RNA–Protein interactions for RNA: ENST00000491292.5

ERCC3-208, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, human

TSL 2

Gene ERCC3, Length 4,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERCC3-208	ENST00000491292	KIF24	Q5T7B8	1368 aa		11.45	□□□□□ -0.58
ERCC3-208	ENST00000491292	APP	P05067	770 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	SLC3A2	P08195	630 aa	Known RBP	11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	GYS2	P54840	703 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	PI4K2B	Q8TCG2	481 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	ZCCHC17	Q9NP64	241 aa	Known RBP	11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	SHPRH	Q149N8	1683 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	SSH3	Q8TE77	659 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	ZSWIM6	Q9HCJ5	1215 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	GSDMD	P57764	484 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	OLFM4	Q6UX06	510 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	CCDC191	Q8NCU4	936 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	CCDC102A	Q96A19	550 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	PGBD1	Q96JS3	809 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	XPO4	Q9C0E2	1151 aa	Known RBP	11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	TULP4	Q9NRJ4	1543 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	TCHH	Q07283	1943 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	KCNQ3	O43525	872 aa		11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	IRX5	P78411	483 aa	Predicted RBP	11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	KARS	Q15046	597 aa	Known RBP	11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	RBM33	Q96EV2	1170 aa	Known RBP	11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	SEC62	Q99442	399 aa	Known RBP	11.44	□□□□□ -0.58
ERCC3-208	ENST00000491292	KIF2A	O00139	706 aa	Predicted RBP	11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	CTIF	O43310	598 aa	Known RBP	11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	SLFN14	P0C7P3	912 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	TOP1	P11387	765 aa	Known RBP	11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	RPS6KB1	P23443	525 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	HNRNPH2	P55795	449 aa	Known RBP	11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	TDRD7	Q8NHU6	1098 aa	Known RBP	11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	TAF6L	Q9Y6J9	622 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	KIF1B	O60333	1816 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	QRICH2	Q9H0J4	1663 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	LEKR1	Q6ZMV7	388 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	AK7	Q96M32	723 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	USP28	Q96RU2	1077 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	FUCA2	Q9BTY2	467 aa		11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292	TLR7	Q9NYK1	1049 aa	Known RBP	11.43	□□□□□ -0.58
ERCC3-208	ENST00000491292		A0A0G2JS52	829 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	PTPDC1	A2A3K4	754 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	CTAGE5	O15320	804 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	UBASH3A	P57075	661 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	EVC	P57679	992 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	HSP90B2P	Q58FF3	399 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	CWC15	Q9P013	229 aa	Known RBP	11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	POGZ	Q7Z3K3	1410 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	PNPLA6	Q8IY17	1366 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	DDX58	O95786	925 aa	Known RBP	11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	CASQ1	P31415	396 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	COL9A3	Q14050	684 aa	Predicted RBP	11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	FAM193A	P78312	1265 aa		11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
ERCC3-208	ENST00000491292	KRT32	Q14532	448 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	LGR6	Q9HBX8	967 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	PUF60	Q9UHX1	559 aa	Known RBP	11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	CLCN6	P51797	869 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	KLHL10	Q6JEL2	608 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	CCDC82	Q8N4S0	544 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	IL17RE	Q8NFR9	667 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	MRPS27	Q92552	414 aa	Known RBP	11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	EAF2	Q96CJ1	260 aa	Predicted RBP	11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	C8orf76	Q96K31	380 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	SNRK	Q9NRH2	765 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	SSH2	Q76I76	1423 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	GOLIM4	O00461	696 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	CHGB	P05060	677 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	KIAA0232	Q92628	1395 aa		11.41	□□□□□ -0.58
ERCC3-208	ENST00000491292	ARHGEF40	Q8TER5	1519 aa		11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	RALYL	Q86SE5	291 aa	Known RBP	11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	PLA2G4D	Q86XP0	818 aa		11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	OAS2	P29728	719 aa	Known RBP	11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	NFXL1	Q6ZNB6	911 aa		11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	TMEM51	Q9NW97	253 aa		11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	HSP90AB3P	Q58FF7	597 aa		11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	TTC41P	Q6P2S7	1318 aa		11.4	□□□□□ -0.58
ERCC3-208	ENST00000491292	ATP5J2-PTCD1	G3V325	749 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	PTCD1	O75127	700 aa	Known RBP	11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	MYD88	Q99836	296 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	BICC1	Q9H694	974 aa	Known RBP	11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	ARFGAP3	Q9NP61	516 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	ANKRD65	E5RJM6	399 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	CAVIN2	O95810	425 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	FAM160A1	Q05DH4	1040 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	DPCR1	Q3MIW9	517 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	SLFNL1	Q499Z3	407 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	TAF7L	Q5H9L4	462 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	CCDC150	Q8NCX0	1101 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	LRRN4CL	Q8ND94	238 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	LZTFL1	Q9NQ48	299 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	RSPH14	Q9UHP6	348 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	ZFYVE16	Q7Z3T8	1539 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	TET3	O43151	1660 aa		11.39	□□□□□ -0.59
ERCC3-208	ENST00000491292	PPP1R13B	Q96KQ4	1090 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms