RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 SERPINB2P05120 415 aa13.02□□□□□ -0.33
SKA1-204ENST00000488454 MICALL2Q8IY33 904 aa13.02□□□□□ -0.33
SKA1-204ENST00000488454 CCDC191Q8NCU4 936 aa13.02□□□□□ -0.33
SKA1-204ENST00000488454 LINS1Q8NG48 757 aa13.02□□□□□ -0.33
SKA1-204ENST00000488454 ISCA1Q9BUE6 129 aa13.02□□□□□ -0.33
SKA1-204ENST00000488454 UTP14AQ9BVJ6 771 aaKnown RBP13.02□□□□□ -0.33
SKA1-204ENST00000488454 CWC25Q9NXE8 425 aaPredicted RBP13.02□□□□□ -0.33
SKA1-204ENST00000488454 ADCY9O60503 1353 aa13.02□□□□□ -0.33
SKA1-204ENST00000488454 CARMIL3Q8ND23 1372 aa13.02□□□□□ -0.33
SKA1-204ENST00000488454 POLRMTO00411 1230 aaKnown RBP13.01□□□□□ -0.33
SKA1-204ENST00000488454 ALDH1L1O75891 902 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 CCT4P50991 539 aaKnown RBP13.01□□□□□ -0.33
SKA1-204ENST00000488454 BEND3Q5T5X7 828 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 SUSD4Q5VX71 490 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 NLRP10Q86W26 655 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 SLAIN1Q8ND83 568 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 CLUAP1Q96AJ1 413 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 SRCIN1Q9C0H9 1055 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 PPP1R1BQ9UD71 204 aaPredicted RBP13.01□□□□□ -0.33
SKA1-204ENST00000488454 TRMT112Q9UI30 125 aaKnown RBP13.01□□□□□ -0.33
SKA1-204ENST00000488454 ATP10DQ9P241 1426 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 QSER1Q2KHR3 1735 aa13.01□□□□□ -0.33
SKA1-204ENST00000488454 NEURL1BA8MQ27 555 aa13□□□□□ -0.33
SKA1-204ENST00000488454 TRIM27P14373 513 aa13□□□□□ -0.33
SKA1-204ENST00000488454 HSP90B1P14625 803 aaKnown RBP13□□□□□ -0.33
SKA1-204ENST00000488454 ST5P78524 1137 aa13□□□□□ -0.33
SKA1-204ENST00000488454 DDR1Q08345 913 aa13□□□□□ -0.33
SKA1-204ENST00000488454 CWF19L2Q2TBE0 894 aaKnown RBP13□□□□□ -0.33
SKA1-204ENST00000488454 DZIP1LQ8IYY4 767 aaKnown RBP13□□□□□ -0.33
SKA1-204ENST00000488454 CNBD1Q8NA66 436 aa13□□□□□ -0.33
SKA1-204ENST00000488454 UBN2Q6ZU65 1347 aa12.99□□□□□ -0.33
SKA1-204ENST00000488454 PLIN1O60240 522 aa12.99□□□□□ -0.33
SKA1-204ENST00000488454 IGKV5-2P06315 115 aa12.99□□□□□ -0.33
SKA1-204ENST00000488454 C9orf78Q9NZ63 289 aaPredicted RBP12.99□□□□□ -0.33
SKA1-204ENST00000488454 CACNA1FO60840 1977 aa12.99□□□□□ -0.33
SKA1-204ENST00000488454 TUBGCP6Q96RT7 1819 aa12.99□□□□□ -0.33
SKA1-204ENST00000488454 PPP1R37O75864 691 aa12.98□□□□□ -0.33
SKA1-204ENST00000488454 PTGER2P43116 358 aa12.98□□□□□ -0.33
SKA1-204ENST00000488454 GCKRQ14397 625 aa12.98□□□□□ -0.33
SKA1-204ENST00000488454 ZBTB38Q8NAP3 1195 aaPredicted RBP12.98□□□□□ -0.33
SKA1-204ENST00000488454 C4AP0C0L4 1744 aa12.97□□□□□ -0.33
SKA1-204ENST00000488454 RNF123Q5XPI4 1314 aa12.97□□□□□ -0.33
SKA1-204ENST00000488454 SH3TC1Q8TE82 1336 aa12.97□□□□□ -0.33
SKA1-204ENST00000488454 PCCAP05165 728 aaPredicted RBP12.97□□□□□ -0.33
SKA1-204ENST00000488454 RRP1P56182 461 aaKnown RBP12.97□□□□□ -0.33
SKA1-204ENST00000488454 PDE3AQ14432 1141 aa12.97□□□□□ -0.33
SKA1-204ENST00000488454 RTL5Q5HYW3 569 aaPredicted RBP12.97□□□□□ -0.33
SKA1-204ENST00000488454 INTS3Q68E01 1043 aaKnown RBP12.97□□□□□ -0.33
SKA1-204ENST00000488454 NUTM1Q86Y26 1132 aa12.97□□□□□ -0.33
SKA1-204ENST00000488454 FAM89AQ96GI7 184 aa12.97□□□□□ -0.33
SKA1-204ENST00000488454 HDAC5Q9UQL6 1122 aa12.97□□□□□ -0.33
SKA1-204ENST00000488454 SUPT16HQ9Y5B9 1047 aaKnown RBP12.97□□□□□ -0.33
SKA1-204ENST00000488454 ABCC4O15439 1325 aa12.96□□□□□ -0.33
SKA1-204ENST00000488454 GRM8O00222 908 aa12.96□□□□□ -0.33
SKA1-204ENST00000488454 NTSR2O95665 410 aa12.96□□□□□ -0.33
SKA1-204ENST00000488454 ERFEQ4G0M1 354 aa12.96□□□□□ -0.33
SKA1-204ENST00000488454 PRR5LQ6MZQ0 368 aa12.96□□□□□ -0.33
SKA1-204ENST00000488454 ITPRIPQ8IWB1 547 aa12.96□□□□□ -0.33
SKA1-204ENST00000488454 TMEM57Q8N5G2 664 aa12.96□□□□□ -0.33
SKA1-204ENST00000488454 TNNQ9UQP3 1299 aa12.96□□□□□ -0.33
SKA1-204ENST00000488454 CASZ1Q86V15 1759 aa12.96□□□□□ -0.34
SKA1-204ENST00000488454 H7C1W4 665 aa12.95□□□□□ -0.34
SKA1-204ENST00000488454 IRS4O14654 1257 aaPredicted RBP12.95□□□□□ -0.34
SKA1-204ENST00000488454 PDE6BP35913 854 aa12.95□□□□□ -0.34
SKA1-204ENST00000488454 UBE3BQ7Z3V4 1068 aa12.95□□□□□ -0.34
SKA1-204ENST00000488454 CCDC24Q8N4L8 307 aa12.95□□□□□ -0.34
SKA1-204ENST00000488454 PANK1Q8TE04 598 aa12.95□□□□□ -0.34
SKA1-204ENST00000488454 JARID2Q92833 1246 aaPredicted RBP12.95□□□□□ -0.34
SKA1-204ENST00000488454 NLRP3Q96P20 1036 aa12.95□□□□□ -0.34
SKA1-204ENST00000488454 BRIP1Q9BX63 1249 aa12.95□□□□□ -0.34
SKA1-204ENST00000488454 CHMP4BQ9H444 224 aaKnown RBP12.95□□□□□ -0.34
SKA1-204ENST00000488454 SCN7AQ01118 1682 aa12.95□□□□□ -0.34
SKA1-204ENST00000488454 IBTKQ9P2D0 1353 aaPredicted RBP12.94□□□□□ -0.34
SKA1-204ENST00000488454 GNAI3P08754 354 aa12.94□□□□□ -0.34
SKA1-204ENST00000488454 SLC10A5Q5PT55 438 aa12.94□□□□□ -0.34
SKA1-204ENST00000488454 PDZRN3Q9UPQ7 1066 aa12.94□□□□□ -0.34
SKA1-204ENST00000488454 CD2APQ9Y5K6 639 aa12.94□□□□□ -0.34
SKA1-204ENST00000488454 BCORQ6W2J9 1755 aa12.94□□□□□ -0.34
SKA1-204ENST00000488454 PXDNLA1KZ92 1463 aa12.93□□□□□ -0.34
SKA1-204ENST00000488454 UBTFL1P0CB47 393 aaPredicted RBP12.93□□□□□ -0.34
SKA1-204ENST00000488454 RLBP1P12271 317 aa12.93□□□□□ -0.34
SKA1-204ENST00000488454 HCLS1P14317 486 aaPredicted RBP12.93□□□□□ -0.34
SKA1-204ENST00000488454 SYNE4Q8N205 404 aa12.93□□□□□ -0.34
SKA1-204ENST00000488454 USP44Q9H0E7 712 aa12.93□□□□□ -0.34
SKA1-204ENST00000488454 RYDENQ9NUL5 291 aaKnown RBP12.93□□□□□ -0.34
SKA1-204ENST00000488454 NUP98P52948 1817 aa12.92□□□□□ -0.34
SKA1-204ENST00000488454 H0YIN7 160 aa12.92□□□□□ -0.34
SKA1-204ENST00000488454 GTPBP6O43824 516 aaPredicted RBP12.92□□□□□ -0.34
SKA1-204ENST00000488454 PDE8AO60658 829 aa12.92□□□□□ -0.34
SKA1-204ENST00000488454 TGFB2P61812 414 aa12.92□□□□□ -0.34
SKA1-204ENST00000488454 MVPQ14764 893 aaKnown RBP12.92□□□□□ -0.34
SKA1-204ENST00000488454 BBXQ8WY36 941 aaPredicted RBP12.92□□□□□ -0.34
SKA1-204ENST00000488454 DDX19BQ9UMR2 479 aa12.92□□□□□ -0.34
SKA1-204ENST00000488454 COG6Q9Y2V7 657 aa12.92□□□□□ -0.34
SKA1-204ENST00000488454 ARFGEF2Q9Y6D5 1785 aa12.92□□□□□ -0.34
SKA1-204ENST00000488454 CDHR2Q9BYE9 1310 aa12.91□□□□□ -0.34
SKA1-204ENST00000488454 NBPF7P0C2Y1 421 aaPredicted RBP12.91□□□□□ -0.34
SKA1-204ENST00000488454 C20orf194Q5TEA3 1177 aa12.91□□□□□ -0.34
SKA1-204ENST00000488454 C2CD5Q86YS7 1000 aa12.91□□□□□ -0.34
SKA1-204ENST00000488454 UTYO14607 1347 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms