 311 aa9.63□□□□□ -0.87
SCN1A-206ENST00000491429 DZIP1LQ8IYY4 767 aaKnown RBP9.63□□□□□ -0.87
SCN1A-206ENST00000491429 NSUN5Q96P11 429 aaKnown RBP9.63□□□□□ -0.87
SCN1A-206ENST00000491429 LOC102724428A0A0B4J2F2 783 aa9.62□□□□□ -0.87
SCN1A-206ENST00000491429 MMP20O60882 483 aa9.62□□□□□ -0.87
SCN1A-206ENST00000491429 SIK1P57059 783 aa9.62□□□□□ -0.87
SCN1A-206ENST00000491429 IL22RA1Q8N6P7 574 aa9.62□□□□□ -0.87
SCN1A-206ENST00000491429 KCNMB2Q9Y691 235 aa9.62□□□□□ -0.87
SCN1A-206ENST00000491429 F8W735 103 aaPredicted RBP9.61□□□□□ -0.87
SCN1A-206ENST00000491429 PSAPP07602 524 aa9.6□□□□□ -0.87
SCN1A-206ENST00000491429 FSTP19883 344 aa9.6□□□□□ -0.87
SCN1A-206ENST00000491429 COX20Q5RI15 118 aa9.6□□□□□ -0.87
SCN1A-206ENST00000491429 MRPL18Q9H0U6 180 aaKnown RBP9.6□□□□□ -0.87
SCN1A-206ENST00000491429 GHRHP01286 108 aa9.59□□□□□ -0.87
SCN1A-206ENST00000491429 FKBP5Q13451 457 aaPredicted RBP9.59□□□□□ -0.87
SCN1A-206ENST00000491429 SETDB1Q15047 1291 aa9.59□□□□□ -0.87
SCN1A-206ENST00000491429 TMEM130Q8N3G9 435 aa9.59□□□□□ -0.87
SCN1A-206ENST00000491429 FAM200AQ8TCP9 573 aa9.59□□□□□ -0.87
SCN1A-206ENST00000491429 TRIM33Q9UPN9 1127 aa9.59□□□□□ -0.87
SCN1A-206ENST00000491429 CDCA8Q53HL2 280 aa9.58□□□□□ -0.88
SCN1A-206ENST00000491429 CFAP70Q5T0N1 1121 aa9.58□□□□□ -0.88
SCN1A-206ENST00000491429 AGGF1Q8N302 714 aaeCLIP9.58□□□□□ -0.88
SCN1A-206ENST00000491429 HOXD8P13378 290 aaPredicted RBP9.57□□□□□ -0.88
SCN1A-206ENST00000491429 ETFBKMTQ8IXQ9 262 aa9.57□□□□□ -0.88
SCN1A-206ENST00000491429 PRIMPOLQ96LW4 560 aa9.57□□□□□ -0.88
SCN1A-206ENST00000491429 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.57□□□□□ -0.88
SCN1A-206ENST00000491429 SSTR4P31391 388 aa9.56□□□□□ -0.88
SCN1A-206ENST00000491429 SOX18P35713 384 aa9.56□□□□□ -0.88
SCN1A-206ENST00000491429 TRIP4Q15650 581 aaPredicted RBP9.56□□□□□ -0.88
SCN1A-206ENST00000491429 Q6ZS46 218 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms