RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 PSMG3-AS1Q96PY0 264 aa7.29□□□□□ -1.24
ATG4A-208ENST00000489247 ZFAND3Q9H8U3 227 aa7.29□□□□□ -1.24
ATG4A-208ENST00000489247 PPP4R2Q9NY27 417 aa7.29□□□□□ -1.24
ATG4A-208ENST00000489247 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.29□□□□□ -1.24
ATG4A-208ENST00000489247 LRRC7Q96NW7 1537 aa7.28□□□□□ -1.24
ATG4A-208ENST00000489247 MON2Q7Z3U7 1717 aa7.28□□□□□ -1.24
ATG4A-208ENST00000489247 TIMP2P16035 220 aa7.28□□□□□ -1.24
ATG4A-208ENST00000489247 WDR4P57081 412 aaKnown RBP7.28□□□□□ -1.24
ATG4A-208ENST00000489247 SLFN5Q08AF3 891 aa7.28□□□□□ -1.24
ATG4A-208ENST00000489247 DUSP27Q5VZP5 1158 aa7.28□□□□□ -1.24
ATG4A-208ENST00000489247 RUNDC1Q96C34 613 aa7.28□□□□□ -1.24
ATG4A-208ENST00000489247 ITPKCQ96DU7 683 aa7.28□□□□□ -1.24
ATG4A-208ENST00000489247 CCDC97Q96F63 343 aaPredicted RBP7.28□□□□□ -1.24
ATG4A-208ENST00000489247 AMOTL2Q9Y2J4 779 aa7.28□□□□□ -1.24
ATG4A-208ENST00000489247 CDK12Q9NYV4 1490 aaPredicted RBP7.28□□□□□ -1.24
ATG4A-208ENST00000489247 RIMS1Q86UR5 1692 aaKnown RBP7.28□□□□□ -1.24
ATG4A-208ENST00000489247 OVOS2A0A0J9YW53 1432 aa7.27□□□□□ -1.24
ATG4A-208ENST00000489247 OVOS2Q6IE36 1432 aa7.27□□□□□ -1.24
ATG4A-208ENST00000489247 ESPNB1AK53 854 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 E9PSI1 815 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 RRP1P56182 461 aaKnown RBP7.27□□□□□ -1.25
ATG4A-208ENST00000489247 NBPF20Q3BBV1 942 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 PPP1R26Q5T8A7 1209 aaPredicted RBP7.27□□□□□ -1.25
ATG4A-208ENST00000489247 ANKLE2Q86XL3 938 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 KRTAP1-3Q8IUG1 177 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 CCDC116Q8IYX3 515 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 GLMNQ92990 594 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 CALR3Q96L12 384 aaKnown RBP7.27□□□□□ -1.25
ATG4A-208ENST00000489247 TMPRSS4Q9NRS4 437 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 RCAN3Q9UKA8 241 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 CDV3Q9UKY7 258 aaKnown RBP7.27□□□□□ -1.25
ATG4A-208ENST00000489247 USP31Q70CQ4 1352 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 NRKQ7Z2Y5 1582 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 USP6P35125 1406 aa7.27□□□□□ -1.25
ATG4A-208ENST00000489247 NKTRP30414 1462 aaKnown RBP7.26□□□□□ -1.25
ATG4A-208ENST00000489247 APAF1O14727 1248 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 ZIC2O95409 532 aaPredicted RBP7.26□□□□□ -1.25
ATG4A-208ENST00000489247 WASHC4Q2M389 1173 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 WDR63Q8IWG1 891 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 SLC26A8Q96RN1 970 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 PLEKHF1Q96S99 279 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 GGNBP2Q9H3C7 697 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 SERPINA10Q9UK55 444 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 TTC21BQ7Z4L5 1316 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 TTC21AQ8NDW8 1320 aa7.26□□□□□ -1.25
ATG4A-208ENST00000489247 AKAP12Q02952 1782 aa7.25□□□□□ -1.25
ATG4A-208ENST00000489247 NWD1Q149M9 1564 aa7.25□□□□□ -1.25
ATG4A-208ENST00000489247 KIF20BQ96Q89 1820 aa7.25□□□□□ -1.25
ATG4A-208ENST00000489247 ERVH48-1M5A8F1 160 aa7.25□□□□□ -1.25
ATG4A-208ENST00000489247 CAPN5O15484 640 aaPredicted RBP7.25□□□□□ -1.25
ATG4A-208ENST00000489247 GPAT2Q6NUI2 795 aa7.25□□□□□ -1.25
ATG4A-208ENST00000489247 ADAMTS19Q8TE59 1207 aa7.25□□□□□ -1.25
ATG4A-208ENST00000489247 CEP126Q9P2H0 1117 aa7.25□□□□□ -1.25
ATG4A-208ENST00000489247 POLKQ9UBT6 870 aa7.25□□□□□ -1.25
ATG4A-208ENST00000489247 NPHP4O75161 1426 aaPredicted RBP7.25□□□□□ -1.25
ATG4A-208ENST00000489247 SETD1BQ9UPS6 1966 aaKnown RBP7.24□□□□□ -1.25
ATG4A-208ENST00000489247 RNF225M0QZC1 329 aaPredicted RBP7.24□□□□□ -1.25
ATG4A-208ENST00000489247 BMP1P13497 986 aa7.24□□□□□ -1.25
ATG4A-208ENST00000489247 CBLBQ13191 982 aa7.24□□□□□ -1.25
ATG4A-208ENST00000489247 HDGFL1Q5TGJ6 251 aa7.24□□□□□ -1.25
ATG4A-208ENST00000489247 PNNQ9H307 717 aaKnown RBP7.24□□□□□ -1.25
ATG4A-208ENST00000489247 ADGRL3Q9HAR2 1447 aa7.24□□□□□ -1.25
ATG4A-208ENST00000489247 ACEP12821 1306 aa7.24□□□□□ -1.25
ATG4A-208ENST00000489247 IL16Q14005 1332 aa7.24□□□□□ -1.25
ATG4A-208ENST00000489247 KIF24Q5T7B8 1368 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 USP54Q70EL1 1684 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 DIAPH1O60610 1272 aaKnown RBP7.23□□□□□ -1.25
ATG4A-208ENST00000489247 IGHA1P01876 353 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 CT47B1P0C2W7 299 aaPredicted RBP7.23□□□□□ -1.25
ATG4A-208ENST00000489247 KCNA6P17658 529 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 TNNT2P45379 298 aaPredicted RBP7.23□□□□□ -1.25
ATG4A-208ENST00000489247 TSGA10IPQ3SY00 556 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 TRIM46Q7Z4K8 759 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 CCDC146Q8IYE0 955 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 TCP11L2Q8N4U5 519 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 ZNF784Q8NCA9 323 aaPredicted RBP7.23□□□□□ -1.25
ATG4A-208ENST00000489247 EMILIN1Q9Y6C2 1016 aa7.23□□□□□ -1.25
ATG4A-208ENST00000489247 NALCNQ8IZF0 1738 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 FMN2Q9NZ56 1722 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 NCOA3Q9Y6Q9 1424 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 IL13P35225 146 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 MCCD1P59942 119 aaPredicted RBP7.22□□□□□ -1.25
ATG4A-208ENST00000489247 SEMA3FQ13275 785 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 NME9Q86XW9 330 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 PHTF2Q8N3S3 785 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 COG3Q96JB2 828 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 CCDC85AQ96PX6 553 aaPredicted RBP7.22□□□□□ -1.25
ATG4A-208ENST00000489247 ALG2Q9H553 416 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 CYLDQ9NQC7 956 aa7.22□□□□□ -1.25
ATG4A-208ENST00000489247 CHD2O14647 1828 aaKnown RBP7.22□□□□□ -1.25
ATG4A-208ENST00000489247 ITSN1Q15811 1721 aa7.21□□□□□ -1.25
ATG4A-208ENST00000489247 MST1RQ04912 1400 aa7.21□□□□□ -1.25
ATG4A-208ENST00000489247 PIK3CDO00329 1044 aa7.21□□□□□ -1.26
ATG4A-208ENST00000489247 LILRA1O75019 489 aa7.21□□□□□ -1.26
ATG4A-208ENST00000489247 U2AF1L5P0DN76 240 aaPredicted RBP7.21□□□□□ -1.26
ATG4A-208ENST00000489247 ADD1P35611 737 aaKnown RBP7.21□□□□□ -1.26
ATG4A-208ENST00000489247 U2AF1Q01081 240 aaKnown RBP eCLIP7.21□□□□□ -1.26
ATG4A-208ENST00000489247 DHX9Q08211 1270 aaKnown RBP7.21□□□□□ -1.26
ATG4A-208ENST00000489247 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.21□□□□□ -1.26
ATG4A-208ENST00000489247 SEPT12Q8IYM1 358 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms