RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 CLN3Q13286 438 aa9.42□□□□□ -0.9
PRPF40A-210ENST00000489741 LCE2CQ5TA81 110 aa9.42□□□□□ -0.9
PRPF40A-210ENST00000489741 PLPP7Q8NBV4 271 aa9.42□□□□□ -0.9
PRPF40A-210ENST00000489741 CLUAP1Q96AJ1 413 aa9.42□□□□□ -0.9
PRPF40A-210ENST00000489741 RAB6BQ9NRW1 208 aa9.42□□□□□ -0.9
PRPF40A-210ENST00000489741 NRXN1Q9ULB1 1477 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 SPATA31A3Q5VYP0 1347 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 POM121CA8CG34 1229 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 MAP7D1Q3KQU3 841 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 SLC27A3Q5K4L6 730 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 CFAP70Q5T0N1 1121 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 PRICKLE2Q7Z3G6 844 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 CCDC155Q8N6L0 562 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 ALG2Q9H553 416 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 EP400Q96L91 3159 aa9.41□□□□□ -0.9
PRPF40A-210ENST00000489741 ERBB4Q15303 1308 aa9.4□□□□□ -0.9
PRPF40A-210ENST00000489741 PIK3CDO00329 1044 aa9.4□□□□□ -0.9
PRPF40A-210ENST00000489741 GPC1P35052 558 aa9.4□□□□□ -0.9
PRPF40A-210ENST00000489741 KRT28Q7Z3Y7 464 aa9.4□□□□□ -0.9
PRPF40A-210ENST00000489741 COL22A1Q8NFW1 1626 aaPredicted RBP9.4□□□□□ -0.9
PRPF40A-210ENST00000489741 GMPRP36959 345 aa9.39□□□□□ -0.91
PRPF40A-210ENST00000489741 DHX57Q6P158 1386 aaKnown RBP9.38□□□□□ -0.91
PRPF40A-210ENST00000489741 SKIP12755 728 aa9.38□□□□□ -0.91
PRPF40A-210ENST00000489741 RHOQP17081 205 aa9.38□□□□□ -0.91
PRPF40A-210ENST00000489741 UNC5CLQ8IV45 518 aa9.38□□□□□ -0.91
PRPF40A-210ENST00000489741 CNKSR1Q969H4 720 aa9.38□□□□□ -0.91
PRPF40A-210ENST00000489741 PRAM1Q96QH2 718 aa9.38□□□□□ -0.91
PRPF40A-210ENST00000489741 ATAD2Q6PL18 1390 aa9.37□□□□□ -0.91
PRPF40A-210ENST00000489741 SLIT2O94813 1529 aa9.37□□□□□ -0.91
PRPF40A-210ENST00000489741 SLC35F4A4IF30 521 aa9.37□□□□□ -0.91
PRPF40A-210ENST00000489741 WIPF1O43516 503 aa9.37□□□□□ -0.91
PRPF40A-210ENST00000489741 SBNO1A3KN83 1393 aa9.37□□□□□ -0.91
PRPF40A-210ENST00000489741 RAB3GAP2Q9H2M9 1393 aa9.37□□□□□ -0.91
PRPF40A-210ENST00000489741 IL2RAP01589 272 aa9.36□□□□□ -0.91
PRPF40A-210ENST00000489741 VSIG8P0DPA2 414 aa9.36□□□□□ -0.91
PRPF40A-210ENST00000489741 PSME1Q06323 249 aa9.36□□□□□ -0.91
PRPF40A-210ENST00000489741 HDGFL1Q5TGJ6 251 aa9.36□□□□□ -0.91
PRPF40A-210ENST00000489741 ESYT1Q9BSJ8 1104 aa9.36□□□□□ -0.91
PRPF40A-210ENST00000489741 IFT172Q9UG01 1749 aa9.36□□□□□ -0.91
PRPF40A-210ENST00000489741 ITGA6P23229 1130 aa9.35□□□□□ -0.91
PRPF40A-210ENST00000489741 GTF2E1P29083 439 aaPredicted RBP9.35□□□□□ -0.91
PRPF40A-210ENST00000489741 EML3Q32P44 896 aa9.35□□□□□ -0.91
PRPF40A-210ENST00000489741 NFATC2IPQ8NCF5 419 aa9.35□□□□□ -0.91
PRPF40A-210ENST00000489741 ADAMTS19Q8TE59 1207 aa9.35□□□□□ -0.91
PRPF40A-210ENST00000489741 KNDC1Q76NI1 1749 aa9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 SENP3-EIF4A1A0A087X0R7 540 aa9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 CDC14CA4D256 554 aa9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 FAM83GA6ND36 823 aa9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 STAU1O95793 577 aaKnown RBP9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 CENPCQ03188 943 aa9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 POU4F2Q12837 409 aa9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 SAFB2Q14151 953 aaKnown RBP eCLIP9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 GRIP2Q9C0E4 1043 aa9.34□□□□□ -0.91
PRPF40A-210ENST00000489741 TNS3Q68CZ2 1445 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 ANKARQ7Z5J8 1434 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 DLC1Q96QB1 1528 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 USP17L5A8MUK1 530 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 INSM1Q01101 510 aaPredicted RBP9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 VPS72Q15906 364 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 ETNK1Q9HBU6 452 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 POGKQ9P215 609 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 TRAK1Q9UPV9 953 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 FMN2Q9NZ56 1722 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 RALGAPBQ86X10 1494 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 ADGRB1O14514 1584 aa9.33□□□□□ -0.92
PRPF40A-210ENST00000489741 PRR36Q9H6K5 1346 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 A6NJR5 290 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 NCOA4Q13772 614 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 NBPF10Q6P3W6 841 aaKnown RBP9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 TAS1R3Q7RTX0 852 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 DEPDC4Q8N2C3 294 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 NBPF15Q8N660 670 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 PMFBP1Q8TBY8 1022 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 DCAF11Q8TEB1 546 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 XAGE2Q96GT9 111 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 ZSCAN10Q96SZ4 725 aaPredicted RBP9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 NOD1Q9Y239 953 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 ARHGEF10O15013 1369 aa9.32□□□□□ -0.92
PRPF40A-210ENST00000489741 WASLO00401 505 aaPredicted RBP9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 LZTS3O60299 673 aaPredicted RBP9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 GDF10P55107 478 aa9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 TLR1Q15399 786 aa9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 GNASQ5JWF2 1037 aa9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 TMEM214Q6NUQ4 689 aaKnown RBP9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 VWA5B2Q8N398 1253 aa9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 GLMNQ92990 594 aa9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 HIRIP3Q9BW71 556 aaPredicted RBP9.31□□□□□ -0.92
PRPF40A-210ENST00000489741 KIF1AQ12756 1690 aa9.3□□□□□ -0.92
PRPF40A-210ENST00000489741 GLI3P10071 1580 aa9.3□□□□□ -0.92
PRPF40A-210ENST00000489741 SPATA31C2B4DYI2 1134 aa9.3□□□□□ -0.92
PRPF40A-210ENST00000489741 SCNN1DP51172 638 aa9.3□□□□□ -0.92
PRPF40A-210ENST00000489741 RIPOR1Q6ZS17 1223 aa9.3□□□□□ -0.92
PRPF40A-210ENST00000489741 SV2AQ7L0J3 742 aa9.3□□□□□ -0.92
PRPF40A-210ENST00000489741 NANOS1Q8WY41 292 aaKnown RBP9.3□□□□□ -0.92
PRPF40A-210ENST00000489741 TIMMDC1Q9NPL8 285 aa9.3□□□□□ -0.92
PRPF40A-210ENST00000489741 INHAP05111 366 aa9.29□□□□□ -0.92
PRPF40A-210ENST00000489741 GTF2IP78347 998 aa9.29□□□□□ -0.92
PRPF40A-210ENST00000489741 TBC1D9Q6ZT07 1266 aa9.29□□□□□ -0.92
PRPF40A-210ENST00000489741 UCN2Q96RP3 112 aa9.29□□□□□ -0.92
PRPF40A-210ENST00000489741 GAS2L1Q99501 681 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms