RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ANP32C	O43423	234 aa		11.64	□□□□□ -0.55
USP4-213	ENST00000488520	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.64	□□□□□ -0.55
USP4-213	ENST00000488520	POTEC	B2RU33	542 aa		11.63	□□□□□ -0.55
USP4-213	ENST00000488520	C21orf2	O43822	256 aa		11.63	□□□□□ -0.55
USP4-213	ENST00000488520	COL9A1	P20849	921 aa		11.63	□□□□□ -0.55
USP4-213	ENST00000488520	MTHFSD	Q2M296	383 aa	Known RBP	11.63	□□□□□ -0.55
USP4-213	ENST00000488520	VSIG10	Q8N0Z9	540 aa		11.63	□□□□□ -0.55
USP4-213	ENST00000488520	RALBP1	Q15311	655 aa		11.62	□□□□□ -0.55
USP4-213	ENST00000488520	TBC1D9B	Q66K14	1250 aa		11.62	□□□□□ -0.55
USP4-213	ENST00000488520	TBC1D2B	Q9UPU7	963 aa		11.62	□□□□□ -0.55
USP4-213	ENST00000488520	NUP98	P52948	1817 aa		11.61	□□□□□ -0.55
USP4-213	ENST00000488520	EIF5	P55010	431 aa	Known RBP	11.61	□□□□□ -0.55
USP4-213	ENST00000488520	ERFE	Q4G0M1	354 aa		11.61	□□□□□ -0.55
USP4-213	ENST00000488520	TTC5	Q8N0Z6	440 aa		11.61	□□□□□ -0.55
USP4-213	ENST00000488520	STARD3NL	O95772	234 aa		11.6	□□□□□ -0.55
USP4-213	ENST00000488520	OSBP	P22059	807 aa		11.6	□□□□□ -0.55
USP4-213	ENST00000488520	MKRN1	Q9UHC7	482 aa	Known RBP	11.6	□□□□□ -0.55
USP4-213	ENST00000488520	DLG5	Q8TDM6	1919 aa		11.6	□□□□□ -0.55
USP4-213	ENST00000488520	NPC1L1	Q9UHC9	1359 aa		11.59	□□□□□ -0.55
USP4-213	ENST00000488520	NPHP1	O15259	732 aa		11.59	□□□□□ -0.55
USP4-213	ENST00000488520	DIAPH1	O60610	1272 aa	Known RBP	11.59	□□□□□ -0.55
USP4-213	ENST00000488520	DDN	O94850	711 aa	Predicted RBP	11.59	□□□□□ -0.55
USP4-213	ENST00000488520	PDE6B	P35913	854 aa		11.59	□□□□□ -0.55
USP4-213	ENST00000488520	TSR1	Q2NL82	804 aa	Known RBP	11.59	□□□□□ -0.55
USP4-213	ENST00000488520	DIEXF	Q68CQ4	756 aa	Known RBP	11.59	□□□□□ -0.55
USP4-213	ENST00000488520	PRR5L	Q6MZQ0	368 aa		11.59	□□□□□ -0.55
USP4-213	ENST00000488520	ZNF496	Q96IT1	587 aa	Predicted RBP	11.59	□□□□□ -0.55
USP4-213	ENST00000488520	CFAP53	Q96M91	514 aa		11.59	□□□□□ -0.55
USP4-213	ENST00000488520	TRPM7	Q96QT4	1865 aa		11.59	□□□□□ -0.55
USP4-213	ENST00000488520		A0A087WZG4	1122 aa		11.58	□□□□□ -0.56
USP4-213	ENST00000488520	A1BG	P04217	495 aa		11.58	□□□□□ -0.56
USP4-213	ENST00000488520	TEF	Q10587	303 aa		11.58	□□□□□ -0.56
USP4-213	ENST00000488520	PROX2	Q3B8N5	592 aa		11.58	□□□□□ -0.56
USP4-213	ENST00000488520	BRIP1	Q9BX63	1249 aa		11.58	□□□□□ -0.56
USP4-213	ENST00000488520	HEG1	Q9ULI3	1381 aa		11.57	□□□□□ -0.56
USP4-213	ENST00000488520	MLLT3	P42568	568 aa	Predicted RBP	11.57	□□□□□ -0.56
USP4-213	ENST00000488520	SETDB2	Q96T68	719 aa		11.57	□□□□□ -0.56
USP4-213	ENST00000488520	TAOK3	Q9H2K8	898 aa		11.57	□□□□□ -0.56
USP4-213	ENST00000488520	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.56	□□□□□ -0.56
USP4-213	ENST00000488520	U2SURP	O15042	1029 aa	Known RBP	11.56	□□□□□ -0.56
USP4-213	ENST00000488520	PIP4K2A	P48426	406 aa	Predicted RBP	11.56	□□□□□ -0.56
USP4-213	ENST00000488520	ZNF790	Q6PG37	636 aa		11.56	□□□□□ -0.56
USP4-213	ENST00000488520	NPM2	Q86SE8	214 aa	Known RBP	11.56	□□□□□ -0.56
USP4-213	ENST00000488520	CNBD1	Q8NA66	436 aa		11.56	□□□□□ -0.56
USP4-213	ENST00000488520	IL17RE	Q8NFR9	667 aa		11.56	□□□□□ -0.56
USP4-213	ENST00000488520	NBPF3	Q9H094	633 aa		11.56	□□□□□ -0.56
USP4-213	ENST00000488520	PDZRN3	Q9UPQ7	1066 aa		11.56	□□□□□ -0.56
USP4-213	ENST00000488520	GNAT3	A8MTJ3	354 aa		11.55	□□□□□ -0.56
USP4-213	ENST00000488520	KCNQ3	O43525	872 aa		11.55	□□□□□ -0.56
USP4-213	ENST00000488520	PPP2R1A	P30153	589 aa		11.55	□□□□□ -0.56
USP4-213	ENST00000488520	IL6ST	P40189	918 aa	Predicted RBP	11.55	□□□□□ -0.56
USP4-213	ENST00000488520	ST5	P78524	1137 aa		11.55	□□□□□ -0.56
USP4-213	ENST00000488520	PRPF40B	Q6NWY9	871 aa	Known RBP	11.55	□□□□□ -0.56
USP4-213	ENST00000488520	CNKSR1	Q969H4	720 aa		11.55	□□□□□ -0.56
USP4-213	ENST00000488520	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.55	□□□□□ -0.56
USP4-213	ENST00000488520	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.55	□□□□□ -0.56
USP4-213	ENST00000488520	RABGEF1	Q9UJ41	708 aa		11.55	□□□□□ -0.56
USP4-213	ENST00000488520	NUDC	Q9Y266	331 aa		11.55	□□□□□ -0.56
USP4-213	ENST00000488520	FOXN1	O15353	648 aa		11.54	□□□□□ -0.56
USP4-213	ENST00000488520	CAMTA2	O94983	1202 aa		11.54	□□□□□ -0.56
USP4-213	ENST00000488520	SRGN	P10124	158 aa		11.54	□□□□□ -0.56
USP4-213	ENST00000488520	DZIP3	Q86Y13	1208 aa	Known RBP	11.54	□□□□□ -0.56
USP4-213	ENST00000488520	MASTL	Q96GX5	879 aa		11.54	□□□□□ -0.56
USP4-213	ENST00000488520	FMNL2	Q96PY5	1086 aa		11.54	□□□□□ -0.56
USP4-213	ENST00000488520	LTBP3	Q9NS15	1303 aa		11.54	□□□□□ -0.56
USP4-213	ENST00000488520	LAMB4	A4D0S4	1761 aa		11.54	□□□□□ -0.56
USP4-213	ENST00000488520	ADAMTSL1	Q8N6G6	1762 aa		11.54	□□□□□ -0.56
USP4-213	ENST00000488520	COL3A1	P02461	1466 aa	Predicted RBP	11.53	□□□□□ -0.56
USP4-213	ENST00000488520	EAPP	Q56P03	285 aa	Predicted RBP	11.53	□□□□□ -0.56
USP4-213	ENST00000488520	STYK1	Q6J9G0	422 aa		11.53	□□□□□ -0.56
USP4-213	ENST00000488520	MRPL50	Q8N5N7	158 aa	Known RBP	11.53	□□□□□ -0.56
USP4-213	ENST00000488520	POLR2A	P24928	1970 aa	Known RBP	11.53	□□□□□ -0.56
USP4-213	ENST00000488520	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.53	□□□□□ -0.56
USP4-213	ENST00000488520	CASP8AP2	Q9UKL3	1982 aa		11.52	□□□□□ -0.56
USP4-213	ENST00000488520	PRAMEF22	A3QJZ6	481 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	FAM177B	A6PVY3	158 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	BTBD11	A6QL63	1104 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	TRIM6-TRIM34	B2RNG4	842 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	SEMA3E	O15041	775 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	OLFM4	Q6UX06	510 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	GAS2L2	Q8NHY3	880 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	USP16	Q9Y5T5	823 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	CNTNAP1	P78357	1384 aa		11.52	□□□□□ -0.57
USP4-213	ENST00000488520	TAF1	P21675	1872 aa		11.51	□□□□□ -0.57
USP4-213	ENST00000488520	IQCA1L	A6NCM1	817 aa		11.51	□□□□□ -0.57
USP4-213	ENST00000488520	SOGA3	Q5TF21	947 aa		11.51	□□□□□ -0.57
USP4-213	ENST00000488520	LDHD	Q86WU2	507 aa		11.51	□□□□□ -0.57
USP4-213	ENST00000488520	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.51	□□□□□ -0.57
USP4-213	ENST00000488520	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.51	□□□□□ -0.57
USP4-213	ENST00000488520	CDHR5	Q9HBB8	845 aa		11.51	□□□□□ -0.57
USP4-213	ENST00000488520	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.51	□□□□□ -0.57
USP4-213	ENST00000488520	PASK	Q96RG2	1323 aa		11.51	□□□□□ -0.57
USP4-213	ENST00000488520	ZNF541	Q9H0D2	1346 aa		11.51	□□□□□ -0.57
USP4-213	ENST00000488520	NEFM	P07197	916 aa		11.5	□□□□□ -0.57
USP4-213	ENST00000488520	VEGFB	P49765	207 aa		11.5	□□□□□ -0.57
USP4-213	ENST00000488520	CCDC93	Q567U6	631 aa		11.5	□□□□□ -0.57
USP4-213	ENST00000488520	AIDA	Q96BJ3	306 aa		11.5	□□□□□ -0.57
USP4-213	ENST00000488520	PHACTR3	Q96KR7	559 aa		11.5	□□□□□ -0.57
USP4-213	ENST00000488520	KIAA1468	Q9P260	1216 aa		11.5	□□□□□ -0.57
USP4-213	ENST00000488520	LTBP1	Q14766	1721 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms