RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 CCDC150Q8NCX0 1101 aa14.89□□□□□ -0.03
SHOX2-205ENST00000490689 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.89□□□□□ -0.03
SHOX2-205ENST00000490689 GABPB1Q06547 395 aaPredicted RBP14.89□□□□□ -0.03
SHOX2-205ENST00000490689 UBE3BQ7Z3V4 1068 aa14.89□□□□□ -0.03
SHOX2-205ENST00000490689 CNNM3Q8NE01 707 aa14.89□□□□□ -0.03
SHOX2-205ENST00000490689 NUP133Q8WUM0 1156 aa14.89□□□□□ -0.03
SHOX2-205ENST00000490689 ARFGAP3Q9NP61 516 aa14.89□□□□□ -0.03
SHOX2-205ENST00000490689 MRVI1Q9Y6F6 885 aa14.89□□□□□ -0.03
SHOX2-205ENST00000490689 EPB41L2O43491 1005 aaKnown RBP14.88□□□□□ -0.03
SHOX2-205ENST00000490689 ARID5BQ14865 1188 aa14.88□□□□□ -0.03
SHOX2-205ENST00000490689 KARSQ15046 597 aaKnown RBP14.88□□□□□ -0.03
SHOX2-205ENST00000490689 ZFYVE9O95405 1425 aa14.88□□□□□ -0.03
SHOX2-205ENST00000490689 IBSPP21815 317 aaPredicted RBP14.88□□□□□ -0.03
SHOX2-205ENST00000490689 UTP14CQ5TAP6 766 aaKnown RBP14.88□□□□□ -0.03
SHOX2-205ENST00000490689 HYPKQ9NX55 129 aa14.88□□□□□ -0.03
SHOX2-205ENST00000490689 PTPDC1A2A3K4 754 aa14.88□□□□□ -0.03
SHOX2-205ENST00000490689 CCDC158Q5M9N0 1113 aa14.88□□□□□ -0.03
SHOX2-205ENST00000490689 SMARCE1Q969G3 411 aa14.88□□□□□ -0.03
SHOX2-205ENST00000490689 RGS12O14924 1447 aa14.88□□□□□ -0.03
SHOX2-205ENST00000490689 ARHGEF5Q12774 1597 aa14.87□□□□□ -0.03
SHOX2-205ENST00000490689 DHX8Q14562 1220 aaKnown RBP14.87□□□□□ -0.03
SHOX2-205ENST00000490689 CARD6Q9BX69 1037 aa14.87□□□□□ -0.03
SHOX2-205ENST00000490689 HMG20BQ9P0W2 317 aa14.87□□□□□ -0.03
SHOX2-205ENST00000490689 ABCC1P33527 1531 aa14.87□□□□□ -0.03
SHOX2-205ENST00000490689 NPATQ14207 1427 aa14.87□□□□□ -0.03
SHOX2-205ENST00000490689 IFIT1P09914 478 aaKnown RBP14.87□□□□□ -0.03
SHOX2-205ENST00000490689 IMMTQ16891 758 aaKnown RBP14.87□□□□□ -0.03
SHOX2-205ENST00000490689 CCDC191Q8NCU4 936 aa14.87□□□□□ -0.03
SHOX2-205ENST00000490689 MAP3K19Q56UN5 1328 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 CEP126Q9P2H0 1117 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 TTC41PQ6P2S7 1318 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 KIF5CO60282 957 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 ZNF853P0CG23 659 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 A0A087WZG4 1122 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 IDH1O75874 414 aaKnown RBP14.86□□□□□ -0.03
SHOX2-205ENST00000490689 RPS6KB1P23443 525 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 SYKP43405 635 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 EVCP57679 992 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 OSBPL3Q9H4L5 887 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 RAI14Q9P0K7 980 aa14.86□□□□□ -0.03
SHOX2-205ENST00000490689 PUF60Q9UHX1 559 aaKnown RBP14.86□□□□□ -0.03
SHOX2-205ENST00000490689 NCBP1Q09161 790 aaKnown RBP14.85□□□□□ -0.03
SHOX2-205ENST00000490689 TSPYL1Q9H0U9 437 aa14.85□□□□□ -0.03
SHOX2-205ENST00000490689 YTHDC2Q9H6S0 1430 aaKnown RBP14.85□□□□□ -0.03
SHOX2-205ENST00000490689 HMGB1P09429 215 aaKnown RBP14.85□□□□□ -0.03
SHOX2-205ENST00000490689 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.85□□□□□ -0.03
SHOX2-205ENST00000490689 KLF18A0A0U1RQI7 1052 aa14.85□□□□□ -0.03
SHOX2-205ENST00000490689 MICU3Q86XE3 530 aa14.85□□□□□ -0.03
SHOX2-205ENST00000490689 LZTFL1Q9NQ48 299 aa14.85□□□□□ -0.03
SHOX2-205ENST00000490689 TTC37Q6PGP7 1564 aa14.85□□□□□ -0.03
SHOX2-205ENST00000490689 GRM8O00222 908 aa14.85□□□□□ -0.03
SHOX2-205ENST00000490689 LRRC8AQ8IWT6 810 aa14.85□□□□□ -0.03
SHOX2-205ENST00000490689 CTNNA3Q9UI47 895 aa14.85□□□□□ -0.03
SHOX2-205ENST00000490689 KRBA2Q6ZNG9 492 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 LSG1Q9H089 658 aaKnown RBP14.84□□□□□ -0.03
SHOX2-205ENST00000490689 ZBTB22O15209 634 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 ZC3H6P61129 1189 aaKnown RBP14.84□□□□□ -0.03
SHOX2-205ENST00000490689 PTPN21Q16825 1174 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 NEK11Q8NG66 645 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 FTOQ9C0B1 505 aaKnown RBP eCLIP14.84□□□□□ -0.03
SHOX2-205ENST00000490689 RSPH14Q9UHP6 348 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 NCOA3Q9Y6Q9 1424 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 SPTLC2O15270 562 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 ZSCAN20P17040 1043 aaPredicted RBP14.84□□□□□ -0.03
SHOX2-205ENST00000490689 FAM160A1Q05DH4 1040 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 SLC39A6Q13433 755 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 HSP90AB3PQ58FF7 597 aa14.84□□□□□ -0.03
SHOX2-205ENST00000490689 CLASP1Q7Z460 1538 aa14.83□□□□□ -0.03
SHOX2-205ENST00000490689 CAPN2P17655 700 aa14.83□□□□□ -0.03
SHOX2-205ENST00000490689 TRIM22Q8IYM9 498 aa14.83□□□□□ -0.04
SHOX2-205ENST00000490689 TXLNBQ8N3L3 684 aa14.83□□□□□ -0.04
SHOX2-205ENST00000490689 XPO4Q9C0E2 1151 aaKnown RBP14.83□□□□□ -0.04
SHOX2-205ENST00000490689 DEF6Q9H4E7 631 aa14.83□□□□□ -0.04
SHOX2-205ENST00000490689 DACH1Q9UI36 760 aa14.83□□□□□ -0.04
SHOX2-205ENST00000490689 ADCY10Q96PN6 1610 aa14.83□□□□□ -0.04
SHOX2-205ENST00000490689 VPS18Q9P253 973 aa14.83□□□□□ -0.04
SHOX2-205ENST00000490689 RXRAP19793 462 aa14.82□□□□□ -0.04
SHOX2-205ENST00000490689 ZNF710Q8N1W2 664 aa14.82□□□□□ -0.04
SHOX2-205ENST00000490689 BICC1Q9H694 974 aaKnown RBP14.82□□□□□ -0.04
SHOX2-205ENST00000490689 GPATCH11Q8N954 259 aa14.82□□□□□ -0.04
SHOX2-205ENST00000490689 SSH3Q8TE77 659 aa14.82□□□□□ -0.04
SHOX2-205ENST00000490689 CENPHQ9H3R5 247 aa14.82□□□□□ -0.04
SHOX2-205ENST00000490689 A0A0D9SFI3 127 aa14.82□□□□□ -0.04
SHOX2-205ENST00000490689 CCDC57Q2TAC2 916 aa14.82□□□□□ -0.04
SHOX2-205ENST00000490689 MCMDC2Q4G0Z9 681 aa14.82□□□□□ -0.04
SHOX2-205ENST00000490689 RHOXF2BP0C7M4 288 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 CCDC102BQ68D86 513 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 RHOXF2Q9BQY4 288 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 CRACR2AQ9BSW2 395 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 TBC1D2BQ9UPU7 963 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 ZSWIM6Q9HCJ5 1215 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.81□□□□□ -0.04
SHOX2-205ENST00000490689 MARCH6O60337 910 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 SART3Q15020 963 aaKnown RBP14.81□□□□□ -0.04
SHOX2-205ENST00000490689 C11orf57Q6ZUT1 292 aaPredicted RBP14.81□□□□□ -0.04
SHOX2-205ENST00000490689 KCNF1Q9H3M0 494 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 ZNF213O14771 459 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 KSR2Q6VAB6 950 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 USP28Q96RU2 1077 aa14.81□□□□□ -0.04
SHOX2-205ENST00000490689 CNNM1Q9NRU3 951 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms