RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 SLX4Q8IY92 1834 aa13.69□□□□□ -0.22
VPS13D-210ENST00000489961 GRIN3BO60391 1043 aa13.69□□□□□ -0.22
VPS13D-210ENST00000489961 NBPF7P0C2Y1 421 aaPredicted RBP13.69□□□□□ -0.22
VPS13D-210ENST00000489961 YBX3P16989 372 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS13D-210ENST00000489961 CTSWP56202 376 aa13.69□□□□□ -0.22
VPS13D-210ENST00000489961 PRPF40BQ6NWY9 871 aaKnown RBP13.69□□□□□ -0.22
VPS13D-210ENST00000489961 USP44Q9H0E7 712 aa13.69□□□□□ -0.22
VPS13D-210ENST00000489961 HDAC5Q9UQL6 1122 aa13.69□□□□□ -0.22
VPS13D-210ENST00000489961 UBTFL1P0CB47 393 aaPredicted RBP13.68□□□□□ -0.22
VPS13D-210ENST00000489961 TMEM57Q8N5G2 664 aa13.68□□□□□ -0.22
VPS13D-210ENST00000489961 TTLL11Q8NHH1 800 aa13.68□□□□□ -0.22
VPS13D-210ENST00000489961 SRCAPQ6ZRS2 3230 aa13.68□□□□□ -0.22
VPS13D-210ENST00000489961 PLIN1O60240 522 aa13.67□□□□□ -0.22
VPS13D-210ENST00000489961 GNAI3P08754 354 aa13.67□□□□□ -0.22
VPS13D-210ENST00000489961 GRAPQ13588 217 aa13.67□□□□□ -0.22
VPS13D-210ENST00000489961 GRAPLQ8TC17 118 aaPredicted RBP13.67□□□□□ -0.22
VPS13D-210ENST00000489961 SUCLG2Q96I99 432 aa13.67□□□□□ -0.22
VPS13D-210ENST00000489961 CCDC85AQ96PX6 553 aaPredicted RBP13.67□□□□□ -0.22
VPS13D-210ENST00000489961 TAF1P21675 1872 aa13.67□□□□□ -0.22
VPS13D-210ENST00000489961 PPEF1O14829 653 aaPredicted RBP13.66□□□□□ -0.22
VPS13D-210ENST00000489961 C21orf2O43822 256 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 BBOX1O75936 387 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 CSF1RP07333 972 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 RLBP1P12271 317 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 FOXO4P98177 505 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 SOGA3Q5TF21 947 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 ITPRIPQ8IWB1 547 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 TMX4Q9H1E5 349 aaPredicted RBP13.66□□□□□ -0.22
VPS13D-210ENST00000489961 ZNF219Q9P2Y4 722 aaPredicted RBP13.66□□□□□ -0.22
VPS13D-210ENST00000489961 CHMP3Q9Y3E7 222 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 RTL9Q8NET4 1388 aa13.66□□□□□ -0.22
VPS13D-210ENST00000489961 PDE3AQ14432 1141 aa13.65□□□□□ -0.22
VPS13D-210ENST00000489961 LMBR1LQ6UX01 489 aa13.65□□□□□ -0.22
VPS13D-210ENST00000489961 TMC4Q7Z404 712 aa13.65□□□□□ -0.22
VPS13D-210ENST00000489961 PANK1Q8TE04 598 aa13.65□□□□□ -0.22
VPS13D-210ENST00000489961 CDC5LQ99459 802 aaKnown RBP13.65□□□□□ -0.22
VPS13D-210ENST00000489961 MEIS3Q99687 375 aa13.65□□□□□ -0.22
VPS13D-210ENST00000489961 GREM2Q9H772 168 aa13.65□□□□□ -0.22
VPS13D-210ENST00000489961 RPS8P62241 208 aaKnown RBP13.64□□□□□ -0.23
VPS13D-210ENST00000489961 FAM161AQ3B820 660 aa13.64□□□□□ -0.23
VPS13D-210ENST00000489961 CCDC93Q567U6 631 aa13.64□□□□□ -0.23
VPS13D-210ENST00000489961 EPHA10Q5JZY3 1008 aa13.64□□□□□ -0.23
VPS13D-210ENST00000489961 CC2D2BQ6DHV5 1058 aa13.64□□□□□ -0.23
VPS13D-210ENST00000489961 ARHGAP27Q6ZUM4 889 aa13.64□□□□□ -0.23
VPS13D-210ENST00000489961 ANKRD18AQ8IVF6 992 aa13.64□□□□□ -0.23
VPS13D-210ENST00000489961 CELF1Q92879 486 aaKnown RBP13.64□□□□□ -0.23
VPS13D-210ENST00000489961 KAZALD1Q96I82 304 aa13.64□□□□□ -0.23
VPS13D-210ENST00000489961 BICC1Q9H694 974 aaKnown RBP13.64□□□□□ -0.23
VPS13D-210ENST00000489961 SEC31BQ9NQW1 1179 aa13.64□□□□□ -0.23
VPS13D-210ENST00000489961 SPEF2Q9C093 1822 aa13.63□□□□□ -0.23
VPS13D-210ENST00000489961 ANKRD18BA2A2Z9 1011 aa13.63□□□□□ -0.23
VPS13D-210ENST00000489961 ITGA6P23229 1130 aa13.63□□□□□ -0.23
VPS13D-210ENST00000489961 RRP1P56182 461 aaKnown RBP13.63□□□□□ -0.23
VPS13D-210ENST00000489961 IFIT5Q13325 482 aaKnown RBP13.63□□□□□ -0.23
VPS13D-210ENST00000489961 MVPQ14764 893 aaKnown RBP13.63□□□□□ -0.23
VPS13D-210ENST00000489961 CCDC57Q2TAC2 916 aa13.63□□□□□ -0.23
VPS13D-210ENST00000489961 RABL6Q3YEC7 729 aaPredicted RBP13.63□□□□□ -0.23
VPS13D-210ENST00000489961 GRIPAP1Q4V328 841 aa13.63□□□□□ -0.23
VPS13D-210ENST00000489961 C7orf43Q8WVR3 580 aa13.63□□□□□ -0.23
VPS13D-210ENST00000489961 ATP6V0A2Q9Y487 856 aa13.63□□□□□ -0.23
VPS13D-210ENST00000489961 FER1L6Q2WGJ9 1857 aa13.63□□□□□ -0.23
VPS13D-210ENST00000489961 GNAI2P04899 355 aa13.62□□□□□ -0.23
VPS13D-210ENST00000489961 IGHMBP2P38935 993 aaKnown RBP13.62□□□□□ -0.23
VPS13D-210ENST00000489961 TAF7LQ5H9L4 462 aa13.62□□□□□ -0.23
VPS13D-210ENST00000489961 SP8Q8IXZ3 490 aa13.62□□□□□ -0.23
VPS13D-210ENST00000489961 RTKN2Q8IZC4 609 aa13.62□□□□□ -0.23
VPS13D-210ENST00000489961 ANKRD44Q8N8A2 993 aa13.62□□□□□ -0.23
VPS13D-210ENST00000489961 CHMP4BQ9H444 224 aaKnown RBP13.62□□□□□ -0.23
VPS13D-210ENST00000489961 DDX19BQ9UMR2 479 aa13.62□□□□□ -0.23
VPS13D-210ENST00000489961 COG6Q9Y2V7 657 aa13.62□□□□□ -0.23
VPS13D-210ENST00000489961 LRRFIP2Q9Y608 721 aaKnown RBP13.62□□□□□ -0.23
VPS13D-210ENST00000489961 LRRC37AA6NMS7 1700 aa13.61□□□□□ -0.23
VPS13D-210ENST00000489961 COL4A1P02462 1669 aa13.61□□□□□ -0.23
VPS13D-210ENST00000489961 ZBTB7BO15156 539 aaPredicted RBP13.61□□□□□ -0.23
VPS13D-210ENST00000489961 MPHOSPH8Q99549 860 aa13.61□□□□□ -0.23
VPS13D-210ENST00000489961 CHD4Q14839 1912 aa13.6□□□□□ -0.23
VPS13D-210ENST00000489961 C20orf194Q5TEA3 1177 aa13.6□□□□□ -0.23
VPS13D-210ENST00000489961 OLFM4Q6UX06 510 aa13.6□□□□□ -0.23
VPS13D-210ENST00000489961 TAOK3Q9H2K8 898 aa13.6□□□□□ -0.23
VPS13D-210ENST00000489961 LTBP3Q9NS15 1303 aa13.6□□□□□ -0.23
VPS13D-210ENST00000489961 FKBP4Q02790 459 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS13D-210ENST00000489961 MPNDQ8N594 471 aa13.59□□□□□ -0.23
VPS13D-210ENST00000489961 BSDC1Q9NW68 430 aaPredicted RBP13.59□□□□□ -0.23
VPS13D-210ENST00000489961 SBF1O95248 1867 aa13.59□□□□□ -0.23
VPS13D-210ENST00000489961 NFKBIEO00221 500 aa13.58□□□□□ -0.24
VPS13D-210ENST00000489961 RASSF7Q02833 373 aa13.58□□□□□ -0.24
VPS13D-210ENST00000489961 DPP8Q6V1X1 898 aaPredicted RBP13.58□□□□□ -0.24
VPS13D-210ENST00000489961 SUPT20HQ8NEM7 779 aa13.58□□□□□ -0.24
VPS13D-210ENST00000489961 PSMD1Q99460 953 aa13.58□□□□□ -0.24
VPS13D-210ENST00000489961 SUPT16HQ9Y5B9 1047 aaKnown RBP13.58□□□□□ -0.24
VPS13D-210ENST00000489961 CCDC88AQ3V6T2 1871 aa13.58□□□□□ -0.24
VPS13D-210ENST00000489961 SNED1Q8TER0 1413 aa13.57□□□□□ -0.24
VPS13D-210ENST00000489961 LDHAL6AQ6ZMR3 332 aa13.57□□□□□ -0.24
VPS13D-210ENST00000489961 ZNF594Q96JF6 807 aaPredicted RBP13.57□□□□□ -0.24
VPS13D-210ENST00000489961 CNNM1Q9NRU3 951 aa13.57□□□□□ -0.24
VPS13D-210ENST00000489961 MINPP1Q9UNW1 487 aa13.57□□□□□ -0.24
VPS13D-210ENST00000489961 NSFL1CQ9UNZ2 370 aaKnown RBP13.57□□□□□ -0.24
VPS13D-210ENST00000489961 SRGAP3O43295 1099 aa13.56□□□□□ -0.24
VPS13D-210ENST00000489961 LMNB1P20700 586 aa13.56□□□□□ -0.24
VPS13D-210ENST00000489961 GPSM2P81274 684 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms