RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SASH1O94885 1247 aa14.88□□□□□ -0.03
HDAC6-230ENST00000488543 RBM25P49756 843 aaKnown RBP14.88□□□□□ -0.03
HDAC6-230ENST00000488543 OS9Q13438 667 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-230ENST00000488543 ERC1Q8IUD2 1116 aa14.88□□□□□ -0.03
HDAC6-230ENST00000488543 SIL1Q9H173 461 aa14.88□□□□□ -0.03
HDAC6-230ENST00000488543 CHMP3Q9Y3E7 222 aa14.88□□□□□ -0.03
HDAC6-230ENST00000488543 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-230ENST00000488543 PCCAP05165 728 aaPredicted RBP14.87□□□□□ -0.03
HDAC6-230ENST00000488543 SLC27A3Q5K4L6 730 aa14.87□□□□□ -0.03
HDAC6-230ENST00000488543 PI4K2BQ8TCG2 481 aa14.87□□□□□ -0.03
HDAC6-230ENST00000488543 TAF1LQ8IZX4 1826 aa14.87□□□□□ -0.03
HDAC6-230ENST00000488543 PLSCR1O15162 318 aa14.87□□□□□ -0.03
HDAC6-230ENST00000488543 COPRSQ9NQ92 184 aa14.87□□□□□ -0.03
HDAC6-230ENST00000488543 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.86□□□□□ -0.03
HDAC6-230ENST00000488543 TRAPPC3LQ5T215 181 aa14.86□□□□□ -0.03
HDAC6-230ENST00000488543 NARFQ9UHQ1 456 aa14.86□□□□□ -0.03
HDAC6-230ENST00000488543 C4BP0C0L5 1744 aa14.86□□□□□ -0.03
HDAC6-230ENST00000488543 PTPN12Q05209 780 aaKnown RBP14.86□□□□□ -0.03
HDAC6-230ENST00000488543 TBC1D9BQ66K14 1250 aa14.86□□□□□ -0.03
HDAC6-230ENST00000488543 ZPR1O75312 459 aa14.85□□□□□ -0.03
HDAC6-230ENST00000488543 RFC4P35249 363 aa14.85□□□□□ -0.03
HDAC6-230ENST00000488543 G3BP1Q13283 466 aaKnown RBP eCLIP14.85□□□□□ -0.03
HDAC6-230ENST00000488543 GZF1Q9H116 711 aaPredicted RBP14.85□□□□□ -0.03
HDAC6-230ENST00000488543 IRS4O14654 1257 aaPredicted RBP14.85□□□□□ -0.03
HDAC6-230ENST00000488543 HCLS1P14317 486 aaPredicted RBP14.85□□□□□ -0.03
HDAC6-230ENST00000488543 EN1Q05925 392 aaPredicted RBP14.84□□□□□ -0.03
HDAC6-230ENST00000488543 CLEC4GQ6UXB4 293 aa14.84□□□□□ -0.03
HDAC6-230ENST00000488543 CLASRPQ8N2M8 674 aaKnown RBP14.84□□□□□ -0.03
HDAC6-230ENST00000488543 ZNF594Q96JF6 807 aaPredicted RBP14.84□□□□□ -0.03
HDAC6-230ENST00000488543 ZNF827Q17R98 1081 aa14.84□□□□□ -0.03
HDAC6-230ENST00000488543 ZNF652Q9Y2D9 606 aa14.84□□□□□ -0.03
HDAC6-230ENST00000488543 TTC41PQ6P2S7 1318 aa14.83□□□□□ -0.04
HDAC6-230ENST00000488543 KIF2CQ99661 725 aa14.83□□□□□ -0.04
HDAC6-230ENST00000488543 UTP14AQ9BVJ6 771 aaKnown RBP14.83□□□□□ -0.04
HDAC6-230ENST00000488543 EZH2Q15910 746 aaKnown RBP14.83□□□□□ -0.04
HDAC6-230ENST00000488543 CCDC24Q8N4L8 307 aa14.83□□□□□ -0.04
HDAC6-230ENST00000488543 EAF2Q96CJ1 260 aaPredicted RBP14.83□□□□□ -0.04
HDAC6-230ENST00000488543 NTSR2O95665 410 aa14.82□□□□□ -0.04
HDAC6-230ENST00000488543 AACSQ86V21 672 aa14.82□□□□□ -0.04
HDAC6-230ENST00000488543 CASC1Q6TDU7 716 aa14.82□□□□□ -0.04
HDAC6-230ENST00000488543 TTLL11Q8NHH1 800 aa14.82□□□□□ -0.04
HDAC6-230ENST00000488543 TFCP2L1Q9NZI6 479 aa14.82□□□□□ -0.04
HDAC6-230ENST00000488543 BCORQ6W2J9 1755 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 SH3TC1Q8TE82 1336 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 MYH3P11055 1940 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 TRIM6-TRIM34B2RNG4 842 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 CHMLP26374 656 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 PARP10Q53GL7 1025 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 RILPL2Q969X0 211 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 USP26Q9BXU7 913 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 GREM2Q9H772 168 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 CDHR2Q9BYE9 1310 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 CSF1RP07333 972 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 IFIT2P09913 472 aaKnown RBP14.81□□□□□ -0.04
HDAC6-230ENST00000488543 DEFB132Q7Z7B7 95 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 PLA2G12BQ9BX93 195 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 ECHDC1Q9NTX5 307 aa14.81□□□□□ -0.04
HDAC6-230ENST00000488543 MAP4K4O95819 1239 aaPredicted RBP14.8□□□□□ -0.04
HDAC6-230ENST00000488543 ERFEQ4G0M1 354 aa14.8□□□□□ -0.04
HDAC6-230ENST00000488543 SETDB2Q96T68 719 aa14.8□□□□□ -0.04
HDAC6-230ENST00000488543 PUS3Q9BZE2 481 aaKnown RBP14.8□□□□□ -0.04
HDAC6-230ENST00000488543 FOXD4L1Q9NU39 408 aa14.8□□□□□ -0.04
HDAC6-230ENST00000488543 TLR7Q9NYK1 1049 aaKnown RBP14.8□□□□□ -0.04
HDAC6-230ENST00000488543 ERC2O15083 957 aa14.8□□□□□ -0.04
HDAC6-230ENST00000488543 GLRX3O76003 335 aaKnown RBP14.8□□□□□ -0.04
HDAC6-230ENST00000488543 LRRC24Q50LG9 513 aa14.8□□□□□ -0.04
HDAC6-230ENST00000488543 AKT1S1Q96B36 256 aa14.8□□□□□ -0.04
HDAC6-230ENST00000488543 ESYT1Q9BSJ8 1104 aa14.8□□□□□ -0.04
HDAC6-230ENST00000488543 CCDC8Q9H0W5 538 aaPredicted RBP14.8□□□□□ -0.04
HDAC6-230ENST00000488543 PDE8AO60658 829 aa14.79□□□□□ -0.04
HDAC6-230ENST00000488543 CTSWP56202 376 aa14.79□□□□□ -0.04
HDAC6-230ENST00000488543 TFCP2Q12800 502 aa14.79□□□□□ -0.04
HDAC6-230ENST00000488543 C3orf67Q6ZVT6 689 aa14.79□□□□□ -0.04
HDAC6-230ENST00000488543 ATG9AQ7Z3C6 839 aa14.79□□□□□ -0.04
HDAC6-230ENST00000488543 CAMKK2Q96RR4 588 aa14.79□□□□□ -0.04
HDAC6-230ENST00000488543 GOLGB1Q14789 3259 aaKnown RBP14.78□□□□□ -0.04
HDAC6-230ENST00000488543 GYS1P13807 737 aa14.78□□□□□ -0.04
HDAC6-230ENST00000488543 SSFA2P28290 1259 aa14.78□□□□□ -0.04
HDAC6-230ENST00000488543 NFIXQ14938 502 aa14.78□□□□□ -0.04
HDAC6-230ENST00000488543 CCDC57Q2TAC2 916 aa14.78□□□□□ -0.04
HDAC6-230ENST00000488543 ADRA2BP18089 450 aa14.78□□□□□ -0.04
HDAC6-230ENST00000488543 ITGA6P23229 1130 aa14.78□□□□□ -0.04
HDAC6-230ENST00000488543 GPATCH3Q96I76 525 aa14.78□□□□□ -0.04
HDAC6-230ENST00000488543 UBR3Q6ZT12 1888 aa14.78□□□□□ -0.04
HDAC6-230ENST00000488543 GTF2E1P29083 439 aaPredicted RBP14.77□□□□□ -0.04
HDAC6-230ENST00000488543 TNNI3KQ59H18 835 aa14.77□□□□□ -0.04
HDAC6-230ENST00000488543 COL23A1Q86Y22 540 aaPredicted RBP14.77□□□□□ -0.04
HDAC6-230ENST00000488543 FPGT-TNNI3KV9GXZ4 949 aa14.77□□□□□ -0.04
HDAC6-230ENST00000488543 TNS1Q9HBL0 1735 aaKnown RBP14.77□□□□□ -0.04
HDAC6-230ENST00000488543 IFIT5Q13325 482 aaKnown RBP14.77□□□□□ -0.05
HDAC6-230ENST00000488543 NBPF5PQ86XG9 351 aaPredicted RBP14.77□□□□□ -0.05
HDAC6-230ENST00000488543 SEC31BQ9NQW1 1179 aa14.77□□□□□ -0.05
HDAC6-230ENST00000488543 REC8O95072 547 aa14.76□□□□□ -0.05
HDAC6-230ENST00000488543 CNTROBQ8N137 903 aa14.76□□□□□ -0.05
HDAC6-230ENST00000488543 IL25Q9H293 177 aa14.76□□□□□ -0.05
HDAC6-230ENST00000488543 C4AP0C0L4 1744 aa14.76□□□□□ -0.05
HDAC6-230ENST00000488543 CD2BP2O95400 341 aaKnown RBP14.76□□□□□ -0.05
HDAC6-230ENST00000488543 DBNLQ9UJU6 430 aaKnown RBP14.76□□□□□ -0.05
HDAC6-230ENST00000488543 DDX60Q8IY21 1712 aaKnown RBP14.75□□□□□ -0.05
HDAC6-230ENST00000488543 MCM4P33991 863 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms